Xiphophorus hellerii (green swordtail): 116723940
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Entry
116723940 CDS
T07363
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X1
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhe03021
]
116723940 (taf1c)
Transcription machinery [BR:
xhe03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
116723940 (taf1c)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Rrn6_K-rich
Beta-prop_WDR36-Utp21_1st
Motif
Other DBs
NCBI-GeneID:
116723940
NCBI-ProteinID:
XP_032425056
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All DBs
Position
8:complement(2101284..2118523)
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AA seq
933 aa
AA seq
DB search
MDYQFPRQLFPSFYSCDPPNRVQRHCAGGWGCYHGVLAQGGTGSLSSWAFTSKRQLGGEV
WRQTEPVPVPLLSPRKAFQEFLTPPDPLDFLKHMQNFYMDHGPDAFGCMSEILGENFYFK
KAKMKEQYRKDSVNMWRTKCFVDQLKFNMCPMAYRSRYLDRFCSLLWDVVHDVPPELLGS
LLHEELAEQRDRMQFSEAATGGALAFVPFSQGEGCLLYPGGPGMDRLNFHRVALERDGVD
AGGRKPVGFQLKAPVRQISCGSRFGDSCVAVRTDHVCGVWGMREQEEPRLLQVVGTRAAA
SCVSVSPHILGEVLVASESGAANLWTVGRGMQEVRTEESNLYFNAKSSWRWCEFSAHPRV
MLYADRTGVELTDFRVKLDSNPCHTLFRISSTSDCQSGERLLLVRFLGDVHPFHHLLTTQ
HSAYIMDERFPGVPMLKWDHMMEAPPLFCHVAPGSASGTTKVLLGSQSSQEITLLQYSGG
RVEACCSHGSPQVLLRPRDSLALLPVQIPHRQQTAAHRLASPAAGLTCLQKTSVSTATMI
VLQLTAAGDVFYQILERDDGKPGAPETGAPETGAPETGARSPLLVAETSSDEDVVMPTQD
PNSHTFVPETPDRNQSSDRLPDQIPAFVAVGNEADWSAPSVLSSATRHAWRRWLQKLRRR
EGKPGAPPHLAVRTAGLLSVAEPGAAGRHLQGALQQDLQRCMRTRSLLLNRDLDPVPVPP
AVDAEAWCDPLSNRLTAAWRGGKEAWLEWWQEERGENRAMKKEALRRRRRREKEAQRAAG
RHLRLSGSFTSSISYQTDVDDFSGWSSGTSVPLSDSQWSRPLGRLAAFLEDQDDLPPPDR
LDPPSRTPEPQTANQRSWNLADQSLSSLWETQVGMMLPPPGFRREDPPLHPAPSSSSSQL
PSFPSLTPSKASQSQRGALQASQPKKKKSRMGF
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atggattatcagtttcctcggcaacttttcccctcgttttacagctgcgacccgccgaac
cgggtccagagacactgcgcaggaggatggggctgctaccacggagtcttagcgcagggc
ggcaccggctctctctccagctgggcgttcacgtccaaacggcagcttggaggggaggtc
tggcgccagacggagccggttccggttcccctgctgtcccccaggaaagcgttccaggaa
ttcctgacgcctcctgatccgctggacttcttaaaacacatgcagaacttctacatggat
cacggcccggacgccttcggctgcatgagtgagatcctgggcgaaaacttctacttcaag
aaagccaagatgaaggagcaatatcgtaaagattcggtcaacatgtggaggacgaagtgc
ttcgtcgaccagctgaagttcaacatgtgtcccatggcgtaccggtccaggtatctggac
cggttctgcagcctgctgtgggacgtggtccacgacgttcccccggagctgctgggctcg
ctgctgcacgaggagctggccgagcagagggaccgcatgcagttctcagaggcggccacc
gggggcgctctggccttcgtcccgttctcgcagggcgagggctgcctgctgtaccccggg
ggcccgggaatggaccgcctcaacttccacagggtggcgctggagcgcgacggcgtggac
gccggcggccggaagccggtcggcttccagctgaaggctccggtccgacagatcagctgc
ggctcgcgcttcggcgacagctgcgtcgccgtgcgcaccgaccacgtctgtggagtctgg
ggcatgagggaacaggaggagccgcgcctgctgcaggtggtcggcaccagagctgctgcc
agctgcgtcagcgtcagtccgcacattctgggtgaagttctggtggcgagtgagagcgga
gcggcgaacctgtggacggtcggcagagggatgcaggaggtccggacggaggagagcaac
ttgtacttcaacgccaagtcgtcatggcgatggtgcgaattctccgcccacccacgagtg
atgctgtacgccgaccggacgggggtggagctcacagacttcagggtgaagttggactcg
aacccgtgtcacactctgttccggatcagcagcacctcagactgccagagcggagagcgc
ctcctcctggtcagattcctgggagacgttcacccctttcaccacctcctcaccacgcag
cactcggcctacatcatggacgagcgcttccccggcgtccccatgctgaagtgggaccac
atgatggaggctccgccccttttctgccacgtggctccaggctccgcgtcaggaaccacc
aaggttctgctcgggtcgcagtcgtctcaggagatcactctgctgcagtactcaggaggc
agagtggaggcgtgctgcagccacggttctcctcaggttctgctccggcccagagacagt
ctggctctgctcccggtccagatcccccaccgtcagcagaccgccgcccacagactggct
tcaccggctgcaggcctgacgtgtctccagaaaacgtccgtctccacggcgaccatgatt
gtcctccagctgacggcagcgggggacgtcttctaccagatcctggagcgggatgacgga
aaacccggagcgccggagactggagcgccggagaccggagcgccggagaccggagctcgc
tccccgctgctggttgctgaaacgtccagcgacgaggacgtcgtcatgccaacgcaggat
cccaactctcacacgtttgtcccagaaacgcccgacaggaaccagagttctgatcggctt
ccggatcagatcccggcgttcgtcgccgttggtaacgaagcggattggtcggctccctcg
gtgctgagcagcgccacgcgtcacgcctggaggcgctggctgcagaagctgaggagacgg
gaggggaaacccggcgctccgccgcacctcgcggtccgaaccgctggtctgctgagcgtg
gcggagcccggcgccgccggacgccacctgcagggggcgctgcagcaggatctgcagcgc
tgcatgcggacgcggtcgctgctgctgaatagagacctggacccggttccggtgccgccg
gcggtggatgccgaggcgtggtgcgacccgctgagcaaccggctgacggcggcgtggcgc
ggcggcaaggaggcgtggctggagtggtggcaggaggagcgaggggagaaccgggccatg
aagaaggaggcgctgaggaggaggaggaggagggagaaggaggcgcagcgcgcggcgggg
cgccacctgcggctcagcggcagcttcacctcctccatcagctaccagacggacgtggac
gacttctccggctggtcctcaggaaccagcgtcccgctgtccgacagccagtggagcagg
cctctgggccggctggccgccttcctggaggatcaggacgacttgccgccgccggaccgt
ttggatccgcccagcagaactccagaaccacaaacagccaatcagaggagctggaatctg
gccgaccaatcactgagctctctgtgggaaacacaggtgggaatgatgctgccaccacca
ggtttcaggagggaggatcctcctcttcatccagccccctcctcctcttcctctcagctg
cccagcttcccgtctctgacgccctccaaggcgtcgcagagccagcggggggcgctgcag
gcgtcccaacccaagaagaagaaatcccggatgggattctga
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