Xiphophorus hellerii (green swordtail): 116726295
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Entry
116726295 CDS
T07363
Symbol
hps3
Name
(RefSeq) Hermansky-Pudlak syndrome 3 protein isoform X1
KO
K20190
Hermansky-Pudlak syndrome 3 protein
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xhe04131
]
116726295 (hps3)
Membrane trafficking [BR:
xhe04131
]
Endosome - Lysosome transport
Others
BLOC-2 complex
116726295 (hps3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HPS3_C
HPS3_N
Motif
Other DBs
NCBI-GeneID:
116726295
NCBI-ProteinID:
XP_032428852
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All DBs
Position
9:185085..206512
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AA seq
1089 aa
AA seq
DB search
MKSAEESFNQTEWKEQQFVFKFTSSNYVGANMVHVYNCHPFTSQQIVQVEQEPGLVCCGG
GALFVVTTGGCKVEVYNLETEGCPLICRFASMGTVRRIRHSSIGDYLVTIEEKNSATYLR
VYTNWRHQAEEKSRVGVRLLGHLLRVASVWGGVQMEIIEIPLSEHPVSLACCAVTGDLLV
GCENTLVLFALRRHTQQNLQNQQNLQSSWSNSEQSCSQSPGRTSSQNQELSVLDFERSVI
LHLSKITPKQVALCGGYVAVQAELEVLVLKLEVTAEPTGVEEHSDSFKSEDYPEEQSDFL
LVPKHQELLGDRARTCDVPVSVEQTGLEDRRRYTLSYLLFRRFTPEFFQGCSVEEIQLHS
LQLHPMSTSKQSASVDEPACMFCFFSLPTAGYLYSLRGGVELLSTYQYPEKALQAVLTDH
LLHVITRNALQSFTVRCAALAARVEDPYIDTTMKACPPCSLEVCALRMQLFIGLRSLCVF
GRHVVLLSTADTEAPEETERHTQRRGLDLKEHNMLTGIFLAVGIDPSTTPALENLLSRPF
LSRRWAISPPKETSPVGHGWNLYVVDTVPPITLHQEMVEYSQRYAETNPQGLSLRHLLSE
AHLFLRSSLLESSEQRQASEGVRKMAAQTYGEELEEAFRQNSAQLGDSFSRGSQKDCHLA
LPYYRMSGLSVTEVMSRNRPLPGSPHSYGPGFLFYLKNYLLEETDQILSQEDADEVTRIF
SQSEPSMLVSACASPCMMNVDPAATLQILQRLEETAGVSVPLTITMATMMLRLGNMAQYT
ELMERHAEMLLVYGFIEEPRLLLHAAGGGGKHPQVRPTALAGQLADSQPGLLVAAMVALH
ENNKVQLEPADHVFKELGCESSLQVDFWEAMLMASSQDAVIQELVFRLASVYIDRLTAGE
SPTKHKSLKSADDLISCCSHYGALYPWLTVLNPAQTSSYQHQEALHKLQSLLCGPSLSIG
NVAPLLESLSEETLWGFSLHLLCATRRGHYGSSIERLLDRCPQAIIAYANHQLQDKHMAL
WWQKLLPELCNRTRAAADNGVLLGALTETLVVVAMETSPAEFLELLPDDGSASFFLPHLL
TCGQKHLPA
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgaagtctgcagaagagtcatttaaccaaacagagtggaaagaacagcagtttgtattt
aaatttacatcttcaaactacgtaggagcaaacatggtgcatgtctacaactgccatcct
ttcacttcacagcagattgtacaggtggaacaggaacctggactggtgtgctgtggaggc
ggagcgctgtttgttgtgacaacaggaggatgcaaggtggaggtgtacaatttggaaacg
gagggctgccctctcatatgccgctttgctagcatgggcacagtgaggaggatccggcac
agctccatcggagactacttggtaaccatagaggaaaaaaacagcgccacctatctgaga
gtttacacaaactggcggcaccaggcggaggagaagtcccgtgttggggtgcgtttattg
ggccacctgcttcgcgtcgcgtctgtctggggtggagtgcagatggagattattgagatc
ccgctgtcggagcatcccgtgtccctggcatgctgcgccgtgactggagacctcctggtg
ggctgcgagaacacgctggttcttttcgctttgaggagacacacccagcagaacctgcag
aaccagcagaacctccagagctcctggtccaactcggagcagagctgcagtcagagtcca
ggtcgaacttctagtcaaaatcaggaactttctgtcttggactttgaacgttcggtcatc
ctgcatctctccaaaattactcctaagcaggtggcgctgtgtggaggttatgtggcagtc
caggccgagcttgaagttctggttctgaaactggaagtaacggccgagcccacaggcgtg
gaagagcattcagattcctttaaaagtgaagattatccagaagagcagagcgacttcctg
ctggttccgaagcaccaggagctgctgggggaccgagccagaacctgcgacgtccctgtc
agcgtggagcagaccggactggaggaccgcaggcgctacacgctctcctaccttctcttc
aggcgttttactccagagttctttcaaggctgcagtgtggaggagattcagctccactcg
ctgcagctccaccccatgtccaccagtaagcagtcggcgtctgtggacgaaccggcctgc
atgttctgcttcttctctcttcccacggcgggatacctctacagcctgaggggcggggtt
gaactcctctccacctatcagtatccagagaaagcgctgcaggcggtgctcacagatcac
ctgttgcacgttataaccaggaatgcgctgcagtcgtttacggtgcgttgtgccgcacta
gcagccagggttgaagacccctacattgacaccaccatgaaggcttgtccaccgtgcagc
ctggaggtgtgtgcgctcagaatgcagttatttattggtctgcggtcactgtgtgtcttt
ggccgccatgttgtcctcctctccactgctgacacagaagcaccagaggaaacagaacgc
cacacacagcgccggggcctcgatttgaaagagcacaacatgctgactggtattttcctt
gctgtgggaatcgatccatcaaccacaccagctctggagaacctcctgtcacgccccttc
ctgagcaggaggtgggccatctcaccccccaaagaaaccagtcctgttggacacgggtgg
aatctgtatgttgtcgacaccgtacctcccatcacgctccatcaggagatggttgagtac
agccagcgctacgcagagactaacccacagggcctgagtcttcgtcacctcctcagtgaa
gcccacctcttcctccgctcctccctgctggagtcgtcagagcagcggcaggccagcgaa
ggcgtcagaaagatggccgcccagacatacggggaggagctggaggaggcgttcagacag
aactccgcccagcttggagacagtttcagcaggggcagtcagaaggattgtcacctggct
ttgccgtactacaggatgtctggtctgtcagtcactgaggtcatgtccagaaaccgtcca
ctcccaggcagtcctcactcctacggacccggtttcctgttttatctgaagaattacctg
ttagaggaaactgaccagatcctcagtcaggaagacgcagatgaggtcactagaattttc
agccaatcagagccctcgatgctggtcagcgcgtgcgccagcccgtgcatgatgaacgtc
gacccggctgcaacgctgcagattttacaacgtctggaggaaacggctggcgtgtcggtg
cctctgacaatcaccatggcgaccatgatgctgcgcctgggcaacatggcgcagtacacg
gagctgatggagcgacacgctgagatgctgctggtgtacgggttcatcgaggagccgagg
ttgctgctacacgcagcaggaggaggagggaaacaccctcaggtgcgtccgacggcgttg
gccggccagctggctgattcccagcctggactcctggtggcggccatggtggctttacac
gagaacaacaaggtgcagctggagccggccgatcacgtctttaaggagctgggatgtgag
agcagcctgcaggtggacttttgggaggcgatgctcatggcgtcctcccaggatgccgtc
attcaggagcttgtgttccgactcgcttcggtttacatcgaccgactgacggccggcgaa
tccccaacaaaacacaagtcgctgaaaagtgcggatgacctgatcagctgctgctctcat
tatggcgccctctacccatggctcaccgtcctgaacccagctcagacttccagctaccaa
caccaggaggcgctgcacaaactgcagtcgttgctctgcggtccgtccctctccatcggc
aacgttgctcctctgttggagagtctgtcggaggaaacgctgtggggcttcagcctgcac
ctcctctgtgccaccagaagggggcactatggcagtagcattgagcggttgttggaccgc
tgtcctcaggccatcatagcctacgccaaccaccagctacaggacaaacacatggctctc
tggtggcagaaactacttcctgagttgtgcaaccggacgagagcggccgctgacaacggc
gtcctgctcggagctctgacagagacgctggtggtggttgccatggagacgagccccgca
gagtttctggagctcctgccagacgacggctcggcgtcgttcttcctgcctcacctgttg
acgtgcggccagaaacacctgccggcctga
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