Xiphophorus hellerii (green swordtail): 116723804
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Entry
116723804 CDS
T07363
Name
(RefSeq) laminin subunit beta-2-like isoform X1
KO
K06243
laminin, beta 2
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04510
Focal adhesion
xhe04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116723804
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116723804
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
Laminin_II
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
116723804
NCBI-ProteinID:
XP_032424850
LinkDB
All DBs
Position
1:complement(4267563..4354622)
Genome browser
AA seq
1797 aa
AA seq
DB search
MQAALLMLLCGLTATVGQEPDLAHGCAQGSCYPATGDLLVGREKNLKASSTCGMRKKERY
CIVSHLQDEKKCFECDSRRPYDPVYNTINHRIENVITTFKPHRKKSWWQSENGKSNVFIE
LDLEAEFHFTHLIMTFKTFRPAAMLIERSADFGRSWQIYRYFAHDCAVFFPGVSTGPLQN
INDVICESRYSDLEPSTEGEVIYRVLDPAIKIEDPYSPNIQNQLKITNLRLNFTKLHTLG
DTLVDNRAEIKEKYYYAIYELVVRGNCFCYGHASECAPIEGIRDDIEGMVHGRCVCNHNT
KGLNCEQCGDFYNDQPWRPAEGRNTHACKKCDCSDHSDKCHFDMAVYLATGNTSGGVCDD
CQHNTMGRNCEICKPFFYKDPTRHIRDSRVCIACDCDPDGSENGGLCDSHTDPSLGMVGG
QCRCKPNVEGPRCDKCKTNFFGLSANNPVGCQPCRCDSRGTVLGSSMCDPFSGDCICKRL
VIGRFCDQCLSEHWGLSHDLNGCRGCECDIGGALDNQCSIDSGQCRCRSHITGRDCTKVE
SGYFFMALDHFIYEAEFAQMGQGCTLETREHQPGRPAQWTDIGFAQVPQGGTLEFLINNI
PYSMEYDLVIRYESQMPRDWEEVQITVIRPGSIPTSSPCGNTIPDDDRLTIPLPAGARFV
VLPQPVCLERGVTYSLRLEFTRYQDANSILNGADYAVILIDSIVLMPRHSSMEMFNTGDL
ASNVRKQTFERYRCHEGARSVIRPQISDTCAKLISSMSAVINDGALACNCDPQGSISSLC
DPRGGQCRCRSNIIGRRCDKCAPGTYGFGPSGCIPCECSLDGSVTRLCDKYTGQCQCRPG
AFGQRCDGCQAGHWGFPSCRPCHCNGHANHCDQRSGVCINCRDNTGGDSCDRCANGYYGN
PVLGISSGGQCRPCPCPDGPHSGRHFATSCYQDSRNRQIICNCNQGYTGIVKRSGATVFK
RARCEECAPGYYGNPSQPGGRCQPCQCNNNIDMSDMDSCDRRMGECRKCLYNTEGPNCGI
CRSGYFGDASRRNCRKCICNFLGTERSQCMEREDCVCQRATGQCQCLANVVGLSCDHCAP
NHWNLASGNGCEACNCDPNNSVTSSCNEFTGQCQCREGFGGKTCTECEENFWGDPRTLCR
ACDCDWRGIETSQCNRATGHCVCQQGVSGVRCDQCARGFAGQFPNCQPCHQCFGDWDRIV
QDLAVRTKTLAERANEIQSTGLIGPYEKTFKDLEAKLAQAQAIVNARNATTAAVATLMAL
IEDLRAQIGETTEALNHVEGDLTIIHDRNSDASKELNTLEREARELNLTSEQLKHQLDIL
KNSNFLGAYDSIRSSYNMSRDAERRANQSTTTKPSTVSQSADTRRRTERLIASKKDDFSR
KNSANKRALGELKARAQGLDMKTLNEKICGSLDDVPCTENPCGGAGCRDDEGNRHCGGLN
CNGAVAAADNALERGKHAEKELNKAMGEMQELFTKVKEAKAKAEEAKGKAQAALDKAKAT
KNKVEHSNNNLRDLIKQIRDFLTQEGADPDSIEAVANHVLQLSIPASPLQIRQLADEIKD
RVRSLSNVDAILQQTQDDVQKAEKLLLDAKRARHRAEGLKNTAETVKQALVDAKTAQTSA
EKAIASARADIRDTENRLAEIETETSNSEKNLDDAMLRLGTLEQEINVLKTKRARNSMAA
ARAEETATMARDKANEAKQILDGQLTDKFNEVQQRVDTKAKVVRDAKKKAESLREEAKEL
LNDAQNKLQKLAELEKNYEENQRKLEGKVRQLDGLEDKMRSILNDINKQIQIYNTCQ
NT seq
5394 nt
NT seq
+upstream
nt +downstream
nt
atgcaagccgcgctgttaatgctcctctgcggcctgactgccacagttggccaggagcca
gacctagcccacggctgtgcccaaggcagctgttatccagcaactggggacttgttggtt
ggaagggaaaaaaacttgaaggcctcgtccacttgtggcatgagaaagaaagagcggtat
tgcatcgtcagtcacctgcaggatgagaagaaatgttttgagtgtgactccagacgacca
tacgacccagtctacaacaccattaatcaccggatagagaatgttatcaccaccttcaaa
ccacatcggaaaaagtcctggtggcagtcagagaacggaaagtcaaatgtttttattgag
ctggatcttgaggcagagtttcattttactcatctgattatgacatttaagactttccgc
cctgctgccatgcttattgagcgatcagcagattttggtcgaagctggcagatctatcgc
tactttgctcatgactgtgctgtttttttccctggagtctctacgggtcctttgcaaaac
atcaacgatgtgatctgtgaatcccgttactctgacctggagccatcgacagagggcgag
gtcatctacagagtcttggatccagctatcaagattgaggacccatacagccccaacatt
cagaatcaactgaagatcaccaacttaagactgaacttcaccaaacttcacacgcttgga
gacaccctggtggacaacagagctgaaattaaggagaaatactactacgccatatatgaa
cttgttgtacgtggaaactgcttttgctatggccacgcctccgagtgtgcacccattgaa
ggcatcagggacgacatagaaggaatggttcatggcagatgtgtgtgtaaccataacaca
aaaggtttgaactgtgagcaatgcggtgacttctacaatgaccagccttggaggccagct
gaaggccgcaacacacacgcttgcaagaagtgtgattgcagcgaccattcagataagtgt
cactttgacatggcggtctatttggccacgggaaacacgagtggaggggtgtgtgatgac
tgccagcacaacacaatgggcagaaattgtgagatctgcaaaccattcttctacaaagat
cccacaaggcacataagagactcccgtgtttgcatagcttgtgattgtgacccagatggc
tcagagaatggaggattgtgtgacagccacactgacccatcgctcggcatggtgggaggc
cagtgccgttgcaagcctaacgtagaagggccacgctgcgacaagtgcaagaccaacttc
tttggcctgagtgccaacaaccctgtggggtgccaaccttgtcgatgtgactccagagga
accgtgttgggcagctccatgtgtgacccattcagtggagactgcatctgcaagcgactt
gtcattggacgcttctgtgaccagtgtctatccgaacactgggggctgagccacgacctg
aacggatgtagaggttgcgaatgtgatattggaggggcactcgacaaccaatgctccatt
gatagtggtcagtgtcgctgccgcagccacataacgggacgcgattgcacgaaggtggag
tctggatatttttttatggctctggatcacttcatttatgaggctgagtttgctcaaatg
gggcagggttgcaccttagagaccagggaacatcagcccggtcgccccgcacagtggaca
gatatcggcttcgctcaggtccctcaaggcggcactttggagtttctgatcaataacata
ccttactctatggaatatgatttagtcatccgctacgaatcccagatgccccgggactgg
gaggaggtgcagataaccgtgatccgtccaggttccattcccaccagcagcccttgtggg
aacaccatcccagatgacgacagactcaccatccctctgccagccggagccaggtttgtg
gttcttcctcagccagtgtgtttggagagaggtgtgacatactccctccgcttggagttc
acacgttatcaagatgctaacagtatcctcaacggagcagactacgctgtcatcctcata
gactctattgtgctgatgccgcgtcactcctccatggagatgttcaacactggggatctt
gcctcaaacgtcaggaagcagacctttgagcggtaccggtgccacgagggagcaaggagt
gtgatccgcccacagatcagtgatacctgtgctaaactcatcagcagcatgtcagccgtt
attaatgatggagccctggcttgcaactgtgaccctcaggggtccatcagctccctttgt
gatccccgtgggggccagtgtcgatgcaggtccaacatcattggtcggcgctgtgacaag
tgtgcaccgggaacctacggctttggaccctcaggctgcataccatgcgagtgcagctta
gacgggtcggtgactcgactctgtgacaagtacaccgggcagtgccagtgccgtcccggg
gcgtttggtcagagatgcgacgggtgtcaggcgggtcattggggctttcccagctgccga
ccctgccactgtaacggacatgccaaccactgtgaccagagaagcggagtctgcatcaac
tgcagggataacaccggcggggacagttgtgacaggtgtgccaatggttattatgggaac
ccagttttgggtatatcatctggtggtcagtgtcgcccgtgcccatgtccagatggaccc
cacagtggacgccactttgccacatcttgttaccaggacagccgcaatcgacaaattatc
tgcaactgtaaccaaggttacacagggattgttaaacgctccggggcgaccgtttttaag
cgcgcccggtgtgaagaatgcgccccaggttactacggcaacccctctcagccgggaggg
cgctgccagccatgccagtgcaacaataacatagacatgtcagacatggactcatgcgac
aggcggatgggggagtgcaggaagtgcctttacaacacagagggccccaactgtggcatc
tgcaggagcggatactttggagatgcatcccgacgcaactgcaggaagtgcatatgcaac
tttttgggcacggagcgcagccagtgcatggagcgtgaagactgtgtgtgccagcgtgcc
acgggccagtgtcagtgtctggcaaatgtggtaggtctgtcgtgcgaccactgcgccccc
aaccactggaacctggccagtgggaatggctgtgaagcatgcaactgtgatcccaacaac
tctgtcacatcctcctgcaatgaatttacagggcagtgtcaatgccgagaagggtttgga
ggaaagacctgcacagaatgtgaggagaacttctggggagacccccggactctgtgcaga
gcgtgcgactgtgactggcgtgggattgagacgtctcagtgcaaccgcgcgaccggccac
tgcgtctgccagcagggggtgtcgggcgtccgctgcgaccagtgtgccagaggctttgcc
ggccagtttccgaactgccagccctgtcaccagtgcttcggggactgggatcggatagtg
caggacctggcagtacgcaccaagactcttgcggagcgagccaatgagattcaaagcact
gggcttattggaccttatgagaaaaccttcaaagacctggaggcgaagctggctcaagct
caggccatcgtcaacgcaagaaatgccacgactgcagctgtggctactctgatggctctt
attgaggatctcagggcacaaattggtgagacaaccgaagccctaaaccacgtggaggga
gatttaacaatcatccatgaccgaaactctgacgcaagcaaggagctgaacactctggag
cgggaggctcgagaactgaacctcacatctgagcagctaaaacatcaactggatattctg
aaaaactctaacttcttaggagcgtatgacagcatccgcagctcctacaacatgtctcga
gatgctgagcgacgggccaaccagtcaaccaccaccaagcctagcacggtcagtcagtcg
gcagacactcgccgccgcaccgagcgcctcattgcctcgaagaaggacgacttcagtcgg
aagaactcagcaaacaagcgagcactgggggagctgaaggcccgagcccagggtctggac
atgaaaacgctcaatgagaagatttgtggttctctagacgacgttccctgcacggagaac
ccctgtggaggagctggttgccgtgacgacgaagggaaccgtcactgcggaggcctgaac
tgcaacggagccgtggctgcagctgacaatgctttggagcgaggcaaacatgcagagaag
gagctgaacaaagccatgggggagatgcaggaactcttcaccaaggtaaaagaagctaag
gccaaggcagaggaggctaagggtaaagcccaagctgctctggataaagccaaggccaca
aagaacaaagtagagcactccaacaacaacctcagagacctgatcaaacagatcagggac
ttcctcactcaggagggagccgatccagacagcatcgaggcggtggcgaaccacgtgctg
cagctctccatccccgcttcaccgctacagatcagacaactcgctgacgagatcaaggac
cgcgtccgcagcctgtccaacgtggacgccatcctgcagcagacgcaggatgacgttcaa
aaggcagagaaactgctgctggacgccaagagggcaaggcatcgtgctgagggattgaaa
aacacagcggagacggtgaagcaggccttggtggatgctaagacagcccagacttcagct
gagaaagccatagcgagtgccagggcagacatcagagacactgagaatcgactggctgag
attgagacagaaacctccaacagtgagaagaacctggatgatgcaatgcttcgcctcggc
acacttgaacaggagatcaatgtgctgaagaccaagcgagccagaaacagcatggcggca
gcccgagctgaagagacggccaccatggctcgggacaaggcaaatgaagccaagcagatt
ctagacggccagctgacagacaaattcaatgaggtgcaacaacgagtggacaccaaggcc
aaggtcgtgcgggacgccaagaagaaggcagagagtctccgagaggaagccaaggagctc
ctcaacgatgctcagaataagctacagaaactagcagagctggagaaaaactatgaggag
aaccagaggaagctggaggggaaagtccggcagctggacgggttggaggacaagatgagg
agcatcctcaacgacataaacaaacagatccagatctacaacacgtgccagtaa
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