KEGG   Xiphophorus hellerii (green swordtail): 116724096
Entry
116724096         CDS       T07363                                 
Symbol
nup54
Name
(RefSeq) nucleoporin p54 isoform X1
  KO
K14308  nuclear pore complex protein Nup54
Organism
xhe  Xiphophorus hellerii (green swordtail)
Pathway
xhe03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:xhe00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    116724096 (nup54)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xhe03019]
    116724096 (nup54)
Messenger RNA biogenesis [BR:xhe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     116724096 (nup54)
SSDB
Motif
Pfam: Nup54 Nup54_C
Other DBs
NCBI-GeneID: 116724096
NCBI-ProteinID: XP_032425336
LinkDB
Position
8:complement(19394312..19401324)
AA seq 621 aa
MAFSFGGAATNTGAGTSGFSFGQFGAKTTASTTFGFNPTATTTTASSGFGTLTAPAFGAA
TTTTAPATGFSFGASNTGFGGLGAGSTTAGGFSFGGFGLNANPAAISFSTGCFGTATTAG
SVFNFGNSLASTGAFGGFGTTTTTAAAPGSTFNFAPSNTTGSLFGNTQNKGFGFPSGLGT
GATAGATGFGTGLGTTGLGFGGFNIQPTQQQQGGLFGQPAQQQGQAQPTQLYQQVTALSA
PTLLGDERDSILAKWNQLQAYWGTGKGYYVNNNLPVDFTQENPFCRFKAVGYSCVPVSKD
EDGLVVLVLNKKEPDVRAQQQQLVESLHKVLGSNQTLTVNVEGVKALPNDQTEVIIYVVE
RSPNGTSKRIPASTLFTFLEQANIKAQLTQIGVVMSVTRTELSPAQLKQLLQNAPAGVDP
IIWEQAKVDNPDPEKLIPVPMVGFKELLRRLQIQEQMTKQHQTRVDIISNDISELQKNQA
TTVAKIAQYKRKLMDLSHRVLQVLIKQEIQRKSGYAIQVDEEHLRVQLDTIQSELNAPTQ
FKGRLNELMSQIRMQNHFGAVRSEERYNVDADLLREIKQHLKQQQEGLSHLISVIKDDLE
DIKLIEHGLSDGGHMRGGILS
NT seq 1866 nt   +upstreamnt  +downstreamnt
atggcgttcagttttggcggtgccgcgactaacacaggggcagggacgtccgggttttca
tttggtcagtttggtgccaaaaccacagcttcaacaacgtttggttttaacccgacagcg
accactaccaccgcttcttcggggtttggcactctgacggctcctgcttttggcgcagcc
acgaccacaactgcaccagccacaggatttagttttggtgcctccaacacaggatttggg
gggcttggagctggaagcaccacagctggtgggtttagctttggggggtttggtttaaat
gcaaacccagcagcaatcagcttcagtacaggttgcttcggtacagcaaccacagctggc
tctgttttcaattttggtaatagcctggctagcacaggtgcgtttggtggctttgggaca
actacaacaactgctgccgcaccaggatccactttcaactttgccccctccaatacaaca
ggaagcttgtttggtaacacacagaacaaagggtttggattcccatctggactcggaact
ggtgccactgctggagcgacaggctttggaactggattaggaacaactggcctcggtttt
ggaggttttaacatccagccgacacaacagcaacaaggaggcttgtttggccagccggcc
cagcagcagggtcaagctcagccaacccagctttaccagcaagtgaccgctctgtcagcc
cccactcttctgggagacgaacgcgactccatacttgccaagtggaaccagttgcaggct
tactggggaacagggaagggctactatgttaacaacaacctaccagtggactttactcag
gagaaccctttctgcaggttcaaggcagtggggtatagctgtgtcccagtaagcaaggac
gaagatggtttagtggtgttggttctgaataaaaaggagcctgatgttcgtgctcagcag
cagcagctggttgagtcactgcacaaggttctgggaagcaaccagactctgaccgtcaat
gtagagggcgttaaagctctgcccaacgatcagacagaggtgatcatttatgtggtggag
cgttcccccaatggcacctccaagaggatcccagcttccacgctcttcaccttcctggag
caggccaacatcaaggctcagctcacccagattggagtggtcatgtcagtaacacgcaca
gagctgtccccagcacagctgaaacagctgctgcagaacgctcctgcaggtgtggatccc
atcatttgggaacaagctaaggtggacaaccctgacccagagaagttaatccccgtaccc
atggtgggtttcaaggagctgctccgcagattgcagatccaggagcagatgaccaagcaa
caccagaccagagtggatataatctccaatgacatcagtgagctgcagaagaaccaggca
acaactgtagccaagatcgctcaatacaagaggaagctgatggatctgtctcacagggtg
ctgcaggtactaataaagcaggagattcagagaaaaagcggctacgctatccaagtggat
gaggagcatctgagggtgcagctggacaccattcagtcagaactcaatgcacccacacag
ttcaagggtcgattgaatgagctgatgtctcaaattcgaatgcagaaccactttggagcc
gtgagatcagaagagcgctacaacgtcgatgcagatctcctccgagaaatcaaacaacac
ttaaagcagcaacaagaaggcttaagtcacctgatcagcgtcattaaagatgacttggag
gacatcaaactcatagaacatggactaagcgatggcggccacatgagagggggcatcctg
agctga

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