Xiphophorus hellerii (green swordtail): 116726969
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Entry
116726969 CDS
T07363
Symbol
dhx8
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116726969 (dhx8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xhe03041
]
116726969 (dhx8)
Enzymes [BR:
xhe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116726969 (dhx8)
Spliceosome [BR:
xhe03041
]
Complex C
Other components
Step II factors
116726969 (dhx8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
AAA_16
Flavi_DEAD
T2SSE
TsaE
PhoH
ABC_tran
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
116726969
NCBI-ProteinID:
XP_032429842
LinkDB
All DBs
Position
10:complement(14644296..14656612)
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AA seq
1240 aa
AA seq
DB search
MSAVVNVVEHKQDPWKMADVGVDELSQLEYLSLVSKVCTELDNHLGINDKDLAEFVISLA
EKQPSFDGFKALLLDNGAEFTDSLIGNLLRLIQTMRPPSKASTSKASDVSVKPKSEKDKL
KELFPALCKPNDPSPKRVLDEDDVKVAADAMKELEMFMPSVSGADSKVSKSKSEKSKHRS
RSRERERHRDRDRDRDRDRDRDRDRDRGGDRKRRHHSRSRSRSRSRSRDRDRHRDRDRDR
GKRKDKSSRWSDRSPSPRKDLDKDSDRWKDKHVDRPPPEEPSVGDIYNGKVTSIMQFGCF
VQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGSKTSLSMKDVDQD
TGEDLNPNRRRNMGPEGGDDVSMRNPDRPNNLNLGHAPELEQDDTLERKRLTKISDPEKW
EIKQMIAANVLSKEEFPDFDDETGILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMS
PVKIVKNPDGSLSQAAMMQSALAKERRELKQAAREAEMDSIPMGLNKHWVDPLPDVDGRQ
IAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQLSILEQRESLPIYKLKEQLIQAVHD
NQILIVIGETGSGKTTQITQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVSEEYGCCLGQ
EVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDSELGQYAIIMLDEAHERTIHTDVLFGL
LKKTVQKRTDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEVLYTKEPETDYLDAS
LITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEM
QTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPIS
QAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDL
LSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLG
CSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQPEGDHLTLLAVYNSWKNNKFSNP
WCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKATVRVQKAICSGFFRNAAKKDP
QEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAF
FKVSDPTRLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccgtcgtcaacgttgttgaacacaaacaagacccgtggaaaatggcagacgtc
ggagttgacgagttatcgcagctggaatatttgtccttggtgtcgaaggtctgcacggag
ctcgacaaccatctgggaattaatgacaaggatttagccgagtttgtcatcagtcttgct
gaaaaacagccgagcttcgatggattcaaagcacttttactcgacaatggagcagaattc
actgattctctcatcggcaacttgctcagactcatccagacgatgcgacctccgtctaag
gcatcgacaagtaaagcctctgatgtttcagtcaagccaaaaagtgagaaagacaagttg
aaggagctgtttcctgctctgtgtaaacccaacgatccatcaccaaagcgggtgctggat
gaagacgatgtaaaagttgctgctgatgcgatgaaggaactagagatgtttatgcccagt
gtcagcggggcagactccaaagtcagcaagagcaaatcagaaaaaagcaagcatcgcagc
cgaagtagagaacgagagaggcacagggacagggacagggaccgggacagagacagagac
cgggacagggacagggaccggggaggagacaggaagaggcggcaccattcccgatcgcgt
tccagatccaggtctcgctcccgggaccgtgaccggcacagagatcgggacagagatcgt
ggtaaaagaaaggacaagtcttcccgctggtctgatcgttcacccagccccaggaaagac
ctggataaagactctgatcgctggaaagacaaacacgtggaccggcctcctcccgaggag
ccttctgttggcgacatttataacggcaaagtgaccagcatcatgcagtttggatgcttt
gttcagctggagggactaagaaaacgatgggagggtttggtccacatttctgagctgcgc
agagagggacgtgttgcgaatgtggcggacgtcgtcagcaagggccaacgagtgaaagta
aaagtgctgtcgttcaccggctccaagacgagcctcagtatgaaggatgtggaccaggac
acaggagaagatctaaaccccaacaggagaaggaatatgggccccgaaggaggcgatgac
gtctccatgaggaaccccgacaggcctaacaacctgaacctgggccacgcccccgagctg
gagcaggacgacacgctggagcgcaagaggctcaccaaaatctctgacccggagaagtgg
gagatcaaacagatgattgctgcgaatgtgttgtccaaggaagagttcccagatttcgac
gatgagacgggaatcctccctaaggtggacgatgaagaggatgaggacctggaaatcgag
cttgttgaagaggaaccaccgtttttgaggggacacaccaaacagagcatggacatgagc
cccgtcaagattgtcaagaatccggacggctcgctatcgcaggcagccatgatgcaaagc
gctctggctaaggagaggcgggagctgaagcaggcggctcgagaggcagagatggactcc
atccccatggggctgaacaaacactgggtcgacccgctgccagacgtggacggtaggcag
atcgctgctaacatgaggggaatcggaatgatgcccaatgacattccagaatggaagaaa
catgcttttggagggaacaaggcctcgtacggaaagaagactcagctctccatcttggag
cagagggagagtctgcccatctataaactaaaggagcagctcattcaggctgttcacgac
aaccagatcctgatcgtcattggagagacgggctccgggaagaccacccagatcactcag
tacctggcagaggcaggttacaccacgcgggggaagatcggctgtacgcagccgcgacgt
gtcgccgccatgtcggtggccaagcgagtctctgaggagtatggttgctgtctgggacag
gaggtgggttacaccatccgattcgaggactgcacaagccctgagacggtgatcaagtac
atgacagacggtatgctgctgagggagtgtttgatcgactccgagttgggccagtacgcc
ataatcatgctggacgaagctcacgagagaaccatccacactgatgttctgttcggtctc
ctcaagaagacggtacagaagcgcacagacatgaagttgatcgtaacctcagccacgctg
gacgccgtgaagttctcccagtatttctacgaagcccccatcttcaccatcccgggcaga
acatatccagtggaggttctttacaccaaagaacctgagacggactacctggacgccagc
ctcatcaccgtcatgcagattcatctgaccgagcctccaggtgacatcctggtcttttta
accgggcaggaagagatcgacaccgcctgtgagattctctacgagaggatgaagtccctt
ggacccgatgtccctgaactcatcattctccctgtgtattctgctctgcccagcgagatg
cagaccagaatctttgaccctgctcccccaggaagcagaaaggttgtcattgccaccaac
atcgcagagacctctctgaccatcgacgggatctactacgtggtggacccgggcttcgtc
aagcaaaaggtctacaactccaagactggcattgatcagctggtggtgactcccatctca
caggcccaggccaagcagagggcggggcgcgccggcaggacgggtcctgggaaatgttac
aggctttacacggagagagcgtacagggacgagatgctgaccaccaacgttcctgagata
cagaggactaacttggccagcactgtgctgtctctgaaggccatgggcatcaacgacctc
ctctcctttgacttcatggatgctcctcccatggagactctgatcacagccatggagcag
ctttacactctgggagctctggatgatgagggcttgctcacacgcctgggtagaaggatg
gcggagtttcctctggagcccatgttgtgtaagatgctgatcatgtccgtccacctgggc
tgcagtgaagagatgctgaccattgtttcgatgttgtctgttcagaacgttttctacaga
cctaaggacaagcaggccctggctgaccagaaaaaggcaaagttccaccagcctgagggc
gaccacctcactctgctggccgtttacaactcctggaagaacaacaagttctccaacccc
tggtgctacgagaacttcatccaggctcgctccctgcgccgagcccaggatatccgcaaa
cagatgctggggattatggacagacataaactggatgtggtgtcttgcggcaaagccacg
gtgcgggtccagaaggctatctgcagcggtttcttcaggaatgctgctaagaaggatccc
caggagggctacaggaccctcatagaccagcaagttgtttacatccatccctcaagtgcc
ctgttcaacagacagcctgaatgggttgtgtaccatgagctggtgctgaccaccaaggag
tacatgagggaggttaccaccatcgatccgcgctggcttgtagaattcgcgcccgccttc
ttcaaagtctccgatcccactcgcctcagcaagcagaagaagcagcagcgcctcgagccg
ctgtacaatcgatacgaggagccaaacgcctggagaatctcgcgcgccttcagacgtcgc
taa
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