Xiphophorus hellerii (green swordtail): 116724873
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Entry
116724873 CDS
T07363
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xhe03009
]
116724873 (ddx55)
Enzymes [BR:
xhe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116724873 (ddx55)
Ribosome biogenesis [BR:
xhe03009
]
Eukaryotic type
Pre-60S particles
Helicases
116724873 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
SLFN-g3_helicase
Helicase_C_2
AAA_19
SBF_like
YbjM
Motif
Other DBs
NCBI-GeneID:
116724873
NCBI-ProteinID:
XP_032426537
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Position
8:complement(25707661..25715340)
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AA seq
588 aa
AA seq
DB search
MENITDGTWDTLSVQLNEKILQTLEEMKFTYMTPVQSACIPLFMNNKDVAAEAVTGSGKT
LAFVIPIIELLLKREEKLKKKQVGALVITPTRELALQISEVMGMFIQKFPEFTQILLIGG
SNPAEDVEKFKEHGGNIVIATPGRLEDMFRRKSEGLELASAVRSLDVLVLDEADRLLDMG
FEASLNSILSYLPKQRRTGLFSATQTQEVEKLVRAGLRNPVRITVKEKGQAASATQKTPA
RLSNYYTTCRADNKFNHLVAFLRQHKHEKQLVFFSTCACVEYFGRALESLVKKVTIHCIH
GKMKNKRSSIFSDFRALKSGILVCTDVMARGIDIPDVNWVLQYDPPSSASAFVHRCGRTA
RIGNHGNALVFLLPMEEPYVNFLSINQKCPLQKMSAIKDVVDVLPKVKAMALADRAMFDK
GMRAFVSYVQAYAKHECSLIFRVKDLDFVSLANGFALLRLPKMPELKGKTFPDFVETTVD
TDSIRYKDKNRQKQRQKMLAELKDREKTELPKKNFVKNKAWSKQKCKKERKKKRAAKRKH
DEDSDMDEEYMKELLEDTRLLKKLKKGQISEEDFEQQLTNSKQEAGGP
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atggagaacattacagacgggacatgggacaccttatctgtccaactaaacgagaagatt
ttacaaacacttgaggaaatgaaatttacttacatgacacctgtacagtcggcttgtatt
ccactgttcatgaacaataaagacgtcgctgctgaggcggtcaccggcagcgggaagact
ttggcttttgtcattcctattatagagctgctgctgaaacgcgaggagaaactcaagaag
aagcaggtcggtgctctggtgatcactcccacacgagaactggccctgcagatcagtgaa
gtgatgggaatgtttatccagaagtttccagagttcacgcagattttgctgattggtggc
agcaacccagcagaagacgtggagaagtttaaagagcatggcggcaacattgtgattgcg
acgcccggccgcctggaggacatgttcaggaggaagtcagaggggctggaactggccagc
gcagtccggagcctggatgttctggttctggatgaggctgacaggctgctcgacatgggc
tttgaggccagcctgaacagcatcctgagctacctgcccaaacagagacggacgggcctg
ttctcagccacccagactcaggaggtggagaagctggtgagggccggcctcaggaacccc
gtccgcatcaccgtcaaagagaagggtcaggctgcctcggccacccagaagaccccggcc
cgcctctccaactactacaccacttgcagagcagacaacaagttcaaccacctggtggcg
tttctaaggcaacacaagcatgagaagcagctggtcttcttcagcacctgcgcctgtgtg
gagtacttcggccgagccctggagtcgctggtcaagaaggtcacgatccactgcatccac
ggcaagatgaaaaataagcgcagcagcattttttcagacttcagggccttaaagagcggg
atcttggtgtgcaccgacgtcatggccagaggcatcgacatccccgatgtgaactgggtt
ctgcagtacgatccccccagcagcgccagtgcttttgtgcatcgatgcgggagaacggcg
cgtatcggtaaccatggcaacgcccttgtctttctgttgccaatggaggaaccctatgtc
aacttcttgtccatcaaccagaaatgcccgctgcagaagatgtctgctataaaggacgtg
gtggacgtgctgcccaaggtgaaggccatggccctggctgaccgcgccatgttcgataaa
ggcatgagggcctttgtgtcgtacgtccaggcttacgccaaacacgaatgcagcctcatc
ttcagagtaaaagatctggatttcgtgtccctggccaacggcttcgcgctgctccgcctg
ccgaagatgcccgagctgaaggggaaaacgtttcccgacttcgtggagacgacggtggac
acggacagcatccgctacaaggacaaaaacagacagaagcagaggcagaagatgctggcc
gagctgaaggacagagagaagacggagctgcccaagaagaacttcgtcaagaacaaggcc
tggtccaagcagaagtgcaagaaggagcgcaagaaaaaacgcgccgccaaaaggaaacac
gacgaggactccgacatggacgaagaatacatgaaggagcttttagaagacactcgcctc
cttaagaaactaaaaaaaggccagatcagcgaggaagacttcgagcaacagctcacaaac
tcaaagcaggaagcaggcggaccataa
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