Xiphophorus hellerii (green swordtail): 116727350
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Entry
116727350 CDS
T07363
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
116727350 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116727350 (msh2)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
116727350 (msh2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
116727350
NCBI-ProteinID:
XP_032430631
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Position
10:10077987..10094940
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AA seq
937 aa
AA seq
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MAVQPKQNQNLSLDSAAEHGFLNFIFSMPEKPDTTFRIFDRNDYYTVHGKDAIFAAKEVF
KTNGVIKYLGSGSRKLESVILSKLNFEAFAKDLLLVKQYRVEVYRNQSKSSKEHDWRIEY
KASPGNLTQFEDILFGGGSGGEGCAGVVAVRFATGADGQRVVGVGYVDAAQRTMGVCEFP
DNEIFSNLESLLVQISPKECLLAQGECSAEGNKLREVVQRGGVLVSDRKRAEFSSKDIVQ
DLNRLLRSKRGETVVSNTLPELDKQVAMSCLAAVVRFLELLSDESNFNSFSLTTLGLGQY
MRLDNAAVRALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEER
LDLVESFVCDSELRQTCQEDLLRRFPDLHRLAKKFHRHTATLQDCYRVYQAVSHIPSLIT
ALESYSGSYKVLLHSVFTSPLTDLQTDFIKYQEMIETTLDVNQIEHHEFLVKASFDPALS
ELREKMDALEKSMQAVLSSAARELGLEAGKTVKLESNAVLGFYLRVTCKEEKSLRNNKKF
TTLDVQKNGVRFTNSKLSSLNEEYTRNREEYEEAQNAIVKEIINIASGYVDPLQTLSDVI
AQLDAVASFAVASVSAPVPYVRPRLLDDGRRRLELLQARHPCMETDADTAFIPNDISFVQ
GEKSFYIITGPNMGGKSTFIRQVGLIALMAQIGCFVPCEKAELSVIDSVLARVGAGDSQV
KGVSTFMSEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEHISSKISCFCL
FATHFHELTALAAQQPAVHNLHVTALTTHNTLTMLYRVKPGVCDQSFGIHVAELACFPLS
VLAVAREKAEELEEFQEPVGDDSKRDEEPEVKRRRTDKQVGEKLIQDFLEKVKALPVVTM
TEEEVKAELRRIKQDLVAKNNTYISEILARCAPVKTA
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccgaagcagaaccagaacctgtccctggacagcgcggctgaacacggc
tttctgaacttcatattctctatgccggagaaaccggacacaaccttcaggatattcgac
cggaacgactactacaccgtccacgggaaagacgccatatttgctgccaaggaggttttt
aagactaacggagtcatcaagtatctgggctcagggagccgtaagctggagagcgtgatc
ctgagcaagctgaacttcgaggcctttgcgaaggatctgttgctggtgaagcagtaccga
gtggaggtatacaggaaccaaagcaagagcagcaaggagcacgactggaggatcgagtac
aaggcctctccaggaaacctgacccagttcgaggacattctgtttggcggaggaagcgga
ggcgagggatgcgcgggagtggtcgccgtgcggtttgcgacgggagccgatggacagcga
gtggtcggggtcggctacgtggacgcagcccagaggaccatgggggtgtgtgagtttccg
gacaacgagatcttctccaacctggagtctctactcgtccagatcagccccaaagagtgt
ctgctggctcagggagaatgcagcgctgaggggaacaagctccgggaggtggtgcaacgt
ggcggcgttctggtctctgacaggaagagagcagagttcagcagcaaggacatcgtccag
gatctcaacaggctactgcgatctaagagaggagagacggtggtgagcaacacgctgcct
gaactggacaagcaggtggccatgtcatgtttggctgctgtggttcgattcctcgaactt
ctctccgatgagtcgaacttcaactctttcagcctcacaacgctggggctggggcagtac
atgaggctggacaacgccgccgtcagggctctcaacctcttccagggttcgcctgacgac
accagtggagctcattcattggccggtttgttgaacaagtgccgcactccgcagggtcag
cggctggtcaaccagtggatcaaacaaccacttatggacaaaaccaaaatagaggaaaga
ctggaccttgtggagagttttgtgtgcgactcagagctgaggcagacttgtcaggaggat
ctgctgcgacgctttccagatctccaccgcctggccaaaaagtttcaccgtcacacggcg
acgctgcaagactgttaccgcgtctaccaggccgtgagtcacatcccttctctcatcacg
gctctggagagctactcaggcagctacaaggtgttgctgcattcggtgttcacctcgcct
ctcactgacctgcagacggatttcatcaagtaccaggagatgattgaaaccactctggac
gtgaatcagatcgaacaccatgagttcctggtgaaggcgtcgttcgatcccgctctgagt
gagctcagggagaagatggacgccctggagaaaagcatgcaggctgtgctgagcagtgca
gccagagaactaggtctggaagccggtaagacggtgaagctggagtccaacgccgttctg
ggcttctacctgcgggtcacgtgcaaggaggagaagagtctgaggaacaacaagaagttc
accacgctggatgttcagaagaacggcgttcgcttcacaaacagcaagctgagctctctg
aacgaggagtacaccaggaacagggaagagtacgaggaggcccagaacgccatcgtcaaa
gagatcatcaacatcgcctcaggttacgtggatccccttcagacgctgagtgacgtcatc
gcgcagctcgacgcggtggcgagcttcgccgtggcgtcggtgtccgctccggttccatac
gtccggccccgactgctggacgacggccgcaggcgtctggagctgctgcaggccagacat
ccctgcatggagacggacgcggacaccgccttcatacccaacgacatcagcttcgtccag
ggggagaagagcttctatattataacaggaccaaacatgggagggaagtccacatttatc
cgtcaggtgggtctgatcgcgctgatggctcagatcggctgcttcgtgccgtgcgagaag
gctgagctcagcgtgattgacagcgttctggcccgagtgggagcaggagacagccaggtg
aagggagtgtccaccttcatgtctgagatgttggaaactgccgccatcctccgctctgcc
acggaaaactcgctcatcatcatcgatgagctcggcaggggaacctctacgtacgacggc
ttcgggctggcctgggccatcagtgaacacatctcctccaaaatcagctgtttctgcctc
ttcgccacgcacttccacgagctgacggccttggcggcacagcagccggccgtccacaac
ctgcacgtcaccgccctgacgacccacaacacgctcacaatgctgtaccgagtcaaacca
ggtgtgtgcgaccagagttttgggatccacgtcgctgagctggcctgcttccccctgtcg
gtgctggccgtggcgagggagaaggcggaggagctggaggagttccaggaacctgtgggg
gacgattcgaagcgggacgaagagcccgaggtcaagagacggcggacagataagcaagtg
ggagaaaagctgatccaggacttcctggagaaggtgaaggcacttcctgtcgtcaccatg
actgaggaggaggtgaaggcagagctcaggagaataaagcaggacttggtggccaaaaat
aacacgtacatcagtgagatacttgcccgctgcgctcctgtaaaaactgcctga
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