Xiphophorus hellerii (green swordtail): 116724854
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Entry
116724854 CDS
T07363
Name
(RefSeq) PDZ and LIM domain protein 5-like isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
116724854
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
xhe04990
]
116724854
Domain-containing proteins not elsewhere classified [BR:
xhe04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
116724854
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GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
PDZ_2
Motif
Other DBs
NCBI-GeneID:
116724854
NCBI-ProteinID:
XP_032426506
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Position
8:15364398..15414764
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AA seq
612 aa
AA seq
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MSSSYSVSLAGPAPWGFRLQGGKDFCLPLTISRLTDGGKAVKAGMNIGDIILSINGISSE
GMNHLEAQNKIKACTGNLSLTLQRASTVSKEESHKEEPQEIIKPVPITHPAPSTTYTKPP
SQPTPLYNKTARPFGGGSSGVTASSSPAAPKVASIPSESSAFTPAAPSQPPQPPFALKSS
IPVSDSAVVNSAPKISPGRSAFTSPSASSASSNTSSSPRVTAPPSHPNVPQPSVYNTPIN
LYSNANACEVAVGQRRGLLESQGLSEHVNGKAGVELEKSVSPLSDASKKRLIEDTEDWHP
RTGTSQSRSFRILAQMTGTENEQLPENGKKEAVDPTAPSVHTSPAAKTYSNSAAAPRNGN
VVPGSTFKTPAQNKASFQPGGSPGFSKVGTGPSFGKIVGPAQKELDRPTPQPHPEDLNSL
VQRAEHIPAGTRTPMCCKCNKVIRGPFLVAMGMSWHPEEFNCAHCHSSLAERGFVEEKNQ
VYCVHCYEQFFAPTCASCNQKILGEVMNALKQTWHVSCFVCAACHQPIRGNTFHMEDGQP
YCERDYYTMFGTNCHGCDFPIEAGDKFLEALGFTWHDTCFVCGVCSTSLEGQPFFSKKDK
PLCKKHAHSVNI
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcagctacagtgtctccctggccggccctgccccgtggggctttagactgcaa
ggagggaaggacttctgcctgcccctcaccatctcacggctgactgatgggggcaaggca
gttaaagccgggatgaacattggagatatcatcctttctattaatgggatttcctcagaa
ggcatgaatcacctggaggctcagaacaagattaaagcctgcacaggcaacctcagcctc
actctacaaagagcctccactgtctcgaaagaggaatcgcacaaggaagagcctcaggaa
atcattaagcctgtgccgatcactcaccctgcgccgagcaccacatacaccaagccacca
agccagcccactcctttgtacaacaagacagctcggccatttgggggcggcagcagtggg
gttactgcctcttcctccccggctgctccaaaagttgcctctattccttccgaatcatca
gctttcaccccagccgctccatctcagcctccacagcctcccttcgcattaaagtcaagc
atccccgtttcagattcggccgtagtaaactctgcccccaaaatcagccccggccgttct
gccttcacctccccctctgcctcatccgcttcatctaacacctcatcttcacccagagtg
acggcccccccttcccatcctaatgtcccgcagccctccgtctataacacacctatcaac
ctgtactccaacgccaatgcttgtgaagttgctgttggacaaaggcgaggccttttggag
agccagggtctctcagagcatgtaaatgggaaagctggtgtggagcttgaaaagagcgtg
tcccctctgagtgacgccagcaaaaagcgtcttattgaagacacggaggactggcaccca
cggaccggtacctcccagtctcgctccttccgcatcctcgcacaaatgactggcactgag
aacgaacaactgccagaaaatggaaaaaaagaagcagttgacccaaccgctcccagtgtt
cacacatcacctgctgcaaaaacatattccaattctgcagcagcacccaggaatggcaat
gtagtccctggatctacatttaagactcctgctcaaaataaagcctccttccaacctgga
ggttctccaggcttttctaaagtgggaacaggtccctcatttgggaaaatagtcggtcct
gctcagaaagaactggaccgccccactccacagccacatcctgaggatctgaactctttg
gtgcaacgtgctgagcatatacctgctggtacccgtaccccaatgtgctgcaagtgcaac
aaagtcattagaggcccattcctcgtggccatgggcatgtcctggcaccctgaggaattc
aactgcgctcactgccactcctccctggcagaacggggatttgttgaagagaagaaccag
gtgtactgtgtgcattgctacgagcagttctttgctcccacctgtgccagctgcaaccag
aagatcctcggggaagtcatgaatgccctgaagcagacctggcatgtgtcctgttttgtc
tgcgctgcctgccaccagccaatcagaggcaacacatttcacatggaggacggacagcca
tactgtgaaagagactactacaccatgtttgggaccaactgccacggctgcgacttcccc
attgaggccggagacaagttcctggaggcgctgggttttacctggcatgacacctgcttt
gtgtgtggggtttgctctaccagcctggaaggccaacctttcttctccaagaaggacaag
cctttgtgcaagaaacatgctcactctgtcaacatctga
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