Xiphophorus hellerii (green swordtail): 116724430
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Entry
116724430 CDS
T07363
Name
(RefSeq) voltage-dependent N-type calcium channel subunit alpha-1B-like isoform X1
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04010
MAPK signaling pathway
xhe04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
116724430
04020 Calcium signaling pathway
116724430
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xhe04040
]
116724430
Ion channels [BR:
xhe04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
116724430
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
EGF_Hmr-1
Motif
Other DBs
NCBI-GeneID:
116724430
NCBI-ProteinID:
XP_032426004
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All DBs
Position
8:4925708..5061278
Genome browser
AA seq
2311 aa
AA seq
DB search
MARFADDLPTRYGGSAGGGGRGAPGAGRGGARGGGGGGQRMYKQSMAQRARTMAIYNPNP
VKQNCLTVNRSLFIFREDNLIRKYAKRITEWPPFEYMILATIIANCIVLALEQHLPANDK
TPMSERLDDTEPYFIGIFCFEAAIKIIALGFAFHKGSYLRNGWNVMDFVVVLTGILATVG
SDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAIVMFAIIGVE
FYMGKFHQSCFKPGDPVAERVVDWPCGSESPARTCPNGTVCQEYWTGPNFGITNFDNILF
AVLTVFQCITMEGWVDILYSTNDAVGNNWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKE
RERVEKRQEFLKLRRQQQIERELTGYLEWICKAEEVLLEEEDEIAEEKAPMDGAWYKRKQ
NLSVLKRGKIKKGKNDLIGAEEGDDPFADMSSVVPPGSPFGRASVKSGGKMDSSSYFRRK
EKRFRFFIRRMVKAQSFYWIVLCLVGLNTLCVAIVHYDQPDWLTRALYTAELVFLGLFLT
EMTLKMYGLGVRNYFHSSFNCFDFGVIVGSIFEVIWDMIKPGASFGISVLRALRLLRIFK
VTKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFEDETPTTNFD
TFPAAILTVFQILTGEDWNAVMYHGIESQGGVRRGMYSSIYFIVLTLFGNYTLLNVFLAI
AVDNLANAQELTKDEEEQEEAANKKLALQKALEVKEVSPMSAANISIAAFVKQNRDALSR
RSSVTSIQSPKEQQRSAKTMSVWEQRTNQLRKHNMKTSTEALFNELDPDELLAASSALHL
HPDMKTHTDRPLVLEDKNGDQPRAGAPEEAAAPGVRDSFHSRRRHHHRDRNGDGGDGQGV
RRHSHHGRSREHNADAAQDRERLRPQTGSPEEERGHRHHRSRRTPKEGNGRLTNGAQDDG
KGRGDNGNGEKKLRSSRIQRDKQAETEDDSLAGSPLQLKRSSLTPSEKQEDADNQKNSTR
ASQAALNSNAVHIPVTITAPPGETTIIPMNNIDCGNFQLSEEKKDLEEEEAANGPRQILP
YSSMFVFGQTNPVRRLCHYVVNLRYFEMCILIVITMSSITLAAEDPVEANADRNIALKYL
DYVFTGVFTFEMVIKMIDLGLLLHPGSYFRDLWNILDFIVVSGALVAFACSSLMGSQQSV
ARGTKGKDINTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYILFMFI
FAVIAVQLFKGKFFYCTDESKGLEKDCRGQFLEYDRKEVTAQPREWKKYEFHYDNVLWAF
LTLFTVSTGEGWPLVLKHSVDATYEDQGPSPGFRMETSIFYVVYFVVFPFFFVNIFVALI
IITFQEQGDKAMSECSLEKNERACIDFAINARPLTRYMPENKQSFQYKMWKFVVSSPFEY
AIMTLIALNTVVLMMKFYDAPVVYESMLKYLNIIFTGLFTLECILKIIAFNPLNYLKEPW
NVFDFVTVIGSITDILFTEINTNKMINLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSF
KALPYVCLLIAMLFFIYAIIGMQVFGNIELNEETSINHHNNFQTFFQALTLLFRSATGEA
WHEIMLACLSNRPCDKLSGSSGKECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYL
TRDASILGPHHLDEFIRVWAEYDPAACGRICYRDMYKLLRLISPPLGLGKKCPNRVAYKR
LVRMNMPIADDNTVHFTSTLMALIRTALEIKLASGVLAQRLCDADMKREIHRVWPNLQQK
TVDLLVTPHKYNELTVGKVYAAHMIFDYYKQNRAKKLQQQNPSGISQSKLGALFRPVLPF
THLHEPAPPIKPALPPEPEPKTQAPPTFTSSTATNVDANMDAILNQRTSIKHSQSGDFSP
VAARLKPRRRLQRGQSEDVHFCSRAQERQADPKPENMSDSEGRPGLESHARAASLPRLNA
EYHRSHPRHAPGTHLAPIVDLSPIKRSASSLTPQQVGLREYDLERVDQSRFYAEPDPDPD
RTHHHHHHHRCHRRRDKDRDRRQKSLDKTSSAPPSGTVGSFEDPTADGLSRERARERDRS
RPHERRHHSSAGEKQRYYSCERYGSREPGQARSAGPSRSTSPGESQDSGLIKQQGSTVTK
PPSGTSAQARGRRQLPQTPLTPRPAVAYKTPTSSAATPSASTPGSRFVRGASEHDRLLAA
HEEPKAPVGPDSNPSRQQLDSSLLEEGEDFQDAVSSHGGGHSSRSATAPPTAAAQGRAAG
VPNGYHFTLGSAPGSSRGAAGLREREEEDWC
NT seq
6936 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcttcgcagacgatctacccacccgctatggagggagcgcgggcggcggaggg
agaggcgccccgggcgccgggagagggggcgcccggggcggcggtggcggcgggcagagg
atgtacaagcagtccatggcccagagagccagaaccatggccatttacaacccgaacccc
gtcaaacagaactgcctcacggtcaaccgctccctgttcatcttccgtgaggacaacctc
atcaggaagtacgcaaagcgaataacagagtggcctccgtttgaatacatgatcctggca
acgattatcgccaactgcatcgtcttggcactggagcaacatctacccgctaacgacaag
actccgatgtcggaacgcctggacgacacggagccgtactttattggaatattctgtttc
gaggcggccattaagatcatcgccctgggcttcgcgtttcacaaaggctcgtacctccgc
aacggctggaatgtaatggacttcgtggtcgtcctcacagggatcctcgccaccgtcggt
tcagacttcgacctgcgaacgctccgcgctgtcagagtgctgaggcccctcaaactggtg
tccgggattcccagcctccaggttgtgctgaagtccatcatgaaggccatggttccgctg
ctgcagatcggcctgctgctgttcttcgccatcgtcatgttcgccatcatcggggtcgag
ttctacatgggcaagttccaccagtcctgcttcaagcctggagatcctgtagctgagaga
gtggtggactggccgtgcgggtcggagtcgccggccagaacctgtcccaacggcaccgtg
tgccaggagtactggaccgggcccaacttcggcatcaccaacttcgacaacatcctgttc
gccgtgctgaccgtgttccagtgcatcaccatggagggctgggtggacatcctgtacagc
actaatgatgcagtgggaaacaactggaactggctctacttcatccctctcatcattatt
ggctcctttttcatgctcaacttggtgcttggcgtcctgtcaggagaatttgccaaggag
agagaacgagtggagaagcgtcaggagttcctgaagcttcggcgacagcagcagatcgag
cgggagctcaccggctacctggagtggatctgcaaggcggaggaggtgttgcttgaagaa
gaagatgagattgcagaggagaaggccccgatggacggcgcctggtacaagaggaaacaa
aacctttcagttctgaagcgagggaaaatcaagaagggtaaaaacgatctgattggtgca
gaggagggagacgatccctttgctgacatgtcctctgttgttccccccggctccccgttc
ggtcgggccagtgtaaaaagtggcgggaagatggacagctcatcttacttccggcgcaaa
gagaaacgcttccggttcttcatccggcggatggtgaaagctcagagtttctactggatc
gttctgtgcctggtgggcctcaacacgctgtgcgtggccatcgtccactacgaccagccg
gactggctgaccagagcgctctacacagcagagctggtgtttctgggtttgttcctgacg
gagatgaccttgaagatgtacggcctcggagtgagaaattacttccactcgtccttcaac
tgctttgattttggggtgattgtgggaagtatttttgaggtcatctgggacatgataaaa
ccaggagcatcgtttgggatcagcgtgctgagggccctgagactcctccggattttcaaa
gtcaccaaatactggaactcgttgaggaatctcgtcgtttcccttctcaactccatgaag
tccatcatcagcctgctcttcctcctcttcctcttcattgtggtcttcgctttgctcggc
atgcagctcttcggtggacagtttaactttgaagatgagacaccaacaacaaactttgat
accttcccagcagccatcctcactgtgttccagatcctgaccggcgaggactggaacgcc
gtcatgtaccatggcatcgagtctcagggcggcgttcggcgtgggatgtactcctccatc
tacttcatcgtcctcacgctctttggaaactacactttgctaaacgtcttcttggccatc
gctgttgataacctcgccaacgcccaagagctgacaaaggatgaagaggagcaggaggaa
gcagccaataagaagctcgctctgcagaaagctctggaagtaaaagaagtcagcccgatg
tcagccgccaacatttccatcgctgcttttgtaaagcaaaatcgagatgcactctctcgc
aggtcgtccgtcaccagcattcagtcacccaaggagcagcagcgttctgcaaagaccatg
tcggtgtgggagcagcggaccaaccagctgaggaagcacaacatgaagaccagcaccgag
gcgctgttcaacgagctggacccggacgagctcctcgccgcctccagcgccctccacctg
caccccgacatgaagacgcacaccgaccggccgcttgtcctggaggacaagaacggcgac
cagccccgagccggcgcgccggaggaggcggcggcgcccggcgtcagggacagcttccac
tccaggaggcgccaccaccaccgcgaccggaacggggacggaggcgacggccagggggtc
cggcgccacagccaccacggccgcagcagggagcacaacgccgacgctgcccaggacaga
gagaggctccgcccccaaaccgggtcaccggaggaggagagaggccatcgtcatcaccgc
tcccgccgcacgccgaaggaaggaaacgggcgactgacaaacggagcgcaagacgacggg
aaagggagaggagacaacggcaacggggagaagaagctgcgctcctcacgcatccagagg
gacaaacaggcagaaacggaggacgacagccttgctgggagtccgttgcagctgaagcga
agcagcttgacgccgagtgaaaaacaggaagatgccgacaaccagaagaactcgaccaga
gccagccaggccgccctgaacagcaacgccgtccacatccccgtcaccatcaccgcgccg
cccggagaaaccaccatcattcccatgaacaacatcgattgtggcaacttccagctcagt
gaggagaagaaagatctggaagaggaggaggccgctaacgggccgcggcagattcttccc
tacagctccatgttcgtcttcggacaaacaaacccggtgcggcgcctgtgtcactacgtg
gtcaacctgcgctactttgagatgtgcatcctgattgtcatcaccatgagcagcatcacg
ctggccgccgaggacccggtggaggccaacgctgaccgcaacatcgctctgaaatacctg
gactacgtctttactggagtcttcacgtttgagatggtgataaagatgatcgacctgggc
ctgctcctccaccccggctcgtatttccgtgacctttggaacatcctggacttcatcgtg
gtcagcggcgctctggtggcctttgcctgctcgagcctcatgggatcacaacaaagtgtg
gccagaggaacgaagggaaaagacatcaacaccatcaaatccctgcgagtgctgcgagtt
ctgcgacctctgaagaccatcaagcggctgccgaagctgaaggctgtgttcgactgcgtt
gtgaactctctgaagaacgtcctgaacatcctcatcgtctacatcctctttatgttcatc
ttcgccgttatcgccgttcagctcttcaaaggcaaattcttctactgcactgacgagtcc
aaaggtctggagaaagactgcagaggtcagtttctggagtacgatcgtaaggaagtgacg
gctcagcccagagagtggaagaagtatgagtttcactatgataatgttctctgggctttc
ctgacgctgttcactgtctccactggagagggctggccactggtcctgaagcattctgtg
gacgccacgtacgaagaccagggccccagcccgggtttccgcatggagacgtccatcttc
tatgtggtctacttcgtggtgtttccgttcttcttcgtcaacatttttgtagctttgatc
atcatcaccttccaggagcagggagataaggcgatgtcggagtgcagcttggagaagaac
gagagggcctgtatcgacttcgccatcaacgccaggccgcttacacgatacatgccagag
aacaagcagtccttccagtacaagatgtggaagttcgtggtgtcgtcacctttcgagtac
gccatcatgactttaatcgccctcaacaccgtcgtcctgatgatgaagttctacgatgct
ccagtggtgtacgagtctatgctgaaatacctcaacatcatcttcactggcctcttcaca
ctagagtgcatcctcaagattattgctttcaatccactgaactacctgaaggaaccctgg
aatgtgtttgactttgtgacggtgattgggagcatcacagacattttgttcacagagata
aatacgaacaagatgataaacctgagtttcctgaggctgttcagagctgctcgcctcatc
aagctgctgcgccagggctacaccatccgcatcctgctttggaccttcgttcagtccttc
aaggctctgccgtatgtctgcctgctgatcgccatgttgttcttcatctacgccatcatt
gggatgcaggtgtttgggaacatcgagttgaacgaagagacttccataaatcaccacaac
aacttccagaccttcttccaggccctgaccctcctgttcaggagtgcaacaggcgaggcg
tggcatgagatcatgctggcctgcctcagtaaccggccgtgtgataaactctcgggaagt
tcagggaaggagtgcggcagcgatttcgcctacttctacttcgtgtccttcatcttcctc
tgctccttcctgatgttgaatctgttcgttgccgtcatcatggacaactttgagtatcta
actcgggacgcctccatcctcgggccgcaccacctggacgagttcatccgcgtgtgggca
gagtacgaccccgccgcctgtgggaggatttgctatcgggacatgtacaaattattgcgt
ttaatctcgcctcccctgggcctggggaagaagtgccccaacagggtggcttacaagcgc
ctggtgaggatgaacatgccgatcgccgacgacaacacggtccatttcacctccacgctg
atggctctgatccgcaccgcgctggagatcaagctggcgtccggcgtgctggcgcagcgt
ctgtgcgacgccgacatgaagcgggagatccaccgcgtttggcccaacctgcagcagaag
accgtcgacctgctggtcacgcctcataagtacaacgagctgactgtggggaaggtttat
gctgcccacatgatctttgactactacaaacagaaccgagccaagaagctccagcagcag
aacccgtctgggatctctcagagtaaactgggtgctctgttccgcccagttctgcccttc
actcatctacacgagccggcgccgccgatcaaaccggctctgccaccagaaccggaaccc
aaaacacaagccccgcccactttcaccagcagcaccgccaccaatgtggacgccaacatg
gacgccattctgaaccagaggacttccattaaacattcccagtctggagatttctccccg
gtggctgcgaggctgaagccgcgccggcggctgcagagaggccagtcagaggacgtccac
ttctgcagcagagctcaggagcggcaggccgacccgaagccggagaacatgtccgactca
gagggccggcccggcctggagagccacgccagagccgcatcgctgccacgcctaaacgca
gaataccaccggagccaccctcgccacgcccccgggacccacctggcaccgatcgttgac
ctcagcccaataaaacgctcggcgtcgtcgctgacgccccagcaggtcgggttgagggag
tacgacctggagcgggtcgaccagagccggttctatgccgaaccggacccggacccggac
cggacccaccaccatcaccaccatcaccgctgccaccgccgcagagacaaggacagagac
aggaggcagaagtctctggataaaacgtcctcggcgccgccgtccggcacagtcggttcg
tttgaagacccgacagccgacggtttgtccagagagcgagcgagggagcgggaccgcagc
cgcccccatgagaggaggcaccactcctccgccggggagaagcagcgctactactcctgc
gagcgctacggcagcagggagccgggtcaggcccggtcggccggtccgagccggtccacg
tctccgggagagagccaggactctggcctcatcaaacagcagggaagcactgtgacaaag
ccgccatctggtaccagcgctcaggcccgtgggcgccgccagctcccccagacgccgctc
acgcctcggcccgctgtggcctacaagacccccacctcctcagctgctacgcccagcgcc
tccacgcccgggtctcgcttcgtccgcggcgcatcggagcacgaccgcctgctagcggct
cacgaggagcccaaagccccggttggtccggactctaacccgagccggcagcagctggac
tcgtccctgctggaggagggcgaggacttccaggacgctgtgagcagccatgggggggga
cactcctccagaagcgccactgcgccacccaccgccgccgcgcaggggcgggcagcggga
gtaccgaacggctaccacttcaccctggggtctgcgccgggcagcagcaggggagcggcg
ggtctcagggagcgggaggaggaggactggtgctag
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