Xiphophorus hellerii (green swordtail): 116726259
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Entry
116726259 CDS
T07363
Name
(RefSeq) retinoic acid receptor RXR-gamma-B-like isoform X1
KO
K08526
retinoid X receptor gamma
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03320
PPAR signaling pathway
xhe04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
116726259
03320 PPAR signaling pathway
116726259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xhe03000
]
116726259
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
xhe03310
]
116726259
Transcription factors [BR:
xhe03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
116726259
Nuclear receptors [BR:
xhe03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
116726259
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Nuc_recep-AF1
Hormone_recep
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
116726259
NCBI-ProteinID:
XP_032428789
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Position
9:complement(16748828..16778319)
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AA seq
482 aa
AA seq
DB search
MDSNDPYLHLSMWHPASLPATGGSPRRERGCGNYSAGPMSAGHGHPPSMAGMVGHPSVIS
TSRPLPSPMSTLGSPMNGLASPYPVITSSLGSPSVPLQSTPNMNFGPISSPQMNSMNNVS
SSEDIKPPPGLQSLGNINYQCTSPGGMSKHICAICGDRSSGKHYGVYSCEGCKGFFKRTV
RKDLTYTCRDNKECLIDKRQRNRCQYCRYQKCLAMGMKREGVGVCAAVQEERQRGKERGE
NEVESTSSFNDDMPVEKILDAELAVEPKTETYSDGSPGNSTNDPVTNICQAADKQLFTLV
EWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRSSAHSA
GVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEALREKVYASL
ESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQ
IT
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggacagcaatgatccatatttacacctcagcatgtggcaccctgcctctttacctgca
accggaggcagccctaggagggaaaggggttgcggtaactactcggcagggccaatgagt
gcaggccacggtcatcccccttccatggctggcatggtgggacatccctcagtcatcagc
acctccaggcccctaccgtcccccatgtccaccctgggctcgccaatgaacggcctggca
tcgccttatcccgtcatcacgtcgtctctgggatcaccctccgtacccctccagtctact
cccaacatgaactttggaccaatcagcagtccacagatgaactcaatgaacaatgttagc
agttcggaggacatcaagcctccaccgggcctgcagtctctgggaaacatcaactaccaa
tgtacgagcccgggggggatgtcaaagcacatctgtgctatctgcggggatcgctcttca
ggaaagcactatggtgtgtacagctgcgaaggctgcaaaggctttttcaagcgcacggtc
cgtaaagatctcacctacacgtgtcgagacaacaaagagtgcctgatagacaagcgccag
cggaaccgctgccagtactgccgctatcagaagtgccttgccatgggcatgaagagagaa
ggtgtgggcgtgtgtgcagccgtgcaggaagagaggcagcgcgggaaggagcgcggcgag
aacgaggtggaatccaccagcagtttcaacgacgacatgccggtggaaaagatcctggat
gctgagctggctgtggagcccaaaacggagacgtacagcgacggcagccccggaaactcg
accaacgaccccgtcactaatatctgtcaggcagcagacaagcagctcttcaccttggtg
gaatgggccaaaaggatcccacacttctctgagctccctctggacgaccaggtcatcctg
cttcgagcaggttggaatgagctgctcattgcctctttctcgcatcgctcagtcacagtt
aaagatggcatcctgttggctacaggtctacacgtgcacagaagtagcgcccacagtgca
ggagtgggatccatcttcgacagagtcctcacagagttggtatccaaaatgaaagacatg
cagatggataagacagagctgggctgcctgcgagccatcgttctatttaacccagatgca
aaaggtttgtcaaacccatcagaggtggaggcgctaagagaaaaagtctacgcttcattg
gagtcgtatacaaaacagaagtaccccgaccagccaggcaggttcgccaaactgctcctg
cgcctgccagctctgcgctccatcggtctcaagtgtttggagcatctgttcttctttaaa
ctaatcggggacacgcccattgacactttcctgatggagatgctggaggctccgcatcag
atcacatga
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