Xiphophorus hellerii (green swordtail): 116725742
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Entry
116725742 CDS
T07363
Symbol
nwd1
Name
(RefSeq) NACHT domain- and WD repeat-containing protein 1 isoform X1
KO
K24734
NACHT domain- and WD repeat-containing protein
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
xhe04990
]
116725742 (nwd1)
Domain-containing proteins not elsewhere classified [BR:
xhe04990
]
Other domain-containing proteins
WD40 repeat (WDR) domain-containing proteins
116725742 (nwd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
NACHT
WDR55
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
NPHP3_N
AAA_16
Beta-prop_EML
NBCH_WD40
DUF4062
Beta-prop_SCAP
Beta-prop_Nup120_160
AAA_22
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
APAF1_C
AAA_26
NPHP3
Y_phosphatase
SLFN-g3_helicase
Viral_helicase1
Motif
Other DBs
NCBI-GeneID:
116725742
NCBI-ProteinID:
XP_032427976
LinkDB
All DBs
Position
9:32212198..32224480
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AA seq
1647 aa
AA seq
DB search
MDGGQSSGARDILRGRCQGAQRTGSNMIRIFISSSFTDMSVERKVLLEKAFPEVRSFCRS
LGLVFEVVDLSWGIRTFPYGDHEVSEIFLQEIQTSQKVSAGPAFVGLLGNKYGHRPLPRL
IPEKQFEVLLSKLSKNPEAVQQLQEWFRKDNNSVPPTYVLQPITARFPHYNDLRPEVAKL
HDDDLLSWRVTESQLLQLLRSAAAEAETAGDITAEQKRLFYSSGETCPPAWTCPQACPFG
PRGLTFPASHSVTERALEEGVWKDNCQMSALLFVREIPRQRMKEGAKRLAKFMDLTADGL
LDAEAQELLTGLKSRLYATSKKILNLHCVELNRGSIDPKRKEHAEYLNSICQQFISQMTT
RISEAVKLAGEDRRKVWGSTEEDEEEFDWVVEEARQHTVMAAELSKSLQGRDGLLGKICL
AMWESSPVHHGPLVVHGAAGMGKTILLCKLAQEMQGVLEAKAVLVIRLLAANHPQRPSIN
HVLHSVCLQVCLACGLAPHPLLSVSSHLELQRLFQNLLEEVSQQGNTLLLILDSLEQLAD
QHQAHQLRWLPTDVPPNVHLLVSMETTSEVFASTRLRLGAAGNLFEVERLSRDEGQQIME
SHLQAVQRTLTREQKDVVLQSFHASGSPLHLQLILSAAKHWTSFTPTTQLLLGSSSEEVM
SQLLLKLEEKHGKELVGGALGCIVLARRGLMEAELRDVMSLDDDVISEVYRYSLPPTPSL
IRMPPILWARLKQDLRDQLEVQWTDGVTMLAFSSRLLSEVVKARYLTPERRGRIHRILAE
YFLGRWSGRLKPVALPGLTLLLSDRKVPPQPLWFAPGLANVRKLQELPYHLLHAGLWEEL
RQEVVGSAEWLYCQSRVCGVSSLISDLDQCSQYMDCSETGLVREALALMKPGLDILSGHM
ERSVFYSELLARLSSLASTFRTVIGRLCSQCNDWLQTCPEPVLIPRSTFLQQPGGALQHT
LTAPHGGVLCLAVGAALGLLVTGSAGGVVAVWSLRDKHLQQVLQGPSVAILSVKIIESSA
HCLSLAADGSLRRWSLKSGQQLFCIQEAGPAGSAPSAARLQVSEQLLFVHTWMQVKVWKS
DGTEIHSEDDSLVLGVLGDVVVSLHDLDRVRIFDPVTGSQTMVRLTRSLTPVISVSSPKR
GSIFVVSEDGILHQISRTGQLTVAEFPRLPSLFSASEDEKILIAGWERTLSLFRVCGDSV
DGFLELQHDDEVLSACVSPDSRRVVTGAADQLIRIWSVTTGRLLDALSGCSAPVTSLLLY
DHLVVSASSAADSVQLWSLTYDPSHKPLPHIPAGSAHSAVTRDGDQVFYVRHQNQREVLS
WNNRTGSVSERLPVSAEVSCLELAQQKRLLLCGLRSGTVLIYPLAWPQETLCIPPPEGLA
PVLCLALSSQESLLAVAHRDALRLFQVATRDGFPAVEGPLATAPLSPGAPPSHMALLPDR
RLLYGTAGGEVKLHDFGVGVGADLQPHSSGVTCVTASNWGTHALVGSQDATLRLWALDPV
ALDHTMEYQGLFFQGVLCAAFADSDRFVFTGSQDRTVKVWDVASGKLLCVQFVYSPVVRM
LTFRNGFVGLTLQGRVVQEAFRCPDRVEPDHNPLRNIKARYRVTSREKGGAGRRTCSSDL
QDFNPAQFSLNLVSMLSSRPSSACVLL
NT seq
4944 nt
NT seq
+upstream
nt +downstream
nt
atggacggcggacaaagctccggtgcgcgggacatcctgaggggacgctgccaaggagct
cagaggaccggcagcaacatgatccggatcttcatcagctccagcttcacagacatgagc
gttgagaggaaggttctgctagagaaagcgtttccggaggtccggtcgttctgccgcagt
ctgggtctggtctttgaggtggtggatctgagctgggggatccggaccttcccgtatgga
gaccatgaggtcagtgagatcttcctgcaggagatccagacgagtcagaaggtttctgct
ggaccggccttcgtgggcctgctggggaacaagtacggtcaccgacctcttcctcgtctc
atcccagaaaagcagtttgaggttcttctgtccaagctgtccaagaacccagaagctgtt
cagcagctgcaagagtggtttcggaaggacaacaactctgtgccacccacctacgttctc
cagccaatcactgcacgattcccacactacaatgacctccgacctgaggtggcaaagctc
catgacgatgaccttctgtcctggcgcgtcacggagagtcagctactgcagctgctacgt
tctgcggccgctgaggctgagacggctggagacatcacggccgagcagaagcggctcttc
tactcatcaggtgagacatgtcctccggcatggacatgtccccaagcttgtccttttggt
ccaagaggactaacgtttcctgcttctcattcagtcacagaacgggcgctagaggagggc
gtctggaaggacaactgccaaatgtccgccttgctcttcgtccgggagattcctcggcaa
aggatgaaggaaggagccaaacgtctggccaagttcatggacctcactgcggacgggctg
ctggacgctgaagctcaggagttgctcaccggcctgaagtcacgtctgtatgccacgtcc
aagaagatcctcaacctacactgtgtggagctgaacagaggaagcatcgacccaaaacga
aaggaacacgccgagtacctgaacagcatctgccagcagttcatctcccagatgacgacc
cggatcagcgaggcggtcaaactggcgggagaggacaggaggaaggtctggggaagcaca
gaggaggatgaggaggagtttgactgggtggtcgaagaggcgaggcagcacactgtcatg
gctgccgagttgagcaagagtctccagggcagagatgggcttctggggaagatctgcctc
gccatgtgggagtccagcccggtccaccacggtccgctggtggttcacggcgctgctggg
atggggaaaaccattctgctgtgcaaactggcacaggagatgcagggtgtcctggaggcc
aaggcggtgctggttataaggctgctggccgccaatcatcctcagagaccaagcatcaac
catgtcctccacagcgtctgcctccaggtgtgtctggcgtgtggcctggctccgcatccc
ctgctgtcagtcagctctcacctggagctgcagcggctcttccagaacctgctggaggag
gtttctcagcaggggaacactctgctcctcatcctggactccctggagcagctggcagac
caacatcaggctcaccagttgcgctggctgcccacagacgtgcctccaaatgtccacctg
ctggtctccatggaaaccactagcgaggtgttcgccagcacgcggctgaggctgggcgct
gcaggaaacctctttgaggtggagcgtctgtctcgtgatgaagggcagcagatcatggag
tcccatctgcaggcggttcagcgaactttgacccgggagcagaaggacgtggtgctgcag
agtttccacgcctccggctctcctctccaccttcagctcatcctgtctgctgccaagcac
tggacatccttcacaccaacaacgcagttgctgctgggttccagctcagaggaagtgatg
tcacagctcctcctgaagcttgaggagaaacatgggaaggagctggtgggcggggccttg
ggatgcatcgtgttggcaaggaggggcctgatggaggcggaactgcgtgatgtcatgtca
ttggacgatgatgtcatcagtgaggtatacaggtattccctgcctccgacaccttcgtta
atccggatgccgcccatcctgtgggcgcggctcaagcaggacctgcgggaccagctggag
gtccagtggaccgacggagtcaccatgctggccttcagcagccggcttctctcagaggta
gtcaaagcccgctatctgacgccagagcgacgggggcggatccacaggatcctggcggag
tatttcctgggtcgttggtccggaagactgaagccggtggctcttccgggtctgacgctg
ctgctgtccgaccggaaggtcccgccccagccgctgtggtttgctcctggattggcgaac
gtccggaagctccaggagttgccgtatcacttgctgcatgccggtctgtgggaggagcta
cggcaggaagtagtaggcagcgccgagtggctctactgtcagagccgggtttgtggggtg
tccagcctgatcagcgacctggaccagtgctcccagtacatggactgcagtgaaactgga
ctggtccgtgaggctctggccctgatgaagcccggcctggacatcctgtcaggccacatg
gagcggtctgtgttttactccgagctgctggcccgactctcctccctggcctccaccttc
cgcaccgtgattggtcggctctgcagccagtgcaacgattggctccaaacgtgtccggag
ccggttctgatcccgaggagcaccttcttgcagcagccagggggggcgctgcagcacacg
ctgactgcaccccacggaggcgtgctctgcttggccgtgggcgcggcgctggggctgctg
gtcaccgggtcggccggcggcgtggtggcggtctggagcctccgggacaaacatctccag
caggttctgcagggaccgtcagtggccatcttgtcggtaaagatcattgaaagctccgcc
cactgcctctcattggctgcagatggctccctgaggaggtggagcttaaagagcggccag
cagctgttctgcatccaggaggcggggcctgctggctccgccccttccgcggctcgcctg
caggtgtcggagcagctgctgtttgtccacacctggatgcaggtgaaggtctggaagtcg
gacggaaccgagatccacagcgaggacgactcgttggttttgggggttctgggagatgtt
gtggtttctctgcatgacttggaccgggtcagaatctttgacccggtcactggaagccag
acaatggtgcggctgacccggagcctgactccagtgatttctgtgagctctcctaaacgt
gggtcaatatttgtggtgtcggaagacgggatcctgcatcagatctccaggacaggacag
ctaactgtcgcagagtttcctcggcttccgtctcttttctcagcttcggaggacgagaag
atcctgatagcaggatgggagaggactctgagcctgttccgcgtctgcggcgactctgtg
gacggattcctggagctgcagcacgacgatgaagttttatcggcctgcgtgtcgccggac
agccgacgcgtcgtcactggagcggcggatcagctgatccgaatctggtcggtgaccacc
ggccgcctgctggacgctctgagcggctgcagcgctccggtcacctccctgctgctctac
gaccacttggtggtctcggcctcctcggcggcagattcggtccagctgtggagtttgacc
tacgaccccagccacaagcccctcccccacatcccggcaggctccgcccactcagccgtc
accagagacggagatcaggtgttctacgtgcgccaccagaaccagagggaagtgctgagc
tggaacaaccgcacaggttccgtgtcggagcgcctgccagtgtctgcggaggtcagctgc
ctggagctggcgcagcagaagcgcctcctgctgtgcggcctgcgtagcggcaccgtgctg
atctacccgctggcgtggccccaggagacgctgtgcatcccgcccccggagggcctggcc
ccggtgctctgcctggccctcagctcccaggagagcctgctggccgtcgcccaccgggac
gcgctgcgcctgttccaggtcgccaccagagacggtttccccgccgtggaggggcccctg
gcgacggccccgctctcgccaggggcccctccatcccacatggcgctgctgcccgaccgc
cggctgctgtacgggacggccggcggcgaggtgaagctgcacgacttcggcgtcggcgtc
ggcgccgacctgcagcctcacagctcgggggtcacctgtgtcacggcaagcaactggggg
acgcacgccctggtgggctcccaggacgccacgctgcggctgtgggccctggacccggtg
gccctggaccacaccatggagtaccagggccttttcttccagggcgtcctctgcgccgcc
ttcgccgacagcgaccgcttcgtcttcactggatctcaggaccgaaccgtcaaggtctgg
gacgtcgcttcagggaagctgctgtgcgtccagttcgtctactcgccggtcgtccgcatg
ctgaccttcaggaacggcttcgtgggcctgaccctgcaaggccgagtcgtccaggaggcc
ttcagatgtccggaccgggtcgagccggaccacaaccctctgaggaacatcaaggcccgg
taccgggtcacctccagagagaagggcggggccggccggcggacctgcagctccgacctg
caggacttcaacccggcccagttcagcctgaacctagtgagcatgctcagtagcaggccg
tcctccgcctgcgtcctgctgtag
DBGET
integrated database retrieval system
