Xiphophorus hellerii (green swordtail): 116724740
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Entry
116724740 CDS
T07363
Symbol
ddx56
Name
(RefSeq) probable ATP-dependent RNA helicase DDX56
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xhe03009
]
116724740 (ddx56)
Enzymes [BR:
xhe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116724740 (ddx56)
Ribosome biogenesis [BR:
xhe03009
]
Eukaryotic type
Pre-60S particles
Helicases
116724740 (ddx56)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
116724740
NCBI-ProteinID:
XP_032426348
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Position
8:26691706..26701107
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AA seq
557 aa
AA seq
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MAAERLQFHEMGLDDRLLKAVADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAY
AIPIIQRILASKQSVREQDVRALILVPTKELGQQVQTMMRQLTSFCSRDVRVADISGKAD
VSTQRPILMEKPDVVVGTPSRVLAHLNAQNLALHSSLEMLVVDEADLVFSFGFESDLKNL
LCHLPKIYQSFLMSATFNEDVQALKQLLLHNPVTLKLQGSQLPDSSQLQQYTIKCEEEDK
FLLIYTLLKLQLVQGKTLLFVAAVDRSYRLKLFLEQFAIPACVLNSELPVQSRCHIISQF
NQGFYDIIIATDEQSLVEPAASSSGKEKKKNSRAKSAKAKDKEYGISRGVDFQNVSNVIN
FDFPTSVDSYIHRVGRTARADNPGTALSFISHTELDALAEVEEALGGDKAEAALKPYEFK
MEEIEGFRYRCRDAMRAVTKQAVKEARLKEIKQELLNSEKLKMYFEDNPRDLQLLRHDKD
LHPAVIKPHMKNIPDYLIPETLRGVVNPLSNRRRRKIKPAAEGVVKSSFKRNVRGRNPLK
SFQYKRTGNKKARGGKS
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgaaagacttcagtttcatgaaatgggattagacgaccgcctcttaaaggcg
gtggcggatctgggttggtctcagcccacccttatccaagagaaggccattcctctggct
ctggaggggaaggaccttctggctcgagcgcggaccggatctggaaagactgcagcctac
gctatacccatcattcagcgcatcctggcctccaaacagagcgtccgtgagcaggacgtg
agagctctcatcctggtgccaaccaaagagctcggtcagcaggttcagaccatgatgaga
cagttgacgtcgttctgttctagagatgtccgggtggcagacatctccggcaaggccgac
gtgtcaacgcagagacccattttaatggagaagcccgatgtggtggtggggacaccgtcc
cgcgttctcgcccacctcaacgcccagaacctggcgctccactcttccctggagatgctg
gttgtagacgaggccgacttggtcttctccttcggcttcgagtctgacctgaagaacctg
ctgtgccatttgccgaagatctatcagtcgttcctcatgtcggctactttcaacgaggat
gttcaggccctaaagcagctgctgctgcacaacccggtgaccttgaagctccagggctct
cagctgcctgacagcagccagctgcagcagtacaccatcaaatgtgaagaggaggacaaa
ttcctgctcatctacacgctgctgaagctgcagctggtccaggggaaaacgctgctgttt
gtggcagcagtggaccgaagctacagactcaaactgtttctggaacagttcgccatccca
gcgtgtgtcctgaactcggagctgcccgtccagtccaggtgccacattatcagccagttt
aaccaggggttctatgacatcatcattgccacagatgagcagagcttggttgaacctgcc
gcgtcttcttcagggaaggagaagaagaaaaatagcagagcgaaatcagcaaaggctaaa
gataaggaatacggcatctccaggggcgtggatttccaaaacgtttccaatgtcatcaac
tttgatttcccaacgtctgttgattcgtacatccatcgagttggaagaacagcgagagcc
gacaacccaggcacggccctgtcgttcatctctcacaccgaactcgatgccctggcagag
gtggaggaggccctcggtggagataaagccgaggcggcgctcaaaccttatgagtttaag
atggaggagatcgaaggcttccggtacaggtgcagggacgccatgcgggccgtgacgaag
caggccgtgaaggaggccagactgaaggagatcaaacaggagctgctcaactcggagaaa
ctcaagatgtattttgaagacaaccccagagatctgcagctgctcagacatgacaaagac
cttcatcctgccgtcatcaagcctcacatgaaaaacattcccgactatctgattcctgag
actctgcgtggcgtagtgaatccactgtcgaacaggaggaggaggaagataaaaccagct
gcagagggagtggtgaaaagcagcttcaagaggaacgtccgggggaggaatccgctgaag
agtttccagtacaaacgaacaggaaacaaaaaagccagaggcggcaaatcatag
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