Xiphophorus hellerii (green swordtail): 116727371
Help
Entry
116727371 CDS
T07363
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xhe03016
]
116727371 (trub1)
Enzymes [BR:
xhe01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
116727371 (trub1)
Transfer RNA biogenesis [BR:
xhe03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
116727371 (trub1)
Prokaryotic type
116727371 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
GAIN_A
Motif
Other DBs
NCBI-GeneID:
116727371
NCBI-ProteinID:
XP_032430654
LinkDB
All DBs
Position
10:24625349..24629384
Genome browser
AA seq
273 aa
AA seq
DB search
MAGNVSGAAGPISSLSKLQSLNGLFAIYKKQGPTSADVLNKFKETLLREAGVQNPNSRKR
KKQYLKMGHGGTLDSAASGVLVVGIGNGTKKLSTMLTGSKKYVAVGELGKATDTLDATGT
VIMEKEFEHITRLDMEEKLKAFTGDIMQVPPLFSALKKDGQRLSVLLKKGHQVEAKPARP
VTVHSLTLQEFKPPLFTLDIECGGGFYVRSLVDDLGKALSSCAHVKELVRMKQGQFTLQD
HVLHEEQWTLQSVVGALQPCPEEDQRTDSPRSP
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atggctgggaatgtgagcggcgcagcgggaccaataagttctctgtctaagcttcagtct
ttaaatggattgttcgccatatataagaaacaagggccgacatctgctgatgtgttaaac
aagttcaaagagactttgctcagagaggcgggagtgcagaacccaaacagcagaaagagg
aagaagcagtacctgaagatgggccacggagggaccctggacagcgctgccagcggggtc
ttggttgtcggtattgggaacgggacaaaaaagctcagcacgatgttgactggttcaaag
aaatacgtggctgtgggagaactgggaaaagcaacagatactcttgatgccactggaacg
gtgatcatggagaaagagtttgagcacataaccaggctggacatggaggagaagttaaaa
gcttttaccggtgacatcatgcaggttcctccactcttctccgccctgaagaaagacggc
cagcgtctgtctgtgttgttgaagaaaggtcaccaggtggaggccaaacctgcacggccc
gtcaccgtgcacagcctgactctgcaggagttcaaacctcctctcttcactctcgatatc
gaatgcggtggagggttttatgtcagaagcctggtggacgacctggggaaagctctgtcg
tcatgtgctcatgtgaaggagctggtcaggatgaagcagggccagttcaccctgcaggat
cacgtgctgcatgaggagcagtggacgctgcagagcgttgttggggcgctgcagccctgt
ccagaggaggaccagaggacggactctcccagatccccatag
DBGET
integrated database retrieval system
