Xiphophorus hellerii (green swordtail): 116724719
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Entry
116724719 CDS
T07363
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhe03021
]
116724719 (chd1)
03036 Chromosome and associated proteins [BR:
xhe03036
]
116724719 (chd1)
Transcription machinery [BR:
xhe03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
116724719 (chd1)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
116724719 (chd1)
SLIK complex
116724719 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
116724719
NCBI-ProteinID:
XP_032426305
LinkDB
All DBs
Position
8:29738928..29821624
Genome browser
AA seq
1784 aa
AA seq
DB search
MKTRWEKVYFWELCFTSGSHIPVVAFKMAGRSEDESVSNSNGESSNSDDESGSGSASASG
SGSSSSSSSSSSQSGSSDSGSGSDSGSQSESDTEKSNEKKESPNKPNIDGAEFWKSNPSI
LAVQRSAMLRKQQQQQRQASSNSGSDEDSSSSDESDTSSGSRKRGNSDSSDSGSGSVSGS
DTGSDSSTEDNSNETASDYEPSLKFKSRKLPTKMNSRNGKSITQRKKSQKCSSSEDENNY
AKIACGGPRRQATVNISYKEDEDINTDSDDLVEVLGEDVPMPEEEEFETIERVMDCRLGR
KRATGSSTTVYAVEADGDPNFDFDSNKETGEVQYFIKWKNWAHIHNTWETEETLKLQNVR
GMKKLENFKKKEQEKKKWLKAASPEDREYFNCQEELMDDLHSQYRLVERIIGHSNQKSAA
GYPDYLCKWQGLPYSECSWEDGALIAKKFQKCIDDYMGRNQSKTIPSRDLKLMKQRPRFV
PMKKQPAYIGGDGLELRDYQLDGLNWMAHSWSKGNSCILADEMGLGKTIQTISFLNCLFH
EHQLYGPFLLVVPLSTLTSWQREILLWAPRMNVVVYLGDINSRNMIRTHEWMHVHNKRLK
FNILLTTYEILLKDKSFLGGVNWAFIGVDEAHRLKNDDSLLYKTMIDFKSSHRLLITGTP
LQNSLKELWSLLHFIMPEKFHSWEMFEEEHGKGRDSGYTSLHKELEPFLLRRVKKDVEKS
LPAKVEQILRVEMSAIQKQYYKWILTRNYKALSKGTKGSTSGFLNIMMELKKCCNHCYLI
KPPDDNESLSKVEALQQLVRSSGKLVLLDKLLVRLKERGHRVLIFSQMVRMLDILAEYLR
SRQFLFQRLDGSIKGEIRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSD
WNPQNDLQAQARAHRIGQKRQVNIYRLVTKGSVEEDIIERAKKKMVLDHLVIQRMDTTGK
TVLHTGSAPSSSAPFSKEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETREND
PGPSTVGEELLSQFKVANFSMMEDEDIDIDSERSQRSWDDIIPEEQRRRMEEEERQKELE
EIYMLPRMRNCAKQISFNSDRRQSRNRRYSGSDSDSTSDRKRPKKRGRPRTIPRENIKGF
TDAEIRRFVKSYKKFGGPLERLDAIARDAELVDKSEHDLKRLAETVHNGCVRTLRENPCG
PEKTSGGRRGKVKGPTFRISGVQVNAKLVISHEEELAPLHKSIPADPEERKRYMIPCHSK
AAHFDIEWGKEDDSSLLIGIYEYGYGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQAR
ADYLIKLLSKDLAKREAQKQTGTVNSRKKKPRRKIGKTLKSIKGDDVIKSPSSDLTSDKR
SDDENEIDVEKRMVTGRAPTKHVQEDKLKGKNDYDEHHEHQASSSEERDCEEKEGKKEEA
ESCDIKESKEPVQKLEDDNGEKIEVKTEVRERTKRASNLSVQKAYTADNVPVCEESEELD
QRTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITQCLKEYSNPDQ
IKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQENAQTVEQNTRTINTQGYKHADVER
LKDSSHQDDSSRDSYCSDRHQPSGRYSESSSNKDRHGSEYHKKTSVVDSRKRPYSSFSNG
KDHRDHYKADSRDRQDRYYNDNKHRKLEEFRTSKDHRQEVKELSHSDYRSSYRYHSDWQT
DQRASASGTRSPRDERSPCESHSPFDYSSDHKSTPEQNWSNRKT
NT seq
5355 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaagatgggagaaggtttatttctgggaactttgttttaccagtggttcgcac
atccctgttgtggcgttcaagatggctgggcgcagtgaagatgaaagtgtgagcaatagc
aatggagaatcaagtaattctgatgatgagtctggatcaggctcagcctctgcttcgggt
tccggctccagttccagctcctccagcagtagcagccagtcggggagcagtgactcagga
agcggctcagactctggcagtcagtctgagtctgacactgagaaatccaatgagaaaaaa
gaatcaccaaataagccaaacattgatggagccgagttctggaagtccaaccccagcatt
ctggcagttcaaagatcggctatgctcaggaaacagcagcaacagcagagacaagcctct
tctaacagtgggtcagatgaggactcttcaagtagtgatgaatctgacacctcaagtgga
tccagaaagcgagggaattcagactcctctgactctggatcaggctcagtctctgggagt
gatactgggtcagattcatcgacagaggataacagtaatgaaactgcatcagactatgag
cccagtctcaaatttaaaagcagaaaacttccaaccaagatgaattctcgaaatggaaaa
agtatcactcagagaaagaaatcccaaaagtgttcatcttctgaggatgaaaataactac
gcaaagatagcatgtggagggccaagaagacaggccaccgtcaacataagttataaggaa
gatgaagacataaatacagattctgatgatttggtggaggttttgggtgaagatgttcca
atgcctgaggaggaagagtttgaaacaattgaaagagtaatggactgcaggttaggacga
aaaagagcaacaggaagttcaaccaccgtatatgctgtagaagcagatggggaccccaat
tttgactttgattcaaataaagagactggcgaggttcaatatttcattaagtggaaaaac
tgggctcacatccataacacctgggagactgaggaaacactaaagttgcagaatgtcagg
ggtatgaagaaactggaaaacttcaaaaaaaaggaacaagagaaaaaaaaatggttaaag
gcagcatcaccagaagatagagaatattttaattgtcaggaggaactgatggatgacctg
cattctcagtatcggcttgttgaacgtatcataggacattcaaatcagaagtcagctgct
ggttaccctgactacctctgcaagtggcaaggtttaccatattcagagtgtagctgggaa
gatggtgctctgattgccaaaaagttccagaaatgcattgatgactacatgggcagaaat
cagtcaaagaccattccctctagagatttgaagttgatgaaacagagacccaggtttgta
ccaatgaagaagcagccggcttacattggaggtgatggactggagctcagggactaccag
ctggatggtttaaactggatggcccactcctggagcaaaggcaacagttgtattcttgct
gatgagatgggcttaggaaagaccatccaaacaatctctttcctcaactgcctgtttcat
gagcaccagctgtatggaccatttctactagtggtgcctctttctacacttacatcttgg
caaagggaaatactgttatgggccccacggatgaatgttgtcgtctaccttggagacatc
aacagcaggaatatgatacgaacacatgagtggatgcatgtccacaacaagagattgaaa
tttaacatcctcctcacaacgtacgaaattcttctaaaagacaagtcgtttctaggtggt
gttaactgggccttcattggtgtggatgaggcacacaggctgaaaaacgacgactctctt
ctatacaaaacaatgattgacttcaaatccagtcacaggcttctaatcacaggaacacct
cttcagaattccctaaaagagctctggtcattgctccacttcattatgcctgaaaagttt
cactcctgggagatgtttgaggaggagcatggaaaaggcagagattcgggctacactagt
ctccacaaggagctggaacctttcctgctgcgtcgtgtcaagaaggatgtcgaaaaatct
ctgccagctaaagtggagcagattctccgagtggagatgagtgctatccagaaacagtac
tataaatggattttgaccaggaactacaaagctctgagtaaaggcacaaaaggcagcaca
tctggcttcctgaacatcatgatggaattgaagaaatgttgcaatcactgttaccttatc
aagcctcctgatgacaacgaatctctgagcaaagtggaagctttacagcaactggtccgc
agtagtgggaagcttgtgctattggacaaactgctggttcgtttgaaggagcgaggtcac
agagttctaatcttctcccagatggtacggatgctcgacattctggctgaatatttaagg
agccgacagttcctctttcagagattagatggctccatcaaaggagaaatacggaaacaa
gctttggatcattttaatgccgagggctcagaggatttctgcttcttgttatctacacgt
gcgggtggactgggtatcaatctagcatcagctgacacagtggtgatctttgactcagat
tggaatcctcaaaatgatcttcaagctcaggccagagcccacagaattggacagaaaaga
caggtaaatatctatcggctggtgacaaaaggctcagtggaggaagacatcattgagagg
gcaaaaaagaaaatggttttagaccacctcgtcattcaaagaatggacactacaggaaaa
actgtcttgcatactggatctgcaccctctagctcagcaccttttagcaaagaggagctc
tctgcaattctgaagtttggtgctgaagagctttttaaagagccagaaggtgaagagcaa
gagcctcaggaaatggacattgatgagatcctgaagagagccgagaccagggaaaatgat
cctgggccgtccactgttggagaggaattgctgtctcagttcaaggttgctaacttctca
atgatggaagatgaagatattgatattgattctgagcgaagtcagcggagctgggatgac
atcatacctgaagaacagaggagaagaatggaggaagaggaaagacagaaggagcttgaa
gaaatttacatgttgccacgcatgaggaattgtgctaaacagataagtttcaactctgat
agacggcagagcaggaatagaagatattctggctctgacagtgactccacttccgaccga
aagagaccaaaaaaacggggaagacctcgaaccattccacgggaaaatatcaaaggtttt
acagatgctgagatccgcaggtttgtcaagagttacaaaaaatttggaggaccacttgaa
aggttggatgccattgctcgtgatgctgaacttgtggataaatctgaacatgacttgaaa
cgcttggcagagactgttcataatggatgtgtaagaacactacgtgaaaacccatgtggg
ccagagaagacatcaggaggcagacgaggaaaagtgaaagggccaacatttaggatctct
ggagtccaggttaatgccaagcttgttatctcccacgaagaagaactggctccactccac
aagtccatccctgctgatcctgaggagagaaagaggtacatgattccatgtcactcgaag
gcagcacactttgacattgaatggggaaaggaggatgattcaagtcttctcataggaatt
tatgaatatgggtatggcagctgggaaatgatcaagatggacccggacctaaatctcaca
cacaagcttctaccagatgatcctgacaagaagccacaagccaagcagctccaagccaga
gcagactacctcatcaaattactgagcaaagacctggccaaaagagaagcacagaaacaa
actggaacagttaattcacggaagaagaaaccaagaaggaaaattggcaaaactctaaag
tcaataaagggggatgatgtgatcaagagcccatcttcagatctgacttcagacaagaga
tccgatgatgagaatgaaattgatgtggaaaagaggatggtaaccgggagggctccaacc
aaacatgttcaagaagacaagttaaagggaaagaacgattatgatgagcatcatgagcat
caagcttcttcatcagaggagagagactgtgaagaaaaagaggggaaaaaagaggaggct
gaaagctgtgacattaaagagagtaaggagccagtacagaaactggaggatgacaatgga
gaaaagattgaagtaaaaaccgaggtacgagaaaggacaaagagagcttcaaacttatca
gttcagaaggcatatactgcagataatgtgccagtatgtgaggaatctgaggaattggac
caaagaactttcagcgtgtgtaaagagagaatgcgtccagtaaaagctgccctgaagcag
ttggacagaccagagaaaggactgtcagagcgcgagcagctggagcacaccagacaatgt
ctcataaagattggggaccacatcactcagtgtttgaaggagtattcgaatcctgatcag
atcaagcaatggagaaagaacctgtggatatttgtctctaaattcacagagtttgatgca
agaaaactacacaaactctataagcacgcaatcaagaaaagacaagaaaatgcccaaact
gtggagcagaacactagaactataaacactcaaggctataagcatgcagatgttgaaaga
ctgaaggacagctcccaccaagatgacagcagcagagatagctactgctcagacagacat
cagccttcaggtagatactctgaaagcagcagcaataaagacagacatggctctgagtac
cacaagaagaccagtgtggtagactccagaaaaaggccgtactcttctttcagcaatggg
aaagaccacagagaccactataaggcagacagccgagacagacaggacaggtattataac
gacaacaagcataggaaactggaggaattccgcaccagcaaagaccatcgacaggaggtg
aaggagctttctcattcagactaccgttcttcctaccgctaccattcagactggcaaaca
gatcagagagcgtcagcaagtggaacacgttctcctcgagatgaacgctcaccttgtgag
tctcactcaccatttgactactcatcagaccacaagagtacacctgagcagaactggagc
aaccgtaagacataa
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integrated database retrieval system
