Xiphophorus hellerii (green swordtail): 116723843
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Entry
116723843 CDS
T07363
Symbol
slc35c2
Name
(RefSeq) solute carrier family 35 member C2 isoform X1
KO
K24357
collagen type XX alpha
Organism
xhe
Xiphophorus hellerii (green swordtail)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
FN3_Tor_3rd
VWA_2
NDNF
DUF4959
YjeF_N
Motif
Other DBs
NCBI-GeneID:
116723843
NCBI-ProteinID:
XP_032424925
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All DBs
Position
1:4502202..4545845
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AA seq
1564 aa
AA seq
DB search
MSSHLLASRPSSLRPMLCFLLSVFLLLSSGVHGQGRLKLTVLSEDRLQMKWKEADGPVQG
YKVRVRTMSEEQQPELMLTTTRGRATVAGLDSSQEYSLQVFVLNGTTEKLLAKRRFTLEG
LREEEMIRSGSRENRRKLIPGGSASGDLDDSTAVLLDLPTVLFPEPTLTTAATVSTAEPS
ASASEYPDEPPEKSTREKRKRKKEKEQHSSTVENKEEHGMKQGFPQRKPYECESDTAADI
MLLVDGSWSIGRTNFRRVRDFLEGLVTPFNIGPNHIQIGLTQYSGDPRTEWHLGNFTTKE
QLLEAVRNFRYKGGNTFTGQALLHVMEENMKPKAGARASAPFFLVLLTDGKSQDDAIAAA
NRLKNAGVEIIAVGVKNADEAELRQVASEPVDLNVYNVNDFPLLSKLVARLVHILCRRIE
DRGISKRMEPAPTTQPGLSFPSPTDLRFSQLGSRQVKLHWTNPAQPVQQYRVVYHSAESQ
SPQEVVLSGSESTVLLDGLSSQTLYHISIFPVYTSSVGLALRGTVTTLPLAMPTDLEVTP
SSYSTLQVSWSPAPGATHYMILYSALSDGEPEDAKEEKFSAGQTVVELAGLLPETDYSVT
LYALYDEEPSDPVTSVSRTLPLPAPVGIHFPIVTHSMIKVSWVPGAVDVPGHRITYSTNH
GSDTKQMEVKGQNSVVLQSLSSLSRYLVSVQSHYPQGLSATLTSNVTTLKVPSPSDLKVT
NFSGSEIMVRWAAAADDVVYYLIKWISLSEGDLRQLKVNGDNEGAILEGVEEDKEYQISL
SALYGDGAQSEAVAIRYSTLSGGGPSSVSVSEETAVSMLVNWVPPNAHVLQYRVSYTPLT
GAETQDGTVLVPGGHKQVVLESLQPDTRYSILVTAEYRNREGGSGSAQGKTASLRVSSIS
VVRSDHSSVCLSWRPVLAVDGYRVVIQSVKDKQVKQETVSESTNSYCFNHLEPETLYRIS
VHSLLGSAEGAAVSILHPTAPAPARIPIPPRTYPVHNEVCPEVTIQNGIVKGFDMMEAFG
LTREAHSSVEGVSAEPFVFNTLPAYTVYRDVQLTQSTKFIHPAGFSPEHTISITFRLLQD
TPMEAFALWQLTDNDFQPKMGVVIDPSSQLLMYFSLDYRGEVQELTFDQPQVHKIFYGSF
HKVHLSVSQVSVSLSVDCQPVGERPARPLGNLPTDGFEMLGKLVKTRGPKSGSAPFQLQS
FEIICNNTWASMDTCCDLPGVRDEESCPAPPYACTCSSNVQGAPGLPGPIGKPGPRGEKG
DKGEQGSKGEVGPPGKAGFEGGLGPVGSIGPRGITVQGKIGPPGARGEKGDPGRPGVQGS
PGPPGPKGEEGIPGPRGIRGAEGNIGAPGITGTRGFQGLPGYPGPVGERGPFGPVGPTGL
PGNKGERGEKGEPQSMAMIYQLVTQACEQLVHKEVLKLDMYINEISRKPVPIEEPVGPPG
EPGIPGSRGPPGARGNQGSVGSRGRPGRPGYPGEQGRRGIPGEKGSLGNNVQGPSGIKGL
AGPPGESKPGVPGPKGNDAKPGPPGTTGPSGQPGEIGPQGMCDSSGGCRNVPQQTEDPYY
DYQP
NT seq
4695 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctcacctccttgcatccagaccatcgtctctaaggccaatgctgtgtttcctg
ctcagtgtcttcctgctgctgtcctcaggagttcatggccagggtcgtctgaagctgacc
gttctgtctgaggaccgattgcagatgaagtggaaagaggctgatggtcccgttcaagga
tacaaagttcgggtcagaacaatgtcagaagagcagcaaccagagctgatgctgaccacc
acccgaggccgggcaacagtggcgggactggactccagtcaggaatactccctccaagtc
ttcgttctgaacgggacgacggagaagcttctggcaaaaaggcgattcactttggagggt
ctgcgagaggaggagatgatccgcagcggtagccgtgagaaccgtaggaagttgatccca
ggcgggtcggcctcgggggacctggacgattcgacggctgttctgttggacctgccaaca
gttctgtttccagaacccactcttaccactgctgccaccgtctctactgcagagccctca
gccagcgcttccgaataccctgatgagcccccagagaaaagcaccagagagaagaggaag
aggaagaaagagaaggagcagcatagttccacagtggaaaacaaggaggagcatgggatg
aaacagggctttccccagaggaagccatatgagtgtgagagtgacacggcggcagacatc
atgctgttggttgacggttcctggagcatcggacgcaccaatttcaggcgggtcagagac
ttcctggagggtctggtgacgccgttcaacattggaccaaaccacattcagatcgggctg
acccagtacagcggagaccctcgcaccgagtggcacctgggtaacttcaccacaaaagag
cagctgttggaggcagtgaggaatttcagatacaaaggaggaaacacatttacaggacag
gcactgctccacgtcatggaggaaaacatgaagcctaaggcaggagcgcgagccagtgca
ccattttttctggttctgttgactgatgggaagtctcaggacgatgccattgcagcagct
aaccggctgaagaatgcaggcgtggaaatcatcgctgtaggtgtgaaaaatgcagatgaa
gctgaattgaggcaggtggcatcagagccagttgacctgaacgtctacaacgtaaatgat
ttccccctgctcagcaagctggtcgctcggctggttcacattctgtgcaggaggatagag
gaccgtggcatctcaaaacgaatggagcctgcacccaccacacagccaggcctctccttt
cccagtcctactgatctgcggttttcccaacttggatccagacaagtgaagctgcactgg
accaatcctgcccagcccgtccagcagtacagagtggtttaccacagtgctgagagtcag
agtccacaggaggtggttttatccggctctgaatccactgttctgctcgatggcctctca
tctcagacactctatcacatctccatattccctgtgtacaccagcagcgttggcttggcc
ctcagaggaactgtcactacattgcctctggctatgccaaccgacttggaagtgactccc
tcctcttacagtactctgcaagtaagttggagtccagctcctggtgcgactcattacatg
atcctatactcagcactcagcgacggagagcctgaagatgcaaaggaggagaaattcagc
gcaggccagacagtggtggagcttgcaggcttgctgccagaaacagactactctgtcact
ctttatgctctctatgatgaagagcccagtgatccagtcacttcagtttcccgcacatta
cccctcccagctccggttggaattcacttcccgattgtaacccacagcatgataaaggtg
agctgggtccctggtgctgtggatgtcccaggccacagaatcacctacagcaccaatcat
ggcagtgacaccaagcagatggaggtcaaaggccagaactctgtggtgctgcaaagcctt
tcatctctgtcccgatacctggtttcagtccagtcccactacccgcaaggcctgtctgcc
acactcaccagtaacgtcacaacactgaaggtgccttctccatcagatctcaaggtgact
aatttctcgggcagtgaaattatggtacgctgggcagcagcagcagatgatgtggtctat
tacctcatcaaatggatctctttaagtgaaggagacctgaggcagctgaaggtgaatgga
gacaatgaaggagcgatcctggagggagtggaggaggataaagaataccagatctctctg
tctgcactttatggagatggagctcagagtgaggctgttgccattcgatacagtaccttg
tcaggcggaggcccgtccagtgtatccgtgtcagaagaaactgcagttagcatgttggtc
aactgggtgcctccaaatgctcacgtcctccagtaccgggtttcttacacaccactgacc
ggagctgagactcaggatggaactgtgttggtccccggtggtcataagcaggtggtgctg
gagtcattgcagccagatacacgttatagcatcttagtcactgcagagtatcgcaacaga
gagggaggcagcggctcagctcaaggcaaaaccgccagtctacgtgtgagcagcataagc
gtcgtcaggtcggaccactccagtgtctgtttgtcctggaggcccgtgttggcggtcgat
ggataccgtgttgtcattcagtcagttaaagacaagcaagtaaaacaggaaactgtgagt
gagtccaccaatagctactgcttcaaccacctggaacctgaaaccctgtatcgcatcagc
gtacattcgcttcttggctctgcagagggcgctgccgtctccattctccatcctacagct
ccagctccagccagaattcccattcctccccggacatatcctgtacacaatgaagtctgt
cctgaagtcaccatccagaatggcattgttaaaggctttgacatgatggaagcgtttggt
ctgacgcgggaagctcactcatcagtggagggagtgtcagccgagccatttgtcttcaac
actctgcctgcctacaccgtgtacagagatgtgcaactgacacagagcaccaagtttatt
caccctgccggtttctctccagagcacaccatcagcatcacttttcgcctgctgcaggac
acaccgatggaggcctttgctctctggcagctcactgacaatgacttccagccaaagatg
ggagttgtgattgatccttctagccaacttctgatgtacttcagcctggactacagggga
gaagtgcaggagctcacctttgatcagccacaggtccacaagattttctatggaagtttt
cacaaggttcacctgtctgtcagccaggtgagcgtctccctgtctgtggactgtcagcct
gttggtgaaaggccagcccgccctctgggaaacctaccaaccgatggattcgagatgctg
ggaaaactggtgaaaaccagaggacctaaaagcggctcagccccgttccagctacagtcc
tttgaaatcatctgtaacaacacatgggcttcaatggacacctgttgtgacctgcctgga
gtgagggatgaggagagctgccctgctccaccgtatgcatgtacctgttcctccaacgtt
caaggagctccaggcctccctggaccaattgggaaaccaggtcctcgaggggaaaaaggt
gataagggagaacaagggtcaaagggagaggtgggccccccaggtaaggctggatttgag
gggggtcttggacctgtgggcagcattgggccccgaggcataacagtccaaggcaaaatt
ggtccaccaggagccaggggggaaaaaggagatcctggcagaccaggagtgcagggttca
cctggacctccaggtccaaagggagaagaggggatcccaggccccaggggtatcagaggt
gcggagggaaacataggtgccccgggcattacgggaaccaggggtttccaaggacttccg
ggatacccaggacctgtcggggagaggggtccctttggacctgttggaccaacgggtctg
ccgggaaataaaggggaacgaggtgaaaagggggaaccacagtctatggccatgatctac
cagctggtcacacaggcttgtgaacaactagttcacaaggaggttttgaagcttgatatg
tacatcaatgagattagtcgaaagcccgttcctattgaggagccggtgggtcccccaggg
gagcctggtataccagggtccaggggcccacctggtgccaggggcaaccaggggagtgtt
ggctcaagagggagacctgggaggcctgggtatccaggagagcaaggacggagagggatc
cctggagaaaaaggaagtttggggaataatgtccaggggccctcagggattaaagggctt
gcaggtcctccaggggagtccaagccaggggtcccaggtccaaaaggaaacgacgccaaa
ccagggccaccagggaccactgggccttcgggtcagccaggagagattggaccacagggg
atgtgtgacagcagtggaggctgtcgaaatgttccccaacaaacagaagacccttattac
gactaccaaccctga
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