Xiphophorus hellerii (green swordtail): 116726146
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Entry
116726146 CDS
T07363
Symbol
pdgfra
Name
(RefSeq) platelet-derived growth factor receptor alpha
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04010
MAPK signaling pathway
xhe04020
Calcium signaling pathway
xhe04144
Endocytosis
xhe04510
Focal adhesion
xhe04540
Gap junction
xhe04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
116726146 (pdgfra)
04020 Calcium signaling pathway
116726146 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
116726146 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
116726146 (pdgfra)
04540 Gap junction
116726146 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
116726146 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
xhe01001
]
116726146 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
xhe04090
]
116726146 (pdgfra)
Enzymes [BR:
xhe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
116726146 (pdgfra)
Protein kinases [BR:
xhe01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
116726146 (pdgfra)
CD molecules [BR:
xhe04090
]
Proteins
116726146 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
ig
Ig_2
VEGFR1-3_N_Ig-like
VEGFR-1-like_Ig-like
V-set
C2-set_2
bpX1
Motif
Other DBs
NCBI-GeneID:
116726146
NCBI-ProteinID:
XP_032428596
LinkDB
All DBs
Position
9:complement(22377843..22403085)
Genome browser
AA seq
1457 aa
AA seq
DB search
MDSVRMYLVCGVAIVLMVSVTPGLSTPTIWPAGDELVLEPHSIINVSCTGQSEVVWEEPP
ADDAVVTSNGFTSALLIYDATVEHTGYYGCRHKDKEGDQNDLVEIYVLVKDPQVVFVPER
AEELLVPYEVDLIIPCRVTAKTHDVELIRVPGGEKLHRYYDYRVGFMGDLSPGQYRCEAT
FKGQTFQSDIYTVMSLGSTEVSDFEVEVKASAETVRVGEPFNVSCIGPSGPAFHQQWIHL
KTQAVNAIQTTESFPDWVIYTLSVPRAAAQDGGRYECSVRHEASGKTRVSSVAVSVFGGN
SFVILDHRGILQMESVGILAETQYTIYINAYPAPKVSWMKDGQALSENYYISSKTSHMEG
NRYQSIVTFRQPMEKDSGNYTITAISGSRTAQFSFILQVAGSTRLNLRPSFPPILLPDED
EIVVPLNEPFTLTCRGGAKLMWETPYDMLEQSQEDNSGLFVTTIAVDEATAMHTGYYVCL
YNDHTAEETKTSSIYVYVSDPDSLFVPNFINHVPVDQNEIEIPCRVSDPSAIVTLVNVDT
NQTVPSDYDSKKGALGIFPTGTYVCKAIINGEEHTSEQYIVHDSIDVLHVELSAKRTALL
VGDTITVNCLAQGPYLLEDNWKYPGKLANRGTKTVRENKNEGQILYTLTIPQASTKDSGI
YSCSITAVASRDTQTKEIAIQVFAGEFLSIKPEFRDHESAELDDVREFIATISSFPDAHV
TWLKDGIPLSDLIAEISTSLRKTSETSYRSILTLIRVREEDSGNYTLRVENGNQSHEISL
NLVVKVPAVIVDLMDIHHGSATGQSAVCITRGQPTPVVEWFICKNIKQCANDSSFWAPLP
TNSTEITMESHFDEESNLESQVMFGHLKSTLAVRCLAKNEIGAVSREIKLVSNGPHPELT
VAAAVLVLLVIIIISLIVLVVIWKQKPRYEIRWRVIESVSPDGHEYIYVDPMQLPYDSRW
EFPRDRLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELK
IMTHLGPHLNIVNLLGACTKSGPIYIITEYCFHGDLVNYLHKNRESFLSPSPEKNKKELD
IFGINTADENSRSYVILSFECKGDYMDMKQADNTQYVPMLEMSTTSKYSDVQGSDYDHPP
SQKDSGESDNLLSDDMSEGLTTTDLLSFTYQVAKGMEFLASKNCVHRDLAARNVLLSQGK
IVKICDFGLARDIMHDNNYVSKGSTFLPVKWMAPESIFDNLYTSLSDVWSYGILLWEIFT
LGGTPYPGMVVDSSFYNKIKSGYRMSKPEHAPQDVYEMMMKCWNTEPEKRPSFMGLSENV
ASLLPCSYKRHYEKVNHDFLKSDHPAVTRVCIETDADYVDIPYKNQGKLKDRESGFDEQR
LSSDSGYIIPLPDLDPISDDDYGKRNRHSSQTSEESAIETGSSSSTYAKREGETLEDITL
LDEMCLDCSDLAEDSFL
NT seq
4374 nt
NT seq
+upstream
nt +downstream
nt
atggacagcgtgaggatgtacctggtctgtggcgttgctattgtgttgatggtttcagtt
acgcctggactgtccacccccaccatttggccagcaggagacgagctggtgctggagccc
cactccatcatcaacgtcagctgtacgggccaatcagaagtggtctgggaagaacctccg
gcggacgacgccgtcgttacttcaaacggtttcacctcagctctcctcatttacgacgcg
acggtcgagcacactggctattacgggtgcaggcataaagacaaggagggcgaccaaaac
gatctggtggaaatctatgtcctagtcaaagatcctcaggtcgtgtttgtcccagagaga
gcagaggagctgctcgttccctatgaggttgatttgatcatcccatgccgagtgacggca
aagacccacgacgtggaactgatccgagtccctggcggagagaagctccacaggtactac
gactacagagtgggcttcatgggcgacctctctcctggccagtacaggtgtgaggccaca
tttaaaggccagactttccaaagtgacatctacaccgtaatgagtttgggatccacggag
gtgagcgactttgaggtggaagtcaaagccagcgcggagacggtgcgagtcggggagccc
tttaacgtctcctgcatcggaccctctggcccagccttccaccagcagtggatccatctg
aaaacacaggctgtaaatgcgattcagacgacggaaagttttcctgactgggtcatctac
actctgagcgtcccgcgagccgccgctcaggacggcggccgctacgaatgctcggtcagg
cacgaggccagtggaaaaaccagggtgagcagcgtggctgtgtctgtgtttgggggaaac
tcctttgtcatcctggaccacagagggattctgcagatggagtctgttggcattctggca
gagacgcagtacaccatctacattaatgcatacccggctccgaaagtgtcatggatgaaa
gacggccaagcgctgtcggagaactactacatttcttccaaaactagccacatggaagga
aatcggtatcagagcatcgttacgttccggcagcctatggagaaagacagcggaaattac
acaatcacagccataagcggctctcgcaccgcccagttctcatttatcctccaagtggca
ggttccactagacttaacctcagaccgtccttcccccctatcctgctaccggacgaggat
gagattgtcgtccctctcaacgagccgttcacgctgacgtgtcgcggaggtgcgaagctg
atgtgggaaacaccgtacgacatgctggagcaatcgcaggaggacaacagtggccttttc
gtcaccaccatcgctgttgacgaagccacagcgatgcacacaggttattacgtttgcctc
tacaatgaccacactgcagaggaaaccaagaccagcagtatttacgtctatgtgtcagat
cccgactctctgttcgtgccaaatttcattaaccatgtgccggttgaccaaaatgagatc
gagattccctgcagggtgtctgatccaagtgctattgtgacactggtgaatgttgacacc
aaccaaaccgtacctagtgattatgacagtaaaaagggcgctttgggaatatttcctact
ggaacttatgtctgcaaggccatcatcaacggagaggagcacaccagtgagcaatacatc
gtccatgattccatagatgtcttgcacgtcgagctgtctgccaaaagaactgccttgctc
gttggagacacaataactgtcaactgcctggctcaaggaccttatttactggaagacaac
tggaaataccctggcaaactggctaatcggggtaccaaaactgtacgggaaaataagaac
gaaggccagatcctgtacaccttgacaatcccacaagcctcaaccaaagacagcggcatc
tactcctgctccattaccgctgtagcgtctagagacacccagacaaaggaaatagctatt
caagtgtttgccggtgagtttttgtccatcaagccggagtttcgggaccacgaatctgct
gagctggatgacgtccgggagttcattgccacaatttcctcctttcctgatgcccatgtt
acttggctcaaggacggcatcccgctcagcgacctgatcgctgagatctccaccagtttg
aggaagaccagtgagaccagctacagaagtattctcaccctgatccgggtcagggaggag
gacagtgggaactacaccctgcgggtggagaacggaaaccagagccatgaaatcagctta
aacctggtggttaaagtgcctgcagtcatcgtggacctcatggacatccaccatggttcc
gccacaggacagtctgcggtgtgcattaccagggggcagcctactcctgttgtggagtgg
ttcatatgcaagaacatcaaacaatgcgccaatgactcgtctttttgggcgcctctaccc
accaactcaacagaaatcacgatggagtcccacttcgatgaggaaagcaacctggagagt
caggtcatgtttggccatctgaaaagcactctggctgtgcgatgccttgccaagaatgaa
ataggagctgtcagcagggagatcaaattggtgtccaatggccctcaccctgagctgacg
gtagctgctgctgtgctggtgctcctggtcattatcatcatctcactcattgtcttggtt
gttatctggaagcagaaaccacggtacgagatccgctggagggtcatagagtctgtgagt
ccagacggtcacgagtacatctatgtggatcccatgcagcttccctacgactccagatgg
gagtttccccgagatagacttgtgcttggccggatcctgggctctggagccttcgggaag
gtggttgagggcactgcctacggactcagccgctctcagcctgttatgaaggtggcagtg
aaaatgctgaaacccacggctcgctccagtgagaagcaggctctgatgtctgagctgaag
atcatgactcacctcggacctcatctcaacatcgtgaacctcctgggagcgtgcaccaag
tcaggccctatctacattatcaccgagtactgcttccacggcgacctggtcaactatctg
cacaagaacagggagagcttcctcagcccgagtccagagaaaaacaagaaggagctggat
atctttgggatcaatactgcggacgagaacagcaggagttacgtgatcctgtccttcgag
tgtaaaggagactacatggacatgaagcaggcggacaacacccagtatgtgcccatgctg
gagatgagcacgacctccaagtactctgacgtccagggatccgactacgaccaccctcct
tcacagaaagactcaggcgaatccgacaacctgctgtcagacgacatgagcgaaggcctc
acgaccaccgacctgctcagcttcacctaccaggtggccaaaggaatggagtttcttgcg
tccaaaaattgcgtgcatcgggaccttgcagccaggaacgtccttctctctcagggcaag
attgttaagatctgtgactttgggctggccagagacatcatgcatgacaacaactacgtc
tccaaaggaagcacctttttgccagtgaagtggatggccccggaaagtatttttgacaac
ctgtacaccagtcttagtgacgtttggtcatatggcatcctcctctgggaaatattcacc
ctaggtggcactccgtacccagggatggtggtggattccagcttctacaacaaaatcaag
agcggatacaggatgtcaaaacctgagcacgctccgcaagatgtgtacgagatgatgatg
aagtgctggaacacagagccggagaagaggccttccttcatgggtctgagtgaaaatgtg
gcgtctttgctgccctgcagctacaagaggcactatgagaaggtgaaccacgattttctg
aagagcgaccatcccgccgttacccgagtctgcatcgagacggacgcggactacgtcgac
attccctacaagaaccagggcaagctaaaggacagggaaagcggcttcgacgagcagcgg
ctgagctccgacagcggctacatcatcccactccctgacctggaccctatatctgatgat
gactacggaaagaggaacagacacagctctcaaacgtctgaggagagcgccattgagact
ggctccagtagctccacctacgccaagcgcgagggcgagaccctggaggacatcacgctg
ttggacgagatgtgtctggactgtagcgacctggccgaggacagctttctgtga
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integrated database retrieval system
