Xiphophorus hellerii (green swordtail): 116727519
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Entry
116727519 CDS
T07363
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1-like isoform X1
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
116727519
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xhe04040
]
116727519
Ion channels [BR:
xhe04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
116727519
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Gene cluster
GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
Motif
Other DBs
NCBI-GeneID:
116727519
NCBI-ProteinID:
XP_032430883
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Position
10:8366335..8464220
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AA seq
1275 aa
AA seq
DB search
MAKKGEKYSPDSSIHISKMNVVIPFSPDVPCDSSGQRMWWAFLASSMVTFFGGLFIILLW
RTLKYLWTVCCHCNAKKKVVHRITTGDGIKRTDKEDAAASEVGWMTSVKDWAGVMISAQT
LTGRVLVVLVFVLSIGALVIYFIDSSDPIESCQNFYKDFTLQIDMAFNVFFLLYFGLRFI
AANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSWLGLRFLRALRLIQFSEILQFLNILKT
SNSIKLVNLCSIFISTWLTAAGFIHLVENSGDPWENFQNSQTLSYWECVYLLMVTMSTVG
YGDVYAKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGSYSAVNGRKHIVVCG
HITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKRHFTQVEFYQGSVLNPH
DLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAHL
LNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSFIKIEEDTWQKYYL
EGVANEMYTEYLSSAFVGLSFPVICELCYVKLKLLLIAIEYKSDQRESSTLINPGNHVKM
QEGTLGFFIASDAKEVKRALFYCKACHDDITDPKRIKKCGCKKSKTPAYKRMRLACCFDR
RRSKWERSCMPVIVRCNLDSPHRDIPLSALSVNDCSATLRASKNSYNGYIKSIEEDQQTA
LSPKKKQRNGGMRNSPNSSPKITRHDPLLIPGSEQIETIDENIKKYDSTGMFHWCPSKDI
EKVILTRSEAAMTVLSGHVVVCIFGDVKSALIGLRNFVMPLRASNFHYHELKHIVFVGSL
EYLKREWETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSANQNNIDDASLQDKEC
ILASLNIKSMQFDDSIGVLQANSQGFTPPGMDRSSPENSPVHGLVRQTSVTTGANIPIIT
ELAPLAKQGKKVPVISFSQDKSSGTSIQMITELVNDSNVQFLDQDDDDDPDTELYLTQPF
ACGTAFAVSVLDSLMSATYFNDNILTLIRTLVTGGATPELEGLLAEENALRGGYSTPQTL
ANRDRCRVAQLALYDGPFADLGDGGCYGDLFCKALKTYNMLCFGIYRLRDAHLNTQSQCT
KRYVITNPPYAFELVPSDLIFCLMQFDHNAGQSRTSLSHSSHSSHSSSKKSSSVHSIQTT
NRTNRVKSRDSRDKQNATRINRVGQEKTWFTDEPENTHLRTIQINPVNTLAIKPVGHNKS
TSSLIPPIREAEDEC
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaaggagagaaatacagcccggactcctcgatccacatatccaagatgaat
gtggtcatcccgttctcgcccgacgtgccctgtgacagcagcggtcagcggatgtggtgg
gctttcctcgcctcctccatggtcactttcttcggggggctcttcattatcctcctgtgg
aggaccctaaagtacctgtggaccgtgtgctgtcactgtaacgccaagaagaaggtcgta
caccggatcacgacgggcgatggcattaagcgtacagacaaagaggacgctgcggcgagc
gaggtgggctggatgacgtcggtgaaagactgggccggagtcatgatatccgcccagacg
ctgacgggaagagtcctggtagtcctcgtgttcgttctcagcattggagcccttgttata
tacttcatagattcttctgatcccattgaatcctgccagaacttctacaaagacttcacc
ttgcagatcgacatggcattcaacgtgttcttcttgctatacttcggcctgcgttttatt
gctgccaatgacaagctatggttctggctggaggtgaactcggtggtggacttcttcaca
gttcctccggtgttcgtgtcggtgtacctaaacaggagctggctgggtttgaggttttta
agagccttaaggttgatacagttctcagaaattttacagtttttgaatattctaaagaca
agcaactccattaagttggtgaacttgtgttcaatcttcataagcacatggctaactgca
gcaggcttcattcatttggtggaaaactcaggggatccttgggaaaacttccaaaattcc
caaacactttcctactgggaatgtgtctacctactcatggttacgatgtcgactgttggc
tatggagacgtttatgcaaaaaccacccttggccgcttgtttatggtcttctttatcctt
ggtggtttggccatgtttgcaagctacgtccctgaaatcatagagttaataggaaaccgc
aagaaatatggtggttcctatagtgctgttaatgggagaaagcacatcgtggtctgtggt
cacataacgctcgagagtgtgtccaacttcctaaaagacttcctacacaaggacagggat
gatgtcaatgtagaaattgtttttctccataatatttcccctaatcttgagctggaagcc
ttgttcaagcgtcattttacccaagtagaattttaccaggggtctgtcctgaacccacac
gacctagccagagtgaagattgaatcagctgatgcctgcctgatcttagcgaacaaatac
tgtgctgacccagatgccgaagatgcatccaacatcatgagggtaatatctatcaaaaac
taccatccaaagatcagaataataacgcagatgctgcagtaccacaataaggctcacctt
ctgaacatcccaagctggaactggaaggagggggatgatgccatttgccttgctgagctg
aaactcgggttcattgcccagagctgcctagctcaagggctctccaccatgctggccaac
cttttctccatgaggtcctttatcaagattgaggaggacacatggcagaagtattacctt
gaaggagtagccaatgagatgtacacagagtacctgtcaagtgcctttgttgggttgtcc
ttcccagtcatctgcgaactctgctacgtgaagctgaagctactcttgatagctatagag
tacaagtctgatcaaagggaaagcagcactttgatcaaccctggaaaccatgtgaaaatg
caggagggaaccctgggcttcttcattgcaagtgatgccaaagaagtaaaaagggcgctg
ttttactgcaaggcctgtcacgatgatataacagatcccaaaagaataaagaaatgtgga
tgcaagaaatccaagacacccgcctacaagagaatgagactggcatgttgctttgatcgc
aggcgctcaaagtgggagcgctcttgcatgccggttatagtgcgttgtaacttggactcc
cctcatcgggacatcccactctctgctctctctgttaatgattgctcagccactttacgt
gcctctaaaaatagctataatggatatatcaaatcaattgaagaggaccaacagacagct
ctgtcacccaaaaagaagcagcgcaatggaggcatgagaaattctccaaactcctcgccc
aagataacaagacacgacccactcctcatcccaggcagtgagcagattgagactatagat
gagaacataaagaaatacgactccacagggatgtttcactggtgcccgtccaaagatatt
gagaaggtcatcctgacccgcagcgaagcagctatgactgttctgagtggacatgtggtg
gtgtgcatctttggagatgtgaaatcagcgctgattggtctgcgaaactttgtcatgccc
ctgagagcaagcaacttccactaccatgagttgaaacacattgtgtttgtcggttccctt
gaatacctgaagcgcgagtgggaaactctacacaacttccccaaagtatccattctgcct
ggcacaccgttgagcagggctgatctgagggctgtcaacatcaacctctgtgacatgtgt
gtcatcctgtcagccaatcagaacaatattgatgatgcatcactgcaggacaaagagtgc
atcctggcgtcacttaacatcaaatccatgcaatttgacgacagcatcggggttttgcag
gccaattctcaaggcttcacgccaccagggatggaccgatcctctcctgagaacagccca
gtccacggattagtgcggcagacctctgttactactggtgcaaatattcccatcataaca
gagcttgcaccgttagcaaagcaaggcaaaaaagtgcctgtgatttcattcagtcaggat
aaaagcagtgggaccagcatacaaatgataactgagctggttaatgactcgaatgttcag
tttctggaccaagatgatgacgacgatccagacacagaattatacctcacccagcctttt
gcctgtgggacagcatttgcagtcagtgtactggactccttaatgagtgcgacatacttc
aatgataatatcctcaccttgatccggacattggtaacgggtggcgccacgccggagctt
gaggggctgctggccgaggagaatgcattacgtggtggctatagcacaccgcagaccctg
gcaaacagggacaggtgtcgcgtggcacagctggccttgtacgacgggccctttgctgac
cttggggatggtgggtgctatggggacctattctgtaaagccttgaaaacatacaacatg
ttgtgttttggcatctatcgcttaagggatgcacatctaaacacacaaagccagtgtacc
aaacggtacgtcatcaccaatcctccatatgcatttgaactcgtgccctccgacctcatt
ttctgcctgatgcagtttgaccacaatgccggtcagtcacggaccagcctttcccactct
tctcactcctcgcactcttcgagcaaaaagagctcttccgtccactctatccaaactacc
aaccgcaccaaccgagtcaaaagcagggactcacgagacaaacaaaatgcaacaaggatc
aatagagttggccaagaaaagacatggtttacagatgaaccagagaatacccacctgagg
accatacagatcaatcctgtgaatactctcgccatcaaaccagtcggtcacaataaatcc
accagtagcttgatcccacccatcagagaagccgaggatgagtgctga
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