Xiphophorus hellerii (green swordtail): 116726328
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Entry
116726328 CDS
T07363
Symbol
atg4c
Name
(RefSeq) cysteine protease ATG4C isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04136
Autophagy - other
xhe04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
116726328 (atg4c)
04136 Autophagy - other
116726328 (atg4c)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
xhe01002
]
116726328 (atg4c)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xhe04131
]
116726328 (atg4c)
03029 Mitochondrial biogenesis [BR:
xhe03029
]
116726328 (atg4c)
Peptidases and inhibitors [BR:
xhe01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
116726328 (atg4c)
Membrane trafficking [BR:
xhe04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
116726328 (atg4c)
Mitochondrial biogenesis [BR:
xhe03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
116726328 (atg4c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
Motif
Other DBs
NCBI-GeneID:
116726328
NCBI-ProteinID:
XP_032428892
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All DBs
Position
9:2894438..2908032
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AA seq
494 aa
AA seq
DB search
MANKGSDEVEKLKTKFMSMWHNVKYSWALKSKTPFSRNSPAFLLGKCYHFKAEDDDCPSE
DWHEFSDENLVMGNVEAFRKDFTSRLWLTYREDFPPLPGSTLTSDCGWGCMLRAGQMMMA
QALVLHVLGRDWSWPEALTLQPLDVETRTTTAAKRLVASLQGNPRISESRQSLAPQAQAS
GSAEEADAHLKEMDHRNLVSWFADVSSAPLGLHSLVRLGMMIGKQAGDWYGPAMVAHILK
EAVKEAMEPGLASITVYVSQDCTVYNEDVMDCHKALKAGETSGEAADSPPVAQKSQLSTT
PTLPENQAVVILIPVRLGGERTNPEYFDFAKRLLRLEYCIGIIGGKLKEACYFVGFQGQC
QHNGKWRKIHSRRDDSLIYMDPHYCQSFVNVSTSDFPLQSYHCPSPKKMPFSKMDPSCTI
GFYSRSAQDYERIREEVSKVLEQSMKEKYPPFTFLQGRSADYDLSVGLSTEKREWPFIRE
SRRTVTTAGDFVLL
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atggcgaataaagggagcgacgaggtggaaaaattgaagacaaagttcatgtcaatgtgg
cacaatgtgaagtacagttgggcacttaaatccaagactccattcagtagaaactcccca
gcgtttcttctggggaagtgctatcattttaaggcagaagatgacgactgtccctctgaa
gactggcatgaattctctgatgagaacctcgtcatggggaacgtagaggctttccgaaag
gattttacatctcgtttgtggctaacgtaccgggaagatttccctccgctgccaggcagc
actctgacctcagactgtggctggggctgcatgctgagggccgggcagatgatgatggct
caggctcttgttctgcatgtcttgggcagagactggtcttggccagaggcgctcaccctc
caacccttagatgtagaaacgcggaccaccacagcagctaagcgacttgtcgcttctctg
cagggcaaccccaggatttctgaaagcagacagtctcttgcacctcaagcccaggcgtca
ggatcagcagaggaagcagatgcacatttgaaggagatggaccacagaaatctggtgtcc
tggtttgcggacgtctcctcagctccactgggtctgcacagtctggtccgtttaggaatg
atgattggaaaacaggcaggggactggtatggtccagctatggtagcacacatcttgaag
gaagctgtcaaggaagcgatggagcctggcttggcgagtataactgtctacgtctcccag
gactgcacagtgtacaatgaggatgtcatggactgccacaaggccctgaaagcaggagaa
acctctggtgaggcagcagatagtcctcctgttgcacaaaaaagtcaactgtcaacgacc
cccacactgccagagaaccaagctgtcgtcatcctcatccctgtgaggctcggaggagaa
aggacaaacccagagtattttgactttgcaaaaaggctattgcgtctggagtactgcata
ggcatcattggagggaagctcaaggaggcctgctactttgtgggatttcaaggtcagtgc
cagcataatggaaaatggagaaagatacattcacgcagagatgacagcttgatttacatg
gaccctcattactgtcagtcttttgtgaatgtcagcaccagcgatttccctcttcagtca
taccattgcccctcaccaaagaagatgcctttcagcaagatggatccaagctgcactatt
ggtttctattctagaagtgctcaagattatgagagaatcagggaagaagtgtccaaggtg
ctggagcagtcaatgaaggagaaatatccgccgtttacttttttgcaaggtcgcagcgca
gattatgacctgtcggtgggtctgagcacagagaagcgggaatggccctttattagggaa
tcacgcagaaccgtcaccacagctggagactttgtgcttctctga
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