Xiphophorus hellerii (green swordtail): 116726865
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Entry
116726865 CDS
T07363
Symbol
pms2
Name
(RefSeq) mismatch repair endonuclease PMS2 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03430
Mismatch repair
xhe03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
116726865 (pms2)
03460 Fanconi anemia pathway
116726865 (pms2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116726865 (pms2)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
116726865 (pms2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
116726865
NCBI-ProteinID:
XP_032429674
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Position
10:24183824..24192519
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AA seq
826 aa
AA seq
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MSDVCTSEPAGAIRAIDKHSVHRICSGQVVLSLATAVKELVENSIDAGATNVEVKLKECG
AEQIEVSDNGRGVEEANFEGLALKHHTSKLRDFSDLIHVETFGFRGEALSSLCALSDLSV
ITCHESSQVGTKLVFDHKGHLVQQCPCPRQQGTTVTLQQLFYTLPVRHKEFQRNIKKEFS
KMIHVLQAYCIISTGVRITCSNQTGQGKRSAVLSTGGSQSMRDNIGAIFGPKQLQSLLPF
RQVSPLENIMEEYGLKDGDLPKQLFTISGFVSTGDHGVGRSASDRQFFFINSRPCDPVKV
SKLVNEVYHMYNRHQYPFVALNITVASDCVDVNVTPDKRQIFLHEEKLLLAILKSSLINM
YEAGVNKLSLNYTPTASSASKEVHLPVEDKAEPAENNQPGTLSPTSTLNLAALKAAFSNQ
NSALSGSKSSSEKASKSGPSQKTLQCFFKGSVKSPVRPRTEATKGSLGAQTELHGFRNEG
VSVREKDSERFLAVESPDPQHPDSSEPVVENVTHDSSVSQNLPEDPGVQTEARSPVEDSV
IIPDAKRARRDDPRFTAEQTSDTASSTADVPVCLRRKTVPLHFCLQALAAGIKRLQQQQR
QRAADRQRYRRFRANISPGENQRAEDELRREISKDMFKEMEIIGQFNLGFIITKLNSDIF
MIDQHATDEKYNFEMLQQHTVLHGQRLIVPQKLHLTAVSENVLLENVEIFQKNGFEFLID
EDAQVMERVKLVSLPTSKNWTFGPADIEELIFMLSDSPGVMCRPSRVRQMFASRACRKSV
MIGTALSVGEMKKLVIHMGEIEHPWNCPHGRPTMRHLANLEIISQD
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatgtttgcacttctgagcctgctggagccataagggccattgacaagcactca
gtgcatcggatctgctctggacaagtagttctgagtctggccacggccgtcaaagagctg
gtggagaacagcattgatgcaggagcaaccaacgttgaggtcaagctgaaggagtgtggt
gctgaacaaatagaagtgtccgacaatggcagaggtgtcgaagaggcgaactttgaagga
ctcgcactaaagcatcacacgtcaaagctgagggatttctctgacctgatccacgtggaa
acattcggctttcgaggcgaagccttgagctctttgtgtgctctcagtgacctgagtgtg
attacatgccatgagtccagccaagtaggcaccaagttggtgtttgaccacaaaggtcac
cttgtgcagcagtgcccctgtcccaggcagcagggcaccacagtaacgctgcagcagctc
ttctacacgctgcccgtcagacacaaggagttccagcggaatatcaagaaggagttttcc
aaaatgatccacgtcctgcaggcctactgcatcatctctacaggagtccgtatcacctgc
tccaatcaaacgggccagggaaagcgcagcgccgtcctcagcaccggcggcagccagagt
atgagagacaacattggagccatatttgggccaaaacagctgcagagtcttctcccgttc
cggcaagtttctccgctagagaatattatggaggaatatggacttaaagacggagactta
cccaaacagctttttacgatttcgggctttgtgtccaccggagaccacggcgtggggcgg
agcgcctcagaccggcagttcttcttcatcaacagccgcccatgtgacccagtgaaggtc
agcaaacttgtgaatgaagtgtaccacatgtacaacagacatcagtatccatttgttgcc
ctgaacataactgttgcctcagactgcgtggatgtgaacgtaacgcctgacaaacgacag
atatttcttcatgaggagaagctcttactcgccatcctaaagtcttctctcatcaacatg
tatgaagctggagtaaataagctcagcctgaactatacaccgactgcatcgtctgcatct
aaagaagttcaccttcctgtcgaagacaaagcagaacctgcggagaacaaccaacccgga
accctgagcccaacgtcaaccttgaacctcgctgccctcaaagctgctttctcaaaccag
aacagcgccctctctgggagtaagtcaagctcggaaaaagcttccaaaagcgggccgagc
cagaaaacgctgcagtgtttctttaagggctcagttaaatcaccagtacgacccagaaca
gaggcaactaaaggcagcctgggagcgcagacggagctccatgggttcaggaatgaaggg
gtgtcagtcagggagaaggactctgaacgattcttggcagtggaatcaccagatccacag
cacccagactcctccgaaccagttgttgaaaatgtcacgcacgactcatcggtgagccag
aacctccctgaggacccgggggtccagaccgaagcacgttcacctgtcgaggactccgtc
attatccccgatgctaaaagagccagacgagacgatccacgtttcaccgcagagcaaacg
tccgacacggcttcctccacggccgatgtccccgtctgtctgcggaggaagaccgtgccg
ctgcatttctgtctgcaggccctggcagccggcatcaagaggctgcagcagcagcagaga
cagcgagctgcagacaggcagcgctacaggcgcttcagggccaacatcagccctggagaa
aaccagagagcagaggacgagctccgcagagagatcagtaaggacatgtttaaggaaatg
gagatcatcggtcagtttaacctgggcttcatcatcaccaagctgaactccgacatcttt
atgattgaccaacacgccaccgatgagaaatacaattttgagatgctgcagcagcacact
gtgctccacggacagaggctcattgtcccacagaaactccacctgactgcagtcagtgag
aacgtgctcttggagaacgtcgagatcttccagaagaacggctttgagttcctgattgat
gaagacgcccaggtgatggagcgagtgaagctggtttccttgcccaccagtaagaactgg
acctttgggccggccgacatcgaagagctgatcttcatgcttagtgacagtccgggcgtc
atgtgccgcccgtccagagtcaggcagatgtttgcttctagagcgtgtcgcaaatcagtg
atgatcggtacagctctgagtgtcggtgagatgaagaagctggtgattcacatgggagag
atcgagcatccatggaactgtcctcatggcaggcccaccatgagacacctcgccaacctg
gaaatcatctcacaggactga
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