Xiphophorus hellerii (green swordtail): 116723773
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Entry
116723773 CDS
T07363
Symbol
exosc2
Name
(RefSeq) exosome complex component RRP4
KO
K03679
exosome complex component RRP4
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116723773 (exosc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116723773 (exosc2)
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
116723773 (exosc2)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
116723773 (exosc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
ECR1_N_2
EXOSC1
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
116723773
NCBI-ProteinID:
XP_032424767
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All DBs
Position
8:15937887..15941411
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AA seq
293 aa
AA seq
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MAVDMRLPTVKNSMSLSHFPADRKDLVVPGDVITSDTGFMRGHGTYVDEDKLTASVAGEV
QRVDKLICVRPLKTRFNGEVGDVVVGRITEVQQKRWKVETNSRLDSVLLLSSVNLPGGEL
RRRSAEDELTMREYLQEGDLISAEVQSVFSDGALSLHTRSLKYGKLGQGVLVQLSPSLIK
RQKTHFHNLPCGASIILGNNGFVWLYPTPGQQEEEAGGFYTSLEPVSLSDREVISRLRNC
LLALAAHKVLLYDTSVLYCYESSLQHQVKDVLKPEVMEEIVMLTQQKLLEHES
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atggctgtggacatgagattaccgactgttaaaaactcaatgtctctttcacattttcct
gctgaccgaaaagatctggttgtccccggagatgttatcacttcagacactgggttcatg
aggggtcacggtacatatgttgacgaagacaagctgacggcatcagtggctggagaggtg
cagagggtggacaaactaatatgtgtcagacctcttaagacgagatttaatggtgaagtt
ggagatgttgtagtgggtagaattacagaggttcagcagaagcgttggaaggtggagacc
aactccagactagattctgtcctcttgttgtcatctgtcaatctgccgggaggagaactg
aggagaagatcagcagaagatgagctcaccatgagagaataccttcaagagggcgatctc
atcagtgcagaagtgcagtctgttttctcagatggagccctgtcacttcacactcgtagt
ttaaagtatggaaaattgggtcaaggagtgctggtgcagctttccccatctctgatcaag
aggcagaaaacgcatttccacaacctaccctgtggtgcatccatcatcttggggaataat
ggatttgtatggctgtatcccacgccgggacagcaagaagaggaagctggcggcttctac
accagtctggagcctgtgagcctttcagatcgagaggtgatttcacggcttagaaactgc
ctactggctttggcggctcataaagtgcttttgtatgacacaagtgttctctattgctac
gagtcgtctctgcagcaccaggtcaaggacgtcttaaaaccagaagtgatggaggagatt
gtaatgttgacacaacagaagctgctggaacacgagagttaa
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