Xiphophorus hellerii (green swordtail): 116723662
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Entry
116723662 CDS
T07363
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116723662 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116723662 (bard1)
04121 Ubiquitin system [BR:
xhe04121
]
116723662 (bard1)
03036 Chromosome and associated proteins [BR:
xhe03036
]
116723662 (bard1)
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116723662 (bard1)
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
116723662 (bard1)
Ubiquitin system [BR:
xhe04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
116723662 (bard1)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
116723662 (bard1)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
116723662 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
Ank_2
zf-RING_6
Ank_5
Ank_3
Ank_4
BRCT_2
BRCT
zf-RING_5
zf-RING_10
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
116723662
NCBI-ProteinID:
XP_032424621
LinkDB
All DBs
Position
7:20743958..20769544
Genome browser
AA seq
800 aa
AA seq
DB search
MDNTTPLQTDGWKDTKEAVANFRRLLLCSKCSNLMEEPVCLGMCEHMLCRSCAGPRAGDG
CAVCLSPAWVKDIQINRQLSSIIQLFSDLESLLNPTEQPDSSVAEVSSQAEAAVPKRKKN
FKIWFSPRSRKVRCKVEKPLEITAPDRKSFEEQPAAQSNVLTAQCQDLSVFNFTSSSQDS
SSSQNESNVNSKGKKRSTKTATTRKVQGHTSATRRQTKENLKKKKLEAINQQWGITGNQN
PSSGPEPSCAVGARGSRKRVSFLSSSVSTDEAQAEASQVCELSLTNRTINVSLLGGEINV
LSHQSQHGQSTSSQMSSTNNPNLEDISKKETNTSPLESLSKRSKAVERNCSLETTPKRQR
ASSGQRRKSPSGNASPFTERLTLASPTSEKKKKHPREGKQHSPTVVALMSSDSHNKSMCS
PRSSFGRSSPGSPAIRKRNHRGETPLHLAAIKGDVDSVKELLDQGADPNLKDNAGWTPLH
EACNLGHLAAVKVLVARGALLNTPGYENDSPLHDAVRNGHAAIVKLLLQLGASQNVLNLH
GKRPADYAVSQEMLAIFQEAAEGIQYANSHTSHSPSATISASSESARRDQTLMLLASKLS
SREQRQLVKLGVLLRGRIVDTFSDSVSHVVVPEGQMPTTYSTLLGLLAGCWVVKYSWVKA
CLQAGKWLPEAEHEAGEGPQRSRINRCSLLPPLFDGCFFFLLGSFKGTTKDELAKLLREG
GGQLLRRQPKPDSDVTQTLNAAAYHAEPGSDQALCTQYIIYNPQGTYKPAVVRRGKVWSA
PSTWITDCIAAFSLLPVPQH
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atggataataccacaccgctacaaacagatggctggaaggacactaaagaggcggttgca
aactttcgtcgactgttgctttgctccaaatgctcaaatttgatggaggagccagtgtgt
ctggggatgtgcgagcatatgctgtgcaggtcttgtgctggcccccgggcaggagacggc
tgcgcggtgtgtctcagccctgcgtgggtgaaggacattcaaatcaacaggcagcttagc
agcatcatacagctcttcagtgacttggagtccctgcttaatcccacagaacaaccagac
tcctctgttgctgaggtcagttcgcaggcggaggctgcagtcccaaaacgcaagaagaac
tttaagatctggttcagtcctcgcagtcgaaaggtgcgctgcaaggtggagaagccttta
gagatcactgctccagacaggaagtcgtttgaagaacagcctgctgctcagtccaacgtc
ctcacagctcagtgccaggacctttcagtgtttaatttcacttcgtcctcccaagactct
tcatcttcacaaaatgaaagtaatgtaaacagtaaaggaaagaaaagatctacgaaaact
gctactacaaggaaggttcaagggcacaccagtgccacacgtagacagactaaagagaat
ttgaaaaagaagaagctggaggccataaaccagcagtggggaattacaggcaaccaaaat
ccctcatctggaccagagccatcctgtgctgttggagcaagagggtcccgcaaaagggtt
tctttcttaagctcttctgtctcgactgatgaggcccaggctgaagcctcgcaggtctgt
gaactcagtttgaccaaccgcacaataaacgtaagtctcttgggaggggagatcaatgtg
ctgagtcaccaaagccagcatggtcagagcacatccagtcagatgtcgtcaacaaataac
ccaaatctggaagacatttccaaaaaagagacaaacacgtctcccctggagagtctctcc
aaaagaagcaaagcagtggagagaaactgctccttggaaaccactccaaaaagacagagg
gcttcttcaggccaaaggagaaaatcacctagtggaaatgcttcacctttcactgagcgt
ttaactttagcaagcccgacaagtgaaaagaaaaagaaacacccgagagaaggtaaacag
catagtccgactgtagtagccctcatgtcttcagacagccacaataaatccatgtgcagt
cctcggtcgtctttcggccgttcaagccctggaagccctgcaataaggaagaggaaccac
agaggagagacccctctacatcttgctgcaataaagggagatgtagattctgtcaaagaa
cttctggatcagggagctgaccccaacctgaaagataacgccggctggacaccactgcat
gaggcatgtaatctgggccacctggcagctgtgaaggttttggtcgcaaggggagccctg
ttgaacacacctggctatgaaaatgattctccactccatgatgctgtgaggaatggacat
gcagccattgttaagctgctgctgcagctcggtgcctcacagaacgttcttaatctacat
ggaaagcgtcctgcagattatgcagtgagccaggagatgctggcgattttccaggaagct
gcagaaggaatccaatatgctaattctcatacatctcatagcccctcagccactatctct
gcgtcgagcgagagtgcgagaagggatcagactttaatgttattggccagcaagctatca
tcacgagagcagcgtcagctagtcaaactgggagtgctactgagaggaaggatcgttgat
accttttctgactcagtgagccatgtcgtcgtgccagaaggacaaatgcccaccacctac
tccaccctcctgggtcttcttgctggctgctgggttgtcaagtacagctgggtgaaagca
tgtctgcaggcgggaaagtggctgcctgaagctgagcatgaagcgggagaaggccctcag
cgcagtcgcatcaacagatgtagtttgcttccaccgcttttcgatggctgtttcttcttc
ctcctcggctcctttaaggggacaaccaaagacgagctcgccaagctgttgcgagaagga
ggcggccaacttctgaggcggcagccaaagcctgacagcgacgttacacagactctgaat
gcagcagcctaccatgcagagccaggctctgaccaggcactctgcacccagtacatcatc
tacaacccacagggaacctacaagccggcggttgtcagacgagggaaagtgtggtctgct
ccctcaacctggatcaccgactgcattgcagccttcagcctcctccctgtgcctcagcat
taa
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