Xiphophorus hellerii (green swordtail): 116724187
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Entry
116724187 CDS
T07363
Symbol
bdp1
Name
(RefSeq) transcription factor TFIIIB component B'' homolog isoform X1
KO
K15198
transcription factor TFIIIB component B''
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhe03021
]
116724187 (bdp1)
Transcription machinery [BR:
xhe03021
]
Eukaryotic type
RNA polymerase III system
Basal transcription factors
TFIIIB
116724187 (bdp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-bind_7
Myb_DNA-binding
Motif
Other DBs
NCBI-GeneID:
116724187
NCBI-ProteinID:
XP_032425542
LinkDB
All DBs
Position
8:23098541..23113724
Genome browser
AA seq
2157 aa
AA seq
DB search
MFRRSRFSVRPNVGTVGRTAAGTPQETPAASQETSQTQKEPNESNNASLASNSDVTPSEN
APSTGDGNDQNGDGASSSASVQRRKRFSIKPKVAPGRPLAISRTPKSPVKAVTAPSGDGV
CGSDLEKPLTSSQPAKTAAPRGLQSPRRRRLSEDAKQHKIQPKVGPVSSEKPGPSSDSPS
EDSPRPTHLPADRSKQLENTSTSQAKEVHSRAHDRVPPSIPDKEATEISEKAKTLISSKN
VTSMTPSAMSLSRLLNDPSDVQRMLKARRLRELLRQERCKETNLKRAKARRKEYILDPTK
MTMRDLIHYLPESNPMRPSLEEHHEENETMIPPSPRREEPTERPPVPEVTPAKVNTREEE
EEEEEEDAAAEEDQEESLMVPQLKVAEDGSLIIDEESLTVEVQRAKGPNPASDRDPIFER
GSTTTYASFRKSNYSKPWSIEETDMFYLAVSMVGTDFSMICQLFPHRARSEIKNKFKKEE
RQNSWRIDKAFRERRKLDIEYFSKLLEKIMEFQREKKKLKSLVGKNNKRKARTRPKGKKS
AKSLSDMEEEEEEEKEEDDEIPDLEKENEDQCNEGETPASEPKKKRKRKNGEASPEETNE
KKNKTGDVPEDSEPALPESHTDSEMTPNVNTTKDPVINPAKLSRARAPKPLLPLGLTRGK
KGKSEETQSDKGDKNASEEEQVNKNESNARKTSREKFSGDDISSEEEEETVKHQGPTRYG
RIPKPNLAFAYPSKDELHSSEAETSSASKSKPKGALKRGKSLKPQSDQKPKKSKLVTLRS
SRPDFSDDEDDEDAGCSSGKGIMSSGLHSLNAVISEVDDPMAELDILASMPDMLGISQDA
LCPDSSCHQTQYETSTAETCDHQLDLLVDVIDIITSEQTELSQDDSYNEAAQTLLTIGKV
SHVSMSTQGEVTTQASTSGMATDGEKSDHLDEQIVADAQPQSALSAACSQTGGEISETVA
SVDPGNLEMRHSDTSHVKTIEPTCDELKTAQSSNGNSPSTKVARFSKVKPKPNLGQSSRT
APPTIQMEISKKKEAEERHSVGAVEASPKRADSDEALLEDGDSPKDVQLTEEKSGSSSIT
QGCSMSLSQVECSGNEVPRGTNSPNRKDVSVAPHDRTVESDLSSSLESKSELTHIVPEPC
TPSDSIQDSSSKHLPAEKDLPANQKSMDVSAPRRSRLSKIKPNLPQMSRTAMNKSQISKE
TVKTDPLTTSNSESQKQTILDVKTQSTSFLSGNVDVSPQAERQNTLKVLSSPETQAEYKS
NVELVAAPEHSCSPATSISPIENKPANKQESSVTSAQLRRSHLQKVKPKPNLTQTSRGKI
TKPQATEDTAMKSSIESTQIHLEDTDCASRLNPILASDSVHESTAKQVTNKPAPTEVVIH
VDMEHRPVDQGQKQTSIKSCSTFKSTDKASDSLDETSEISCSSAMTSHVSRTNFDSDQDR
RGQPAVSVRPEEESAVCKPDGENATSEQLRKNRISKIRLGPNISQASRASKLKPRTSESQ
SEKHANPEPDPDPTCSPSLDKQSENDNLVMELTAPITSQSSEMKKTLSEAKKQNFDANPQ
STSSENLIGATSSTFSSNNPTVKEPQFGQGSNLNSGADLERSNLSACFAPSKELQVNQKE
DKVPSAQLVKRSRSQKPKPNLSQTSRPVRSKADDKSEVQPQLGAQQTIAKKEKYSEFTDA
NLTAQGGPSESMNVSQTVKSAITSNSKIGSSAQDQTEPCAASASDQTGDKSNTGNSTTTQ
AVRRPQSPASEQNRETEEKVLTNVEVSSSAVTEKTPQRRQRFSKVKPKPNLEKTCRVAVR
SLQLDDHSRPLEDQSKGMSSVALEQPLESTKDKMSDKDPTNSDCLPSGDCNLAIKPKPNL
HCSGRLRQTQPAENTKPTETDSDSTSQAFGASREIKKSVRELKADTHDPEKGVIEKSSEK
DSSSIDSRSSHSRVKPQSSYGHETSRAEAIQRDPLLSQILPEQVPSDPDEPFFILSLTEI
PVPSAGEVGASGAQNLSYCPAAGASGQQPSVSEVSLKAEENHPEVSVEPKVFKNSIAGPN
EKAGDDLGDKETLLSRKAKVSEASVAETRSSKCRKAASKRNQKETPTKAEQTSSKPTASA
SNSNIPSQTEAAADCAHIGLRSTALTSPERESGFVDNEPTSVSQYFLSDIFTEVDEG
NT seq
6474 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgtcggtcgagattcagtgttcgccccaatgtcggcacggtcgggagaacggca
gcaggaacgcctcaagagaccccagcagcaagccaggagacaagtcagacccaaaaggaa
ccaaacgagagcaataacgcttctctagcaagcaactctgacgtgaccccatcagaaaat
gctcccagtacaggcgatggcaatgaccagaacggggacggcgccagctcctcggcatca
gtccagagacggaagcgcttctccatcaagcccaaggtggctcctggacggcctctggcc
atctcccggacaccaaaatcccccgtcaaagcagtcaccgcgccttcaggcgacggcgtg
tgtgggtcagacctagaaaagccgttgacatctagtcaaccggcgaaaacggcagcccct
cgaggactccagtccccgaggcgaagaagactctctgaagatgcaaagcagcacaaaata
caaccaaaagtcggccccgtctcctctgagaaaccaggaccttcgtctgattctccgtct
gaggactcgccaaggccaacccatctgccggcagaccgcagcaaacaactggaaaacact
tcaaccagtcaggccaaggaagttcattcaagagcccacgacagagtgcccccttctata
ccagataaggaagctacagaaatatcagagaaagcaaagactctcatatcatcaaaaaat
gtaacttcaatgaccccatcagcgatgtccctgagcagactcctgaatgacccgtcagac
gtacagaggatgttaaaggctcggaggctgagagagctgctgaggcaggagcgctgcaaa
gaaacgaatctcaaaagagctaaagcacgtcgaaaggagtacattttagacccaacaaaa
atgaccatgagagacctcatccattacctccctgagtccaatcccatgagacccagtttg
gaagaacaccatgaggagaacgagacgatgatcccaccttcaccaagaagagaagaacca
acggagcgacctccggtacctgaggtcacccctgccaaagtgaataccagagaagaagag
gaggaggaggaggaagaagacgctgcggcagaggaagaccaggaagaatctctcatggtt
cctcagctcaaagtagcagaagacggctcgctgatcattgatgaagagagcttaacggtg
gaagtccagcgagccaaagggccgaacccagcgtccgacagagaccccatctttgagaga
ggctccacgacaacttatgcaagcttcaggaagtcaaattactccaaaccctggtcgatt
gaagaaactgacatgttctacctggcagtcagcatggtggggacagacttctccatgatt
tgccaactgtttccacacagagctcgatcagaaataaaaaacaagttcaaaaaagaagag
cgacaaaactcctggaggatcgacaaagcttttagagagaggcgaaaactggatatagaa
tacttttctaagctgctggagaaaattatggagtttcagagagagaagaagaaactcaag
tcactcgttgggaagaacaacaaaaggaaagccagaacgaggccaaagggcaagaaatcg
gcaaagagtctgagtgacatggaggaagaggaggaggaggagaaggaggaggacgacgaa
attcccgacttggagaaagagaacgaggaccagtgtaacgaaggggaaactcctgcttct
gagccgaagaaaaaacgcaaaaggaaaaacggggaggcctcgcctgaggaaacgaatgag
aagaaaaacaaaacaggtgacgtaccagaagactcggagccagcacttcctgagagccac
accgattcagaaatgactccaaacgtaaacacaacgaaggatccggttatcaatccagcc
aagctctcacgagccagagcaccaaaaccactcctgcctttgggcctgacgcgaggcaaa
aaggggaaaagtgaagaaacccagtcagataaaggggataagaatgcgagtgaagaagaa
caggtgaataaaaatgaatcaaatgcacgcaaaaccagtagggaaaagttttctggagat
gacatttcttctgaagaggaagaggaaacagtaaagcatcaaggacccactagatatgga
agaatccccaaacccaatctggcctttgcttatcctagcaaagatgaattacattcctct
gaagctgaaacttcttcagcctcaaagtccaaacccaaaggtgctctgaaaagaggcaaa
tcactgaagccgcaatcagaccaaaaacccaagaaatccaaactggttactctcagatcc
tccaggccagacttcagcgacgacgaagacgacgaagatgcaggttgcagctccggtaaa
ggcatcatgtcttctggcctgcactcgctgaatgcggtgatttcagaagtggatgaccct
atggccgagcttgatatcttggccagtatgcccgatatgctgggcatctcccaagatgca
ctgtgtcctgattcatcttgccatcagacacagtatgagacaagcactgctgaaacatgt
gatcatcagttggacctgctggttgatgttatcgacattattacctcagaacaaacagaa
ttatctcaggatgacagctataatgaggccgctcaaaccctcttgaccatcggcaaggtt
agtcacgtctctatgtcaacacagggagaagtgactacacaagcctccacatcaggaatg
gcaacggatggggaaaaatcagaccacttggatgaacagattgtggctgatgcacaaccg
caaagtgctttgtctgctgcatgttctcagacaggtggagaaatttcagaaactgttgcc
agtgtggacccaggaaacctagaaatgaggcacagcgacacatctcatgttaaaaccatt
gagccaacatgtgacgagctaaagactgcacagagctcaaatggcaattctccgtcgacc
aaggtggcgcgcttttctaaagtgaagcctaagccaaaccttgggcaatcttcaaggacc
gcacctccaacaatccaaatggagatttccaaaaaaaaggaggctgaagagaggcactcg
gttggtgctgttgaagcatccccaaagagagcagactctgatgaagcattgttagaagat
ggtgattctcctaaggatgttcagctaacagaagagaaatctgggagttcctcgatcaca
caaggttgctccatgtctttatcccaggttgaatgtagcgggaatgaggttcccagaggt
acaaactcacccaatcgtaaagatgtaagtgttgcacctcatgacagaactgtcgagtct
gatttaagcagctctttggaatctaagtcagaacttacgcatattgtaccagagccatgc
acgccttcagactcaatccaagacagcagcagcaaacatcttcctgctgaaaaagattta
cctgccaatcaaaagagtatggatgtgtctgcacctagaaggagtaggttgtcaaaaatc
aaacccaaccttccgcagatgtcaagaactgcaatgaataaatctcagatcagtaaagag
actgtaaagacagacccacttactacgtcaaactcagaatcccaaaagcaaaccatactg
gatgtgaaaacccagtctaccagtttcttgtcaggaaatgttgacgtgtcccctcaagca
gaacgtcagaatactcttaaggttctttctagtccagaaacacaagctgaatataaatca
aatgtagaattagttgcggccccagaacatagttgtagtcctgctacttcaatctctcct
atagaaaacaaaccagctaataaacaagagagtagtgttacatctgctcagttgagaagg
agccatttgcagaaggttaaacccaaaccaaatctaactcagacttcaagaggtaagata
actaaacctcaagccacagaagacacagcaatgaaaagttctatagaatcgacacagatt
cacttggaagacactgactgtgcttcaaggttgaacccaatactggcttcggactccgtt
catgaatcgacagcaaagcaggttacaaacaaacctgcacctactgaggttgttattcat
gttgacatggaacatcgtccagttgaccaaggtcaaaagcaaaccagcatcaaatcatgt
tcgactttcaagtccacagataaagcttcggattctctcgatgaaacgagtgaaattagt
tgcagtagtgcgatgacatcacatgttagccgaacaaactttgattctgaccaagaccga
cgcggtcaacctgctgtgtctgtaagacctgaggaagagtcagccgtctgcaaacctgac
ggggaaaatgcaacttctgaacagctgaggaaaaatcgaatatcaaaaatcagacttgga
cctaacatttctcaagcatccagagcttcaaagctgaaacctcgaacatcagaaagccag
tcagagaagcacgcaaatcctgaaccggacccagacccaacatgcagcccgtctttggac
aaacaaagtgaaaatgataatcttgtgatggaattaacagcacctattacctctcaatct
tcagaaatgaaaaagacactttctgaagcaaagaagcaaaactttgacgccaatcctcag
tcaacatccagtgaaaacctcataggtgcaacatcttcaaccttcagcagtaataaccca
acagttaaagaaccacagtttggtcaagggtcaaacctgaattcaggagcagatctagaa
agaagcaacctttcagcttgctttgcaccctctaaagagttacaagtcaatcagaaggag
gataaagtgccatctgctcagctggtcaaaaggagtcgatcacaaaagcctaaaccaaat
ttatcacagacctcaagacctgtaaggtccaaagctgatgacaaatctgaagtccaaccc
caactcggtgcacagcagacaatcgcaaaaaaagagaagtattctgagttcacagatgca
aacctgacagctcaaggtggaccaagtgagagcatgaatgtttcacaaacagttaaatca
gcaataaccagcaattcaaagattggcagttcagcccaagatcagacagaaccttgtgct
gcatccgccagtgatcaaacgggtgacaaatcaaacacaggaaactcaacaactacgcag
gctgtaagaagacctcaaagcccagcctctgagcaaaatagagaaactgaggaaaaagta
ctaacaaatgttgaagtttcaagttcagccgttacagaaaaaacgcctcaacgaaggcag
cgcttttccaaagtcaaacccaaacccaatttagaaaaaacctgtagagttgcagtcaga
agtcttcagttagatgatcacagtagacctcttgaagaccagagtaaagggatgtcgtct
gttgcattggagcaaccgctggaatcaactaaggacaaaatgtcagataaagacccaaca
aactctgactgtcttccatctggagattgcaacttggctattaaaccgaaacccaacctg
cactgcagcggacgtcttcggcaaacccagccagctgaaaacacaaaaccaacggaaaca
gactccgacagtacttcgcaagcttttggtgcctctagggaaatcaagaaatctgtacgt
gaacttaaagcggacacccatgatccagaaaaaggagtcattgagaaatcaagtgaaaaa
gactcaagttcaattgattctcgttcttctcatagtcgtgttaaaccacaatcttcttat
gggcatgaaacatcaagagccgaggcgattcagagagatccgctcctgtctcagatactg
ccagagcaagtgccttcagatccagatgagccctttttcatcctctccctgacggagatc
ccggtcccctcagcaggggaagtgggagcgagtggagcccagaacctctcttattgtccc
gcagcaggtgcatcgggacagcagccgagtgtttctgaggtgagtttgaaagcagaagaa
aaccatccagaagtttctgttgaacctaaagtcttcaagaactccatcgctgggccgaat
gaaaaagccggtgatgatttaggcgacaaggaaactcttctcagcaggaaagccaaagtt
tccgaggcgagcgttgctgaaacgaggagttccaagtgtaggaaagcagcaagtaagaga
aatcagaaggaaactccaaccaaagcagaacagacatcttcaaaacctacagcctccgca
tcaaattctaatattcccagtcaaacagaagcagcagcagattgtgcgcatattggcctg
aggtctacggctttaacttccccggaaagggagagcggctttgttgacaacgagcctacg
agcgtgtcgcagtacttcctaagcgacatcttcacagaagttgatgagggataa
DBGET
integrated database retrieval system
