Xiphophorus hellerii (green swordtail): 116723440
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Entry
116723440 CDS
T07363
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04382
Cornified envelope formation
xhe04510
Focal adhesion
xhe04512
ECM-receptor interaction
xhe04518
Integrin signaling
xhe04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116723440 (col4a1)
04518 Integrin signaling
116723440 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116723440 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116723440 (col4a1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
116723440 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xhe04147
]
116723440 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
xhe00536
]
116723440 (col4a1)
Exosome [BR:
xhe04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116723440 (col4a1)
Glycosaminoglycan binding proteins [BR:
xhe00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116723440 (col4a1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116723440
NCBI-ProteinID:
XP_032424217
LinkDB
All DBs
Position
7:13845975..13889314
Genome browser
AA seq
1644 aa
AA seq
DB search
MLSPSGALPPLLLLLLAALYCSLDLTRAEGCGASCGKCDCSGVKGAKGERGFPGLQGNMG
FPGMQGHEGPPGPMGPKGDLGAPGAPGLKGVRGPPGLPGFPGNPGLPGLNGNDGPPGAPG
IPGCNGTKGERGMDGINGFPGLQGPPGLPGLEGMKGDPGGVIGINPLKGDRGVPGSPGRP
GPPGIFGPIGPPGPRGYPGFKGDSGPPGPPGEKGDRLAFVSEKGDKGERGLRGPPGPPGP
PEEVIGQTTVLVPGPRGEKGLKGDRGEKGFCLPHQKGIKGEQGPPGPRGKPGKDGEFGIK
GEKGSSGVPGFPGLSGDKGEKGPPGYAEGPPGPPGPPGLPGKSGEKGFPGPQGEAGPPGR
FIEGSRGEPGKKGETGEKGDRGRDGESLAGPPGRPGPVGPPGPPGLAPDPEECNMEKGNP
GPPGSPGLSGEEGQKGDKGEACVSCDGQPGPPGPAGVKGEQGPPGAVGGKGEKGRSGLPG
EPGTPGSSGSPGLMGAPGAVGEPGDIFIAPGYKGEKGISGRPGLQGQPGREGQPGRDGLP
GQPGLKGEPAKEGIKGERGPDGDPGLMGPPGERGPPGVPGFGRPGGPGEKGSQGQSGRPG
SPGQPGLKGEPGKGISTPGPPGQPGPRGASGFPGLQGDRGETGVQGLPGFPGVKGEQGPP
GIGFPGPAGVKGISGIPGAPGVPGEPGRPGQDGSTGKAGPPGQKGEPGRGLPGPKGAQGH
QGITGFPGDKGGMGLPGIPGSEGHTGPPGPQGVKGDVGPPGPPGQIGQSGAPGKGLPGPQ
GPQGPRGETGPHGREGIKGEKGYPGSPGLDMPGPQGDKGAAGFPGDPGTKGLPGLPGVPG
RDGLIGYQGPKGEMGVMGIPGTPGFPGPPGQPGSPGLRGDPGVTGPRGESGKEGEKGERG
EEGPPGPPGNLTQTDMEHMKGEKGDIGDPGDRGSAGERGHPGIRGEQGMAGKDGEPGSPG
QPGQKGDPGFPGDPGNMGPPGPKGGVGEMGIPGPVGPKGTKGDIGTAGHPGFRGTDGEKG
DPGLPGEPGIGVPGFPGDKGRAGEPGLPGYRGDKGEKGHEGMPGKPGLQGPKGDQGGAGY
PGQSGRPGEKGNPGLPGSAGEAGREGRPGEGGRQGPPGPRGDKGEPGQDGIPGSSGERGD
PGLPGLGVPGRPGALGERGDKGDPGLPGMPGQSGVPGIKGEKGLAGPQGQQGEPGERGLP
GISLEGPKGVQGATGPAGGTGTPGAPGPAGVPGREGQQGEKGDAGRPGYQGESGQKGDSG
SPGFPGPPGLPGINGQKGERGLPGVAGFPGTKGTLGDSGFKGGAGDRGFPGEKGNEGPPG
PPGPKIFIKGDTGLPGDQGFPGPQGPPGFPGQKGEQGVTGIQGPKGETGIHGFDGQSGAK
GEPGVPGPQGPRGYPGPPGPDGVQGQVGPPGPSSMDHGFLVTRHSQSVEVPLCPGGTTQI
YDGYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPE
PMPMSMAPITGDSIRPFISRCVVCEAPAMVIAVHSQTIRIPPCPQGWNSLWIGYSFVMHT
SAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIETEDMFTKPVP
TTLKAGSLRTHISRCQVCMKRTFT
NT seq
4935 nt
NT seq
+upstream
nt +downstream
nt
atgctgtcaccgtccggcgcgctgccgccgctgctgctgctgctgctggcggctctctac
tgcagcttagacctgacgcgggctgagggttgtggagcttcatgtggaaaatgtgactgc
agtggagtgaagggagccaagggtgagcgtggatttcctggccttcagggtaatatggga
ttcccaggaatgcaggggcatgagggccctcctgggccaatgggccccaagggagattta
ggagcacctggagctccgggactaaaaggagtgcgaggtcctcctggtctgccagggttt
ccagggaacccagggctaccaggcctcaatggaaacgacggtccgccaggtgcgcctgga
atcccaggatgcaatgggaccaaaggcgaaagaggaatggatggcattaatggttttcca
ggacttcaagggccgcctggcctcccaggtctggaaggaatgaaaggagatcctggtggt
gtgattgggattaacccccttaaaggagacagaggggttcctggctcacctggacgacct
gggccacctggaatctttggaccaattggacctccgggacccagaggatacccaggattt
aaaggggattctggacctcccggccctccaggagagaaaggtgacaggttggcctttgtg
agtgaaaaaggagataagggtgaacgaggactcagaggcccacctgggccccctggacca
cctgaagaagtgataggacagaccacagttcttgtaccgggaccacggggggagaaagga
ctgaagggtgacagaggcgagaaaggcttctgtctccctcatcagaaaggaatcaaaggt
gaacaaggcccacctggaccaagaggtaaacctggtaaagatggagagtttgggataaag
ggagaaaaaggttcctcaggagttcctggattccctggtttgtcgggcgataaaggagaa
aaaggaccaccgggttatgctgaaggtccacctggccctcctggcccacctggtctccca
gggaaatcgggagaaaaaggttttcctggccctcagggagaggctggcccaccaggccgc
ttcatcgagggttctcgtggagaacctgggaagaaaggagaaacgggtgagaaaggtgac
agaggcagagatggagaatctcttgctgggccaccgggaagaccagggcccgtcggaccc
ccggggccaccaggattagcacctgaccctgaagagtgtaatatggagaaaggaaacccc
ggtccacctggatctcctggattatcaggggaggagggacaaaaaggtgataaaggagaa
gcttgtgttagttgtgatggtcaacctggaccacctggccctgcaggcgttaaaggagag
caaggacctccaggcgcagttggaggtaaaggagaaaagggtcgctctggtctacctgga
gaacctggaacacctggttcttcaggatctcctggactgatgggggctcctggtgctgta
ggggaacctggagacattttcatagcacctggttataaaggggagaaaggtatttctgga
cgtcctggattacagggacaacctggcagggaaggacagccagggagagacggactcccg
ggtcaaccgggcctcaaaggagaacctgccaaagaaggcattaaaggtgaacgtggccca
gacggtgaccccggcctcatggggcctcctggagaaaggggaccccctggtgttccaggg
tttggccggccaggtggtccaggagagaaaggaagtcagggacagtcaggccgtccagga
agtccaggacagcccggtctgaaaggagagccaggtaaaggtattagcactccgggaccc
ccggggcagcctggaccaaggggagctagtggcttccctggacttcaaggtgacagaggt
gaaacaggtgtccaaggtctgccaggctttcctggagtaaagggagaacaaggaccacct
ggaatcggctttcctggcccagcgggtgtcaaaggtatcagtggaatccctggagcccca
ggagtccctggagagccagggagaccaggacaggacggctcaactggaaaagctggtcca
cctggacaaaagggtgagcctggacggggtcttccaggaccgaaaggtgcgcagggccac
caaggaatcacaggttttcctggagataagggtggcatgggactcccaggtattcccggc
tcagaaggacacacaggtcctccgggacctcagggagttaaaggtgacgtcggacctccg
ggaccacccggtcagatcggccaatcgggtgctccggggaaaggtttgcctggaccacaa
ggacctcaaggaccacgtggagaaacaggacctcatgggagagaaggtataaaaggagaa
aagggctaccctggctctccaggcctcgatatgccgggacctcagggagacaaaggagcc
gctggcttcccaggagaccctggtaccaaaggactgccgggtctgccaggcgtacccggc
cgagacgggttaatagggtaccaaggtcccaaaggtgaaatgggggttatgggaattcca
ggaacgccgggattcccaggaccacccgggcaacctgggtcgcctggtctgagaggggat
cctggtgttactggaccgagaggagagtctgggaaagaaggagagaaaggtgaaagggga
gaggagggtccgccaggtcctccaggaaacctcactcaaactgacatggagcatatgaaa
ggggaaaagggagacattggagacccaggtgaccgtggttctgccggagagaggggccac
cctggcattcgaggagaacagggaatggctggcaaagacggtgaacctggatcacctggc
cagccaggtcagaaaggagatcccggttttcctggagatcctggtaacatgggacctcca
gggccaaaaggcggcgtaggggagatgggaataccaggtccagttggtccaaaaggtacc
aaaggagacatcggtacagcgggtcatcctgggttcagaggcacagatggtgaaaaagga
gacccaggactacctggcgagccgggtattggtgtccctggatttccaggagacaagggc
agggcaggtgagccaggacttccaggataccgtggagacaagggtgagaagggtcatgag
ggaatgcctggcaaacccggcctgcagggaccaaagggtgaccaaggaggcgctgggtac
ccaggtcagtcaggcaggccaggcgagaagggcaatcctggacttcctggatctgccgga
gaggccggtcgtgaaggtcgccctggcgaaggtggccggcagggacctccgggtccccgc
ggagataagggtgagcctggacaggacggcatccctggatcctctggggagagaggagac
ccaggtttgccaggtcttggtgtgcctggacgtcctggagctctcggtgaaagaggtgat
aaaggtgatccgggtcttcccggcatgcctggtcaatcaggtgtccctggtattaaagga
gaaaagggtcttgctggacctcagggacaacagggggagccaggagagcgaggtcttccc
ggcatctcgctggaaggccccaaaggagttcagggagcaacaggacctgccggaggaaca
ggaacaccaggggcaccaggacctgctggagtgccaggcagagagggccaacagggcgag
aaaggtgatgcaggtcggcctggttatcagggagagtcggggcaaaagggcgactctgga
tctcctggatttcctgggccacccggcctcccaggcatcaacggccagaagggcgagcga
ggattaccgggagttgcaggcttcccaggcacaaaaggtactctgggtgactctggattt
aaaggcggagcgggtgacagaggcttccctggagaaaaaggtaatgaaggaccccctggt
ccacccggccccaagatcttcatcaaaggagacactggactccctggagatcagggtttc
cctggacctcagggaccaccgggctttcctgggcagaaaggagagcaaggtgtgacgggt
attcagggtccaaaaggtgaaaccggcatccatggatttgatggtcagtcaggcgccaaa
ggagaacctggtgtgccggggccacaaggacccagaggatatccaggtccaccgggacct
gacggtgttcaaggtcaagtgggtccgcctggcccgtcgtccatggaccatggtttctta
gtaacacgccacagccaaagtgtggaggtgccactgtgccctggaggtaccactcaaata
tatgatggctactcgttgctctatgtgcaaggcaatgagcgctcccatggacaagactta
ggtacggcaggcagttgcctccgaaagttcagccccatgccgttcttgttctgcaacatc
aacaacgtttgcaactttgcgtctcgtaacgattactcctactggctcacctcaccggag
ccaatgcccatgagcatggcgcccatcaccggggacagcatcaggcccttcatcagcagg
tgtgttgtatgtgaagctccggccatggtgatcgcagtccacagccagacaatcaggatc
ccgccttgccctcaaggctggaactctctgtggatcggctactcctttgtcatgcacacc
agcgcaggtgctgagggttcaggtcaggcgttggcctctcctggttcctgtctggaggag
tttcgcagcgccccattcatcgaatgtcacggtcgaggaacctgcaactactacgccaac
tcctacagcttctggctcgccaccatcgagacagaggacatgtttacgaaacccgtcccg
acgacgctcaaagcaggcagcctccgaacacacataagccgctgtcaagtgtgcatgaag
aggacattcacttaa
DBGET
integrated database retrieval system
