Xiphophorus hellerii (green swordtail): 116724392
Help
Entry
116724392 CDS
T07363
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM33-like
KO
K08883
tripartite motif-containing protein 33 [EC:
2.3.2.27
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
xhe01001
]
116724392
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xhe04121
]
116724392
Enzymes [BR:
xhe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116724392
Protein kinases [BR:
xhe01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
116724392
Ubiquitin system [BR:
xhe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
116724392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
zf-B_box
ANCHR-like_BBOX
PHD
zf-RING_UBOX
PHD-1st_NSD
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
116724392
NCBI-ProteinID:
XP_032425950
LinkDB
All DBs
Position
1:complement(7319162..7352554)
Genome browser
AA seq
1198 aa
AA seq
DB search
MRAPGSRTYAGRAAVVRGRKMADNKGEEEMEPSANADPVPSGQAETQSSTESEDKVIATE
ADSKGEAETESPKDANEELNTSSEGVDDSIDGATEATATPAAAAVVAAGEAGGNASNAAS
PTETSNGNSEPSAVDAVPAADAPVSGNTSETSPAPTAPAAAATPVSTPINLLDTCAVCKQ
SLQTRDCEPKLLPCLHSFCLKCIPQPDRQISVQVPGPHGQTDTHIVNVMRCSVCHQDYKQ
SDIIDNYFVKDTTEATSTSDEKAAQVCTSCEDNAGTVGFCVECGEWLCKTCVEAHQRVKI
TKDHKIRTKEDADAASDSVTTGQRPVFCPIHRQEPLKLFCETCDTLTCRDCQLLEHKEHR
YQFLEEAFQNHKGIIEANMAKLQEKKNYVHYSVSQLQNRLKELGETHRKVEHEIKIAVFT
LINEINKKGKALLQQLESVNKERSLRLMGQHKDTTQLAQQIHHVLNFCNWAITSGSSTAL
LYSKRPIMYQLRQLFKARLEPAPQSNGVVRFFCDPTFWAKNVVNLGNLVIEKPPPVPQPP
GVMVGGPAISPGQSHPGKHPGQINLAQLRLQHMQQAAYAQQKHQQHQQQQQQQQQQQQQQ
QIQQQMRIASQMSQQHPRPGGPPLVQQQPPRLISMQQLQRTGAINGGTNPSMYPSSHHMR
LAGPPQGRMPTAQPRHNGQQYAPMMQPQLQRQHSNPGHAGPFPVASLHNASPTSPTSASM
AGAHAHRGPASPIIGPIELIPSVTNPENLPCLPEIPPIQLEDAGSSNLGYLLSRCISASQ
QHHLGSTDMNPSPGLSTLSPGSSGLSNAHTPARPSSTSSTGSRGSSSSAGRAGTGGGSAA
EQLKVKKEPCTEDDYSCSSSVKTERGKDAGRSACMMSSPESSPLGVPPAGPDAYRDVGER
VKTEPMSETSCSGLNGTSSSTNTTTSQTGSALTNGSVVKRSGSHDAAQGGGGKDDDPNED
WCAVCINGGDLLCCDRCPKVFHMKCHVPTIKIFPQGEFLCTFCRSIADPEIEYCDESKRI
KGDQSLSPEDQRRCERLLLYIFCHELSMGFREPVASSVPNYYKIIKQPMDLKKVKKKLQL
RSSQYYKTIQDFVNDMRLIFKNCAKYNEMSRIIQVYDEEKEINTQAGSEMAISGKAVSLY
FEEKLQDIFPDQHFPDSPDPGSSDEKEREDVDTEDSEEDFVQPRRKRLKTDDKLVHIK
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgctcccggttcgagaacttacgcaggacgtgcagcggttgtaagaggaaggaag
atggcggataacaaaggcgaggaggagatggaaccgtcagctaatgcggacccagtgcct
tcagggcaagccgagacgcagtctagcacagaaagcgaagacaaggtaatagctacagaa
gcggattcgaagggagaagcagaaaccgagtcccctaaggacgctaacgaggagctcaat
accagcagtgaaggagtggacgatagcattgacggggcaaccgaggctactgctacgcct
gccgccgccgctgttgttgcggcaggggaagcaggcggtaacgctagcaacgcagctagc
cccaccgagaccagcaacggcaactcggaaccgtcggcagttgacgctgttcctgccgcg
gatgctcctgttagcggaaacacaagtgaaacatctccagctccgactgccccagcggcg
gcggcaacgccggtgtccactcccattaatttactggatacgtgcgctgtgtgtaaacaa
agtctccagactcgagactgcgaacccaaacttctgccctgcctgcactcgttttgcctg
aaatgtatcccgcagccggacagacagataagcgtgcaggtgcctggtccacacggtcaa
acggatacgcatatagtaaatgtcatgcggtgttcggtttgccaccaggactacaagcaa
agtgacatcatcgacaattactttgtcaaagacacaacggaagctaccagcacatctgat
gaaaaagctgcacaggtgtgcacaagttgtgaagacaacgctgggacagtaggcttttgt
gttgagtgtggcgaatggttgtgtaaaacctgcgtggaggcccatcagagagtgaaaatt
accaaagaccacaaaatccgtacaaaggaagatgctgatgctgcgtctgattctgtcacg
acaggacagaggccagttttctgtcccatccacaggcaggaacctctgaaacttttctgc
gagacatgcgacactctaacgtgtcgggactgtcagcttctggagcacaaggagcacagg
taccagtttctggaagaagctttccagaaccataaaggaatcatcgaagccaacatggcc
aaactacaggaaaaaaagaactatgtccattactctgtgtctcaattgcaaaacaggtta
aaagaactgggtgagactcatagaaaagtggaacatgagatcaagattgctgtattcact
cttataaatgaaatcaacaaaaagggcaaagcgttacttcagcagttagagagcgtgaac
aaagagaggagcttgaggctgatgggtcagcataaggacaccacccagctggctcaacag
atccaccatgtgctcaacttctgcaactgggccatcacttcaggcagcagcactgcattg
ctctatagcaagaggccgatcatgtaccagcttcgacagctcttcaaggcgagactggag
ccagccccacagtccaatggagttgtaaggttcttctgtgacccaactttttgggctaaa
aatgttgttaatttaggtaatttggttattgaaaaacctcctccagttccacaacctccc
ggtgtgatggtaggcggaccggccatttcaccaggccaaagtcaccccggcaaacatcca
gggcagatcaacctggctcagctcaggctgcaacacatgcaacaggctgcatacgcacag
caaaaacatcaacagcatcagcagcaacagcagcagcagcagcaacaacaacagcagcag
cagattcagcaacaaatgcgtatagcctcccaaatgtcccagcagcatcccaggccaggc
ggcccgcctttggttcagcagcagcctcccaggctcatcagcatgcagcagctacaaaga
actggagccatcaatggtgggaccaacccttctatgtacccctcctcccatcatatgcgt
ctggctggtccaccacaaggccggatgcccacagctcagcccaggcataacggacagcag
tatgcccctatgatgcagcctcagttacaaagacagcattccaaccccggacacgctggc
ccctttccagtggcgtccctgcataacgccagtcccacgagtccgaccagtgccagcatg
gccggggcccacgcacaccgcggccctgccagccccataattggtcccatcgaactcatc
ccctccgtcactaatcctgagaacctgccctgcctccctgagataccgcccatccagctg
gaagatgctggttccagcaatctcggatacctcctctctcgttgcatctccgccagccaa
caacaccatctgggctccacagacatgaacccctctcccggactgtcgaccctttctcct
ggatcgtcaggtctgtccaacgctcacacaccggcgcgaccttccagtacgtcaagtaca
ggcagcagaggcagttctagctctgctggcagagcggggacaggtggtgggtcggctgca
gagcagctgaaggtgaagaaagaaccctgcactgaggatgactacagctgctcctcttct
gtgaagactgagcgaggcaaagatgctgggaggagcgcctgcatgatgagcagtccagag
agcagcccactgggggttccacccgcagggccagacgcttacagggacgttggcgagcgc
gtcaaaacggagcccatgtctgagacgtcttgctctggactgaacggcacgtcgtcttcc
accaacactacgacaagccagacaggctctgcactcaccaatggaagcgtagtcaaaaga
agtgggtcgcatgatgcagcgcagggcggtggcgggaaagatgacgaccccaatgaagac
tggtgtgctgtttgtatcaacggcggtgaccttctatgctgtgaccgctgtcctaaagta
ttccacatgaaatgtcacgtgcccaccataaaaatcttcccacaaggtgaatttctctgc
acattctgccggagtatagctgacccagagatcgagtattgtgatgaaagtaagaggatc
aaaggagatcagagcctgagtcctgaagaccagcggagatgtgaacgcctgcttctgtat
attttctgtcatgagctcagcatgggctttagggaacctgttgcaagctctgtgcccaac
tactacaagataattaagcagcccatggacctaaagaaggtgaagaagaagctgcagctg
cgaagctcccagtattacaagaccatacaggactttgtgaatgacatgcgccttatcttc
aaaaattgtgcaaaatacaacgagatgtctcgaataatccaagtttatgatgaggagaaa
gagattaatacccaggcgggatcagagatggcgatatctggtaaggcggtgagcctgtac
tttgaggagaagctgcaggacatattcccggatcaacacttccccgactcgccggacccc
gggtcctccgacgagaaggagagggaggacgtggacacggaggactccgaggaggacttc
gttcagcctcgacgcaaacggttgaaaacggacgacaagcttgttcacatcaagtaa
DBGET
integrated database retrieval system
