Xiphophorus hellerii (green swordtail): 116727084
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Entry
116727084 CDS
T07363
Symbol
smc1a
Name
(RefSeq) structural maintenance of chromosomes protein 1A
KO
K06636
structural maintenance of chromosome 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04110
Cell cycle
xhe04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
116727084 (smc1a)
04114 Oocyte meiosis
116727084 (smc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xhe03036
]
116727084 (smc1a)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
116727084 (smc1a)
Meiosis-specific proteins
Cohesin complex and associated proteins
116727084 (smc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_23
AAA_21
AAA_29
ABC_tran
AAA_15
Motif
Other DBs
NCBI-GeneID:
116727084
NCBI-ProteinID:
XP_032430103
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All DBs
Position
1:15644927..15655924
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AA seq
1231 aa
AA seq
DB search
MGYLKLIEIENFKSYKGRQIIGPFHKFTAIIGPNGSGKSNLMDAISFVLAEKTSNLRVKT
LKDLIHGAPVGKPAANRAFVSMVYQEDNGEERSFTRVIIGASSEYRINNKVVGLPEYSEE
LEKLGILIKARNFLVFQGAVESIAMKNPKERTALFEEISRSGELAQEYDRRKKEMVKAEE
DTQFNYHRKKNIAAERKEAKQEKEEAERYQRLKDEVARASVQLQLFKLYHNEVEIEKLNK
ELGQRNKEIDKDRKKMDHVEEELKDKKKELGRLMREQQTIEKEIKEKDSELNQKRPQYIK
AKENTAHKIKKLEAAKKSHQNAQKMYKKRKADMDELDKEMRAVELAKQEFEERMEEEAQS
QGQDLTLEENQVKQYHRLKEEASKRAATLAQELEKFNRDQKADQDRLDLEERKKVETEAK
IKQKIREIEENQKRIEKLEDYIATSRQSLDEQKRMEEELTEEVEMAKRRIDEINMELNQV
MEQLGDARIDRQENSRQQRKAEIMESIKRLYPGSVYGRLIDLCQPTQKKYQIAVTKVLGK
NMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTDEKLRELRGAKLVIDVIRY
EPPHIKKALQYACGNALVCENVEDARRIAFGGPYRHKTVALDGTLFQKSGVISGGASDLK
AKARRWDEKAVDKLKEKKEKLTEELKEQMKAKRKEAELRQVQSQAHGLQMRLKYSQSDLE
QTKTRHLSLNMQEKSKLESELANFGPRINDIKRIIQSREREITDLRDRMNLVEDEVFVEF
CKEIGVRNIREFEEEKVKRQNEIAKKRLEFETQKTRLGIQVDYEKNQLKEDQEKVMMWEQ
TVKKDEAEIERLKKEEHRHMKIIDETMAQLQDLKNQHLTKKSEVNDKNHEMEEIRKKLGG
ANKELTQLQKEVTAIETKLEQKRSDRHNLLQACKMQDIRLPLRSGTMDDISQGEGSSQTD
DSSSQRTSSSVLAKEALIEIDYSNLSEDLKDALSEEEIKAETNTLQQRLNEQQSILQRIS
APNMKAMEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNTCFDSVATNI
DEIYKALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALL
FAIHSYKPAPFFVLDEIDAALDNTNIGKVANYIKDQSVQNFQAIVISLKEEFYTKADSLI
GVYPEQGDCVISKVLTFDLSQYPDANPNPNE
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgggctacttaaaactcatagagatagaaaacttcaaatcgtacaagggacgacaaatc
atcggaccctttcacaagtttacggcaattatcggacccaatggatcgggtaaatccaac
ctcatggatgccatcagctttgtgttggcagaaaagacgagtaacctgcgtgtcaagact
ttgaaggatctaatccatggagctcctgtggggaagccagctgccaacagagcatttgtc
agcatggtgtaccaagaggataacggagaggagcgttccttcacacgggtcattattggg
gcctcatccgagtaccgcataaacaataaagtggttgggctacctgaatacagcgaggag
ctggaaaaacttgggattctgatcaaagccagaaactttcttgtctttcagggggctgtg
gagtccattgccatgaagaaccccaaagagcgaacggcgctgtttgaggagatctcacgt
tccggggagttggcacaagagtatgaccgcaggaagaaggagatggtgaaagcagaagaa
gacacacagttcaattatcaccgcaagaaaaacattgctgcggagcgcaaagaagccaag
caggagaaagaggaggctgagcgataccaacgccttaaagacgaggtagccagagccagt
gtacagttacagctcttcaagttgtaccacaatgaggtcgagatcgagaaactgaacaaa
gagcttggccagcggaataaggaaattgataaggaccgtaaaaagatggaccacgttgaa
gaggagctgaaggacaagaagaaagagttgggcaggctgatgagggagcagcagaccatc
gagaaagaaatcaaagaaaaagactctgagctgaatcaaaagaggcctcagtatatcaag
gccaaagagaacacggcacacaaaatcaaaaagctcgaagctgcgaaaaaatctcatcag
aacgcccagaagatgtacaagaagcgcaaagctgacatggatgagctggataaggagatg
agagcggtggagttggccaagcaggagtttgaggaaagaatggaggaggaggctcagagc
cagggccaggacctcacactggaggaaaaccaggtgaagcagtaccatcgcctgaaggag
gaggccagtaagcgtgctgccactctggcccaggaactggagaagttcaaccgggaccag
aaggctgaccaggaccgccttgatttggaggagaggaagaaagtggagacagaggcaaaa
atcaagcagaagattcgtgaaatagaagaaaaccagaagcgtattgagaagctagaggac
tacatcgccaccagcagacagtcacttgatgagcagaagcgcatggaggaggagctgacg
gaggaagtagagatggccaagaggaggattgatgaaataaacatggagcttaatcaggtg
atggagcagctgggagatgccaggatcgacagacaggagaacagtcgacagcagcgcaag
gcagaaatcatggagagcatcaagagactttaccccggatctgtgtacggccgcctgatc
gacctgtgccagcccactcagaagaaatatcagattgctgttactaaagtgttgggcaag
aacatggacgccatcatcgtcgactcagagaaaaccggccgagactgcattcagtacatc
aaggagcagagaggagagcctgagacctttcttcctcttgactatcttgaggtcaaacca
acagatgaaaagctgagagagctgcgcggggccaagctggtgattgatgtgatccgctac
gagccgccacacatcaaaaaagccctccagtacgcttgcggcaacgctctggtttgtgag
aatgtcgaggacgcacgaaggatcgctttcggagggccttacagacacaagactgtagcc
ctggatggcacgttgttccagaagtcaggagtcatctccggaggagccagcgacctgaag
gccaaggccagacgctgggacgagaaggcggtggacaaactaaaggagaagaaggaaaaa
cttacagaggagctaaaggagcaaatgaaggcaaagaggaaggaggcagaactgcgtcag
gtgcagtctcaggcacacggcctgcagatgagactcaaatactcccagagcgacctggag
caaaccaaaaccaggcacctctccctcaacatgcaggagaaatctaaacttgagagtgaa
cttgcaaattttggccctcgcatcaatgacatcaagaggattatccagtcccgtgagcga
gagatcactgacctccgagaccgcatgaacctagtggaggacgaggtgtttgttgaattc
tgtaaggagatcggagtgagaaacatccgagaatttgaggaggagaaagtgaagaggcag
aatgaaatcgcaaagaagcgtcttgagtttgagacccagaagacccgcctgggaatccag
gtggactatgagaagaaccagctgaaggaggaccaggagaaagtcatgatgtgggagcaa
actgttaagaaagatgaggctgagatagagcgccttaagaaggaggagcacaggcacatg
aaaatcattgatgagacgatggcccagctgcaggacctgaagaaccaacatctcaccaag
aaatctgaagtcaacgataaaaaccacgaaatggaggagattcgcaaaaaactgggaggc
gctaacaaagagctgacccagctccagaaggaggtcaccgctatcgagaccaaactggag
cagaagcgcagtgaccgccacaacctgctgcaggcctgcaagatgcaggacatcaggctg
ccgcttcgctctggaaccatggacgatatcagccagggagaagggagctcccagacagat
gactccagcagtcagaggacgtccagcagcgttctggctaaagaagctctaatagaaatc
gactacagcaacttgtctgaagatctgaaggatgcattgtcagaagaggagataaaagcg
gagacaaacacactgcagcagcgtctgaacgagcagcagagcatcctgcagaggatcagc
gctcccaacatgaaggccatggaaaaactagagagcgtcagggacaagttccaggagacc
agtgatgagtttgaggccgctcgtaagagagccaaaaaggcaaagcaagccttcgagcag
atcaagaaagagaggtttgatcgttttaatacctgcttcgattctgtggccaccaacatc
gatgagatctacaaagctctgtcacgcaacagcagcgcccaggcttttctgggtccagaa
aacccagaggaaccgtatctggatggtatcaattataactgtgtggcgccagggaaaagg
ttcagacccatggataacctgtctggaggagagaagacggttgctgccctggctctgctt
tttgctatccacagctacaaaccagcgccgttcttcgtcctggatgagatcgatgccgct
ctggacaacactaatattggcaaagtggccaattacatcaaagaccagtcagtacaaaac
ttccaagctattgtcatttctctgaaggaggagttctacaccaaggctgactctcttata
ggcgtttatccagagcaaggagattgtgttatcagcaaagttctcacctttgacctgtcg
cagtatcctgatgccaacccgaatccaaatgagtaa
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