Xiphophorus hellerii (green swordtail): 116727147
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Entry
116727147 CDS
T07363
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04510
Focal adhesion
xhe04512
ECM-receptor interaction
xhe04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116727147
04518 Integrin signaling
116727147
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116727147
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xhe00536
]
116727147
Glycosaminoglycan binding proteins [BR:
xhe00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116727147
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
116727147
NCBI-ProteinID:
XP_032430283
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All DBs
Position
1:23233395..23258643
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AA seq
1490 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLVVVRCQEEDDQEAGGCIQDARVYNDKDVWKPEPCRICVC
DSGAVLCDEIICEEIKECANPIIPSGECCPICPADASAPIEAFGAKGQKGEPGEIADVVG
PRGPPGPMGPPGEQGTRGETGAKGDKGNPGPRGRDGEPGTPGNPGPHGPPGPPGPPGLGG
NFAAQMSAGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGAPGETGEPGPAG
SIGPRGPLGPSGKPGSDGDPGKPGKSGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDG
AKGETGAAGAKGEGGAAGESGSNGPMGPRGLPGERGRPGASGAAGARGNDGLPGPAGPPG
PVGPAGAPGFPGSPGTKGEAGPTGARGAEGAQGPRGEAGTPGSPGPAGAGGNPGTDGIPG
AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGLKGESGPKGELGPVG
PQGAPGPAGEEGKRGARGEPGTAGPNGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPG
AAGPKGATGDPGRTGEAGLPGARGLTGRPGDAGPQGKVGASGAPGEDGRPGPPGPQGARG
QPGVMGFPGPKGANGEPGKPGEKGLVGRSGLRGLPGKDGETGPSGPSGPAGPAGERGEQG
QPGPPGFQGLPGPTGSPGEGGKPGDQGVPGEGGAPGAVGPRGERGFPGERGGAGSQGLQG
PRGLPGTPGSDGPKGAIGPAGALGGQGPPGLQGMPGERGAGGIPGAKGDRGDNGQKGPEG
APGKDGGRGLTGPIGPPGPSGPNGAKGETGPTGPSGAPGVRGAPGDRGELGPPGPAGFAG
PPGADGQPGAKGELGESGQKGEAGASGPQGSSGAPGPVGPTGVSGPKGARGAQGAPGATG
FPGAAGRVGPPGPNGNPGGAGPAGPAGKDGPKGVRGDAGPPGRPGDVGLRGPAGLSGEKG
EPGKEGPPGAAGPSGPQGFAGGRGTVGLPGQRGERGFPGLPGPSGEPGKQGASGGAGDRG
SPGPVGPPGLTGPAGESGREGTPGSDGPPGRDGSAGVKGERGNTGPAGAPGAPGAPGAPG
PVGPLGKQGDRGEAGTQGPAGPPGLAGARGIAGPQGPRGDKGEAGESGERGQKGHRGFTG
LQGLPGPPGPAGDSGSAGPAGPSGAKGPPGPLGPAGKDGSNGQPGPIGPPGPRGRSGETG
SAGPPGNTGPPGPPGPPGPGIDISAFAGLGQTEKSPDPLRYMRADEASSSLRQHDIEVDS
TIKSLNTQIENLRNPDGTQKNPARSCHDLKLCHPEWKSGDYWVDPNLGSTADAIKVFCNM
ETGETCVYPSITKVPKKNWWTSKSRDRKHIWFGETMNGGFHFSYAQDGLAASAANVQLTF
LRLLSTEASQNFTYHCKNSIAYMDQASGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDG
CKSHTGRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDIGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagttttgtggactcaaggactgttctgctacttgtagcatctcaagttgtttta
ctagtcgtggtcagatgtcaggaagaagatgaccaggaggcaggtggctgcatccaggac
gcccgggtgtataatgataaggatgtgtggaagccagagccgtgccgcatctgcgtgtgt
gacagcggagcggttctgtgcgatgagataatctgcgaggagatcaaagagtgtgccaac
cctatcatcccatctggagaatgctgccccatctgccccgctgatgcctctgcccccatt
gaggcgtttggtgctaagggccagaagggagaaccaggagagattgcagatgtcgtagga
cctagaggaccaccaggccccatgggccccccaggtgagcaggggacgcgtggagaaact
ggcgcaaagggtgacaagggaaatcctggaccaagaggaagagatggcgaacctggcaca
cctggaaaccccggaccccacggcccacctggaccacccggcccaccagggctgggaggg
aactttgctgctcagatgtctgcaggctttgatgaaaaggctggaggtgctcagatgggt
gtgatgcaaggaccaatgggtcccatgggtccccgtggcccccctggacctagcggagct
cctgggcctcagggtttccaaggagcacccggagagactggagagcccggtccagctgga
tcgattggacctcgtggaccacttgggccatctggaaaaccaggaagtgacggtgatcct
ggaaaacctgggaaatccggtgagcgcggacctgccgggcctcagggagctcgtggattc
cctgggacacctggacttcctggaatcaaaggacacagaggtcaccctggtctggatgga
gcaaagggagagactggtgctgctggagccaagggtgagggtggtgctgctggagaaagc
ggcagtaatggaccgatgggtcctcggggtctacctggtgagaggggacgtcctggtgct
tctggagctgcaggagcccggggaaacgatggcttgcctggtccagctggtcccccgggc
ccagttggtcctgcaggagctcccggtttcccaggatccccaggcaccaagggtgaagca
ggtcctactggcgcccgtggagctgaaggagcacagggaccccgcggagaggccggcaca
ccaggatcacctggaccagctggggcggggggtaaccccggcactgatggtattcctggg
gctaaaggttctgctggggctcctggcattgctggcgcacctggcttccccggcccccga
ggcccacctggaccacagggagcaactggacctcttgggcccaaaggacaatctggagat
cctggtcttccaggattgaagggtgaatctggaccaaaaggagagctgggccccgttggg
cctcaaggggctcctggccctgctggagaagaagggaagcggggtgcgaggggagagccg
ggaactgctgggccaaacggacctccaggagaaagaggagctcctggtaaccgtggtttc
ccgggtcaggatggtcttgctggtgcaaagggagcccctggtgaccgtggcgtccctggt
gctgctgggccaaaaggtgccactggagaccctggacgtacaggcgaggccggcctgcca
ggagccagaggtcttactggtcgtcctggagatgctgggccgcagggcaaagttggagct
tctggcgctccaggtgaggacggaagacccggtccacctggtccccagggcgcacgcgga
cagccgggtgtcatgggattccccggaccaaaaggagcaaatggtgaacctggaaaacca
ggagagaagggactcgttggtcgatctggtctgagaggactacctggaaaagatggtgag
actggtccttctggaccttctggacccgctgggcctgctggagagagaggagagcaagga
cagcctggtcctcctggcttccagggtctgcctggcccaactggttccccaggagagggc
ggaaaacctggagatcagggtgttcctggagagggtggagctcctggtgctgttggaccc
agaggtgagcgtggtttccctggtgagcgcggtggcgctgggtctcagggtcttcaagga
ccgcgcggacttcctggaacaccaggaagtgacggacccaagggagcaattggaccagct
ggagctcttggaggtcaaggacccccaggcctgcagggtatgcctggagagagaggagct
ggaggcatcccaggagccaagggagacagaggtgataatggacagaaggggcctgaaggc
gctcctggaaaagacggtggtagaggtttgactggtcccattggtcctcctggcccatct
ggacccaacggtgccaagggtgagactggaccaactggtccttctggtgctcctggggtt
cgtggtgctcctggtgaccgcggtgagcttggtcctcctgggcctgcgggcttcgctgga
cctcctggtgcagatggtcagccaggtgctaagggagagctcggtgagtccggacagaaa
ggagaggctggtgcttctggacctcagggatcctccggagctcctgggcctgtgggacct
actggtgtatctggacctaagggagcacgcggtgcccagggagctcctggagcaacaggt
ttccctggtgctgctggcagagttggacctcctggtcccaatggtaaccctggcggtgcc
ggtcctgctggtcccgctggtaaggacggtccgaaaggtgttcgcggtgacgccggtcct
ccaggacggccaggagacgttgggcttcgtggaccagctggactgtcaggagagaaggga
gagcctggaaaggagggacctcctggagctgctggcccttcaggtccgcagggttttgct
ggaggtcgtggtactgttgggttgcctggtcagcgcggtgagagaggtttccctgggctc
cctggaccttctggagagcctggtaaacagggagcatctggtggtgctggtgaccgagga
tcgcctggacccgttgggcctcctggactcactggacctgctggagagtcaggcagagag
ggaacgcctggatcagatggacctcctggtagagatggatctgctggagtcaagggagag
cgaggtaacaccggtcctgcaggtgctcccggagctccaggcgcccctggggctcccggg
ccagttggacccctaggcaaacagggagacagaggagaggctggcactcaaggacctgca
ggacctccaggactggctggcgctcgaggaattgctggaccccaaggaccacgtggagat
aagggggaggcgggtgagtctggagagagaggtcagaagggtcaccgtggcttcaccggt
ctgcagggtcttcctggacctccaggtcccgctggagattccgggtctgctggacctgct
ggaccaagcggcgccaagggaccccctggtccacttggacctgctggcaaagacggatct
aatggacagcctggtcccattggaccccccggacctcgaggacgctctggagaaactggt
tctgctggtcctcctgggaacaccgggccccctggtcctcctggcccaccaggtccaggc
attgacatctccgcttttgctggcctgggccagactgagaagtctcccgatcctctcagg
tacatgagggccgacgaggcctccagctccctgaggcagcatgacattgaggtcgattcc
acaatcaagtccctcaacacccagattgagaacttgcgcaaccctgacggcacccagaag
aacccggctcgctcttgccatgacctaaagctgtgccaccctgagtggaagagcggtgac
tattgggtggatcctaacctcggaagtacagccgacgcaatcaaggtcttctgcaacatg
gagacaggagagacctgcgtctacccaagcatcacaaaagtaccaaagaagaactggtgg
accagcaagagcagggaccgcaaacacatctggttcggagagacaatgaatggcggcttc
cacttcagctatgctcaggacggtcttgctgccagcgctgccaacgtccagctgaccttc
ttgaggcttctgtccactgaagcgtcccagaactttacttatcactgcaagaacagcatt
gcctacatggatcaggcctcaggaaacctgaagaaggcgttgctactgcagggctccaac
gacgtggagatccgcgccgagggcaacagtcgcttcacatacagcgtgttggaggatggc
tgcaagagtcacacaggccggtggggcaagactgtctttgagtacaaaacacagaaaacc
tcccgtctgccaattgtagacattgctccaatggacatcggaggagcagatcaagaattt
ggagtggatataggcgccgtctgcttcttgtaa
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integrated database retrieval system
