Xiphophorus hellerii (green swordtail): 116727080
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Entry
116727080 CDS
T07363
Symbol
cacna1s
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1S
KO
K04857
voltage-dependent calcium channel L type alpha-1S
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04010
MAPK signaling pathway
xhe04020
Calcium signaling pathway
xhe04260
Cardiac muscle contraction
xhe04261
Adrenergic signaling in cardiomyocytes
xhe04270
Vascular smooth muscle contraction
xhe04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
116727080 (cacna1s)
04020 Calcium signaling pathway
116727080 (cacna1s)
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
116727080 (cacna1s)
09153 Circulatory system
04260 Cardiac muscle contraction
116727080 (cacna1s)
04261 Adrenergic signaling in cardiomyocytes
116727080 (cacna1s)
04270 Vascular smooth muscle contraction
116727080 (cacna1s)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xhe04040
]
116727080 (cacna1s)
Ion channels [BR:
xhe04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
116727080 (cacna1s)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
CAC1F_C
LYRIC
Motif
Other DBs
NCBI-GeneID:
116727080
NCBI-ProteinID:
XP_032430088
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All DBs
Position
1:complement(15656054..15679971)
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AA seq
1849 aa
AA seq
DB search
MATNADAAKPVIMNEEELKKKQREKLKRLQATGGNPRPARTLFLFSLKNPFRKACINIVE
WKTFEIIILLTIFANCVALAVFLPMPEEDSNNTNENLESLEYIFLIIFTFECFMKIIAYG
LVFHEGAYLRNCWNILDFVIVFMGLFTFCLDTINMIAGVEKEKGGGFDMKALRAFRVLRP
LRLVSGVPSLQVVMNSILKAMLPLLHIALLVFLLVTIYAIMGLELFKCKMHKTCYYTGTN
IYATAEGELPAPCAQAGNGRRCTINSSECRPNWEGPNNGITHFDNIGFAMLTVYQCITME
GWTKVLYWVNDAIGNEWPWLYFVPLILLGSFFVLNLVLGVLSGEFTKEREKARSRGEYQK
LRERQQLDEDLHGYMEWITHAEVLDADREGKGLLPLTSGDSDTDSLYDLEGKSRIIYYYR
LGLRWNRFFRMKCLIYVKTKSFYWAVMFLVFLNTLTIATEYHRQPDSLTSLQDVASRILL
VLFVFEMLVKMYALGPRAYFMSLFNRFDFFVVLCGILEMIMLSVGAVAPLGFSVLRCIRL
LRIFKVTKYWTSLSNLVASLLNSVRSIASLLLLLFLFIVIFSLLGMQVFGGKFNFDYNRP
RRSNFDNFPQALISVFQILTGEEWTNIMYNGIMAYGGPEIPGILVSIYFIILFVCGNYIL
LNVFLAIAVDNLAEAESLTSAQKEKAEEKMRKKLLRSKMPEKTDEERERIAKKLAEQRAK
MEGMPTTAKLKIDEFESNVNEVKDPFPPADFPGDDEEEEPEIPISPRPRPMADLQLKEEA
VPLPEASSFFIFGPQNKFRKLCYKIINASSFTNLILLFILLSSISLAAEDPIDPKSYRNQ
ILAYADIVFTTVFTIEIVLKMTVYGAFMHEGSFCRNSFNILDLIVVTVSLLSMGMESSAI
SVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIKTIGNIVLVTMLLNFMFACIGVQLF
KGKFYSCTDPTKVTAEECKGYYLKHMENSLQDTVLAKRQWINSDFNFDNVLNGMLALFTV
STFEGWPKLLYRAIDSAEEDMGPVYNNRVDVSIFFIIYIILIAFFMMNIFVGFVIVTFQE
QGEQEYKNCELDKNQRQCVQYALKARPLRCYIPKNPYQYRVWYIVTSCYFEYLMFFLIML
NTLCLGMQHCNQSNYVTKLSDTLNLIFTVLFTVEMILKLMAFKVRGYFGDPWNVFDFIIV
IGSVVDVILSEVDAALDSSGGLYCLHGCAETDPMEEIAASENASVSITFFRLFRVMRLVK
LLNRSEGIRNLLWTFIKSFQALPHVALLIVMLFFIYAVIGMQIFGKVALVDGTQIYRNNN
FQTFPQAVLMLFRCATGEAWQDVMMASMYGKRCDPKSDFLPGEENTCGSNFAVFYFLSFY
CLCAFLILNLFVAVIMDNFDYLTRDWSLLGPHHLDEFKKIWAEYDPEATGRIKHLDVVTL
LRRIQPPLGFGKFCPHRAACKRLVGMNMPLNSDGTVTFNATLFALVRTALKIKTEGNFEQ
ANEELRAIIKKIWKRTSMKLLDQVIPPIGDDEVTVGKFYATFLLQDHFRKFLKRQEEYYG
YRPSKKSTSGPEIQAGLRSIEEEAAPEMHRAISGDLQNEEEMDRAMDEAAEETIYQRSHG
LFGNRVESFSAEATDAQNSQMTHQRPLQFSESQSESPPNSSALAPSADFFPTTAPKSNTN
NNAFAEFFFDREASPDEFYNPSEDEEPDPRHSWNFTVKTNKTQFPYEPEWMESRSRSSKT
AADQLVQEALEMGGLAALSKDPGFVSVTKKEMADAMHIPISEMESVARGILSERSDSIPS
VKKRRPVPVPPPVPAGGGQKPSQPEPAVRKKRRPVPTVPSRRKQNDSEV
NT seq
5550 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaacgcggatgcggccaagccggtcatcatgaacgaggaggaactgaagaag
aagcagagagagaagctgaagcggcttcaggccacaggtggaaaccctcgacctgccagg
accctcttcctcttctccctcaaaaaccctttccgaaaggcctgcatcaacattgtggag
tggaaaacctttgaaatcatcatcctgttaaccatctttgccaactgtgtggctctggct
gtgttcctgcccatgcctgaagaagacagcaacaacaccaacgagaacttggaaagtctg
gagtacatcttccttatcatcttcacgttcgagtgcttcatgaagatcatagcgtatggg
ctggtgttccatgaaggggcctatttaaggaactgttggaacatattggactttgtcatc
gttttcatgggactcttcaccttttgcttggataccataaacatgatcgcaggagtggag
aaggaaaagggtggagggtttgacatgaaggcactgagagcgttcagagtactgcggccc
cttcgacttgtttcaggagtacctagccttcaggtggtgatgaactccatcctcaaagcc
atgctgcctctgctgcacattgccctgctggtgttcttactggtcaccatctacgccatt
atgggactggagttgttcaaatgcaaaatgcataagacctgttactacactggcacaaac
atctatgcaacagcagaaggtgagctgcctgctccgtgtgctcaggctggaaacggacgc
cgctgcacgatcaatagttcagagtgcaggcctaactgggaaggtcccaacaacggcatc
actcacttcgataatattggcttcgcaatgctgacagtttaccagtgcatcaccatggag
ggatggaccaaagtcctttactgggtgaatgatgctatcggaaacgaatggccctggctc
tatttcgttcctctcatcttgctgggctccttctttgtgcttaatcttgtcctgggtgtt
cttagtggagagtttaccaaagagcgagagaaggccaggtcacgaggagagtatcagaag
ttgagggagcgtcagcagctggatgaagacctccatggctacatggagtggatcactcat
gctgaagtccttgatgctgacagagaaggcaaaggccttctgcctcttaccagtggagac
tctgacacagacagcctgtatgacttggaaggaaagagtcgtatcatctactattaccgg
ctgggccttcgctggaatcgtttcttcaggatgaagtgtctgatttatgtgaaaaccaag
agcttttattgggctgtgatgttcctcgtattcctcaacacactgaccatagccacagag
taccaccgacagcctgactccctgacgtctctgcaagatgtagcgagccgaatcctgctg
gtgctgtttgtctttgagatgctggtgaagatgtacgctctgggacccagagcctacttc
atgtcgctgtttaaccgtttcgacttcttcgtcgtgctctgcggtattctggagatgatc
atgttgtctgtaggagccgtggctcctctgggtttctccgtgctcaggtgtattcggcta
ctgaggattttcaaagtcacaaagtactggacctctctaagcaacctggtggcctctctc
ctcaactccgttcgctccattgcttctctgctcctccttctcttcctctttattgtcatc
ttctcactcctgggaatgcaggtgtttggagggaagttcaactttgattacaaccgtccc
aggcgcagtaactttgacaactttcctcaggccttgattagtgtatttcagatccttaca
ggagaggaatggaccaacatcatgtacaatggtataatggcatatggagggcctgagatt
cctgggattctagtttccatctatttcattatccttttcgtctgtggaaactatatcctc
ctcaatgtattcttggccattgcggtggacaacctggcagaggccgagagtctgacttcg
gctcagaaggaaaaggcagaagagaagatgagaaagaagctgctaaggtccaaaatgcct
gaaaagactgatgaggagagggagaggatagcaaagaaactggctgagcagagggccaaa
atggagggaatgcccactacagccaaactcaaaatcgatgaatttgagtcaaatgtcaat
gaagtgaaggatccatttccacctgctgatttcccaggtgatgacgaagaggaagaacct
gaaatcccaatcagtcctcggccccggccaatggccgatctgcagctcaaggaagaagcc
gttcctttgccagaagctagctccttttttatatttggtcctcagaacaagttccgtaag
ctgtgttacaagatcatcaacgcttcgtccttcaccaacctcatcctcctcttcatcctg
ctctcgtccatctcgctggcagctgaagatcccatcgatccaaaatcctatagaaaccag
atcttagcctatgctgatattgtcttcacaactgttttcaccattgagattgtgctgaag
atgactgtgtatggtgcgttcatgcacgaaggctctttttgtcgtaactcgttcaacatc
ctggatctgattgtggtcacagtgtcactcctgtctatgggaatggaatccagcgccatc
tctgtggtgaagattctcagggtgttgagggtgctgaggcctctcagagccatcaacaga
gcaaaaggtttaaagcatgtggtccaatgtgtgtttgtggccatcaagacaatcggcaac
attgtcctggtcaccatgctgctgaatttcatgtttgcctgcattggagtgcagctcttc
aagggcaaattctacagctgcacagacccgaccaaagtgactgcagaggaatgcaaggga
tattacttgaagcacatggagaactccctgcaagacacagttctggcgaaaagacagtgg
ataaacagtgactttaactttgacaacgtgctcaatgggatgctggctctgttcaccgtc
tcaacgtttgagggctggcccaagcttctttacagagccatagactcagcagaagaagac
atgggtccagtctataacaaccgtgtggacgtgtccatcttcttcattatctacatcatt
ctcatcgccttcttcatgatgaacatctttgtgggctttgtcatcgtcacctttcaggag
cagggagagcaggagtacaagaactgcgagctcgacaagaaccagcgtcagtgtgtgcag
tacgctctgaaggctcgacctcttcggtgctacatcccaaaaaacccgtaccaatacaga
gtgtggtacatcgtcacctcatgctactttgagtacctcatgttcttcttaattatgctg
aacacattgtgcttagggatgcagcactgcaaccagtcgaattatgttaccaagctgtca
gacactctgaacctgatcttcactgtgctcttcactgtggagatgatacttaagctcatg
gccttcaaagtcaggggctactttggagatccctggaacgtctttgatttcataatagtc
atcggtagcgttgttgacgtcatcctgagtgaagttgatgccgccctggactccagtgga
ggactgtactgtcttcatggctgtgctgagacagatcctatggaagaaattgcggcttct
gaaaacgcctcggtctccatcacattcttccgactcttccgtgttatgcgtttagtcaag
ctgctgaaccgttcggagggcatccgtaacctgctctggaccttcatcaagtctttccag
gctctccctcatgtagctctcctcattgtgatgctctttttcatttatgctgtgatcgga
atgcagatctttggaaaggtagccttagtggacggcacccaaatctaccgcaacaacaac
ttccagacattccctcaggccgttctgatgttattccgatgtgcgactggtgaggcttgg
caggatgtcatgatggcgtcgatgtacgggaagaggtgtgaccccaaatctgacttcctg
ccaggagaagagaacacctgcgggtccaactttgctgtcttttacttcctcagcttctac
tgtctctgtgccttcctgatcctcaatctgtttgttgctgtcatcatggacaactttgac
tatctcacccgtgattggtctcttcttggtccacaccatctggacgagttcaagaaaatc
tgggcagaatacgaccccgaggccacagggagaatcaaacatctggatgtggtgacgctg
ctgcgacggatccagcctcctcttggcttcggcaagttctgtcctcatcgcgctgcgtgc
aagcgtttggttgggatgaacatgcctctcaacagcgatggcaccgtcacgttcaacgcc
accttgtttgctctggtcagaacagcactaaaaatcaaaactgaaggaaactttgagcag
gccaatgaggagcttagagcgattataaagaaaatctggaaacgcaccagtatgaaactg
ctggaccaggtcatcccccctataggagatgacgaggtgactgtggggaaattctacgca
acatttctcctccaagaccatttccgaaagtttctgaaacgccaggaggagtattacggc
taccgtccatcaaagaagagcacctcgggtccagagattcaggcgggtttgaggagcata
gaggaagaagcagctccagagatgcacagggcaatttcaggagacttgcagaatgaggaa
gaaatggacagagcgatggacgaagctgcagaagaaaccatttatcagcgttctcatggt
ctgttcggcaaccgagtcgaatccttctctgccgaggccaccgacgctcagaactcccag
atgacccaccagcggcccctccagttctcagagagccagtctgagtctccccccaactcc
tctgccctggcgcccagcgcagactttttccccacaacagcaccaaaaagcaacacaaac
aacaacgccttcgcagaatttttctttgacagagaagccagtccagatgagttctataat
ccctctgaggacgaagaaccagacccaagacactcctggaacttcacagtaaaaacaaac
aaaacacagttcccttatgagcctgagtggatggagagtcggagtcggagctcaaagact
gcagccgatcagcttgtccaggaggcccttgaaatgggcggtctggccgccttgtccaaa
gatcctggttttgtctccgtaactaagaaggagatggccgacgccatgcatatccccatt
tcagagatggagagcgtggcgaggggcatcctcagcgaacgctccgacagcatcccctct
gtcaaaaaacgacgtcccgtccctgtacctccacccgtccctgctggaggaggacaaaaa
cccagccagccggagccggctgtcagaaagaagagacgtccggttcccacagttcctagc
cgaaggaaacagaatgactccgaagtttag
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integrated database retrieval system
