Xiphophorus hellerii (green swordtail): 116727741
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Entry
116727741 CDS
T07363
Symbol
rnf40
Name
(RefSeq) E3 ubiquitin-protein ligase BRE1B isoform X1
KO
K10696
E3 ubiquitin-protein ligase BRE1 [EC:
2.3.2.27
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xhe04121
]
116727741 (rnf40)
Enzymes [BR:
xhe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116727741 (rnf40)
Ubiquitin system [BR:
xhe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
BRE1 proteins
116727741 (rnf40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRE1B
CC_Bre1
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_2
Rab11-FIP3
zf-RING_UBOX
zf-RING_2
zf-RING_5
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
116727741
NCBI-ProteinID:
XP_032431258
LinkDB
All DBs
Position
10:complement(1271648..1292314)
Genome browser
AA seq
1006 aa
AA seq
DB search
MKTGIISEGKMSGAGGGKRPSGGDSPPGPPEKKSKKEEKTTTTLIEPIRIAGVSSTEEMD
MKVLQFKNKKLCERLEQRQAMEDELREKIEKLEKRQATDDTTLLIVNRYWSQLDNNVKVL
RKCIEPDVASAPAPPSAPPPETMAMEENGVALTLPTSAVPPPPLPEAQSEAGPTDQQLQL
EERQEDHQGELQQPAPPAGGDELTPPTEPPSDPKTDASLPPPPPLSENAKGFLAALEQSG
EEELSLHLQDRMLFSKDAIGHLVRVFDRLHARIDDMCTAIQAAAGEEGGLLEDNVRLRDL
TTLLQGRHHKMSMEYNEWVDKVTSAETKVSEMETTVEDLQWDIEKLRNREQKLNKHLAEA
MEQLKSGYSSTGSSGGLAGGQITLNIQKFESLNAELEHNQELANSRMAELEKLQLELQEA
VRESEKLKMDLRNIPEEVVKETSEYKCMQSQFSLLYNESLGVKTQLDEARALLLTTKNAH
LRQIEHMESDELSLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPINREM
RHLISSLQNHNLQLKGDVQRYKRKLRETQMEINKLRSQSGDAGVLILEETTSDGMDVKKE
EEEDQEEEEERRKELERQRAREREREREREAERERERERERERQRSDELKRKDSDTLKML
RVELKKAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKSKAEVEDLRMRVRELEEREK
KESKKLADEDALRKIRVAEETIEHLQKKLAATKQEEEALLSEMDVTGQAFEDMQEQNSRL
LQQLREKDDANFKLMSERIKSNQIYKLLKEEKEELADQVLTFKTQVDAQLLVVQKLEEKE
GVLQTTLAALEKELAVRTQALELNKRKAVEAAQLAEDLKVQLEHTQAKLKEIQVSVAENR
TARERESSNLKRAQEDLSRLRRKLEKQKKVEVYSDADEILQEEINQYKAKLRCPCCNTRD
KETVLTKCFHVFCYECLKMRYDTRQRKCPKCNCAFGANDFHRIYIT
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacggggattataagtgaaggaaagatgtcgggtgccgggggagggaagcggccc
tcgggaggggacagtcctcctggcccacctgagaaaaagagcaagaaagaggagaaaacc
accacgacgcttattgagcccatccgcatagcgggagtctcctccacggaggaaatggac
atgaaggtgctgcagtttaagaacaagaagctgtgcgagcgactggagcagaggcaggcg
atggaggacgagttacgagagaaaatagaaaagctggagaagaggcaggctacggacgac
acgaccctgctgattgtcaaccggtactggtctcagctggacaataacgtcaaagttttg
cgtaaatgcatcgagccagatgtggcgtctgcccccgccccgccctcggccccgcctccg
gaaaccatggcgatggaggaaaatggcgtcgctctgaccctgccgacctcagcggttcct
ccgccgccgctgccagaggcccagagcgaagccggcccgacggaccagcagctccagctg
gaggagcggcaggaagatcaccagggcgagctgcagcagccggcgccccctgctggagga
gacgagttgacgccaccgactgagccgccgtctgatccaaaaacagatgcgtcgctgcct
cctcctcctccgctcagcgagaatgcgaagggcttcctggccgcgctggagcagagcggc
gaggaggagctgagcttacacctgcaggaccgcatgctgttcagcaaggacgccatcggc
cacctggtccgcgtcttcgaccggctgcacgcgcgcattgatgacatgtgcacggctatc
caggctgcagcaggcgaggagggcggtctgctggaggacaacgtccggctgagggacctg
accacgctgctgcagggccgacaccacaagatgtccatggagtacaatgagtgggtggac
aaagtgacgagtgcagaaaccaaagtgtctgagatggagacaacggtggaggatctgcag
tgggacatcgagaagcttcgcaaccgggagcagaagctcaacaaacacctggcggaggcc
atggagcagcttaagtctggctacagcagcaccggcagctcggggggattagctggaggt
cagataacgctcaacatccagaagtttgagagcctgaatgcagagctggagcacaaccag
gagctggcgaacagccgcatggcggagctggagaagctgcagctggagctgcaggaggct
gtgagggagagcgagaagctcaagatggacctgcgaaatattccagaagaagtcgtaaaa
gaaacgtcggaatataaatgtatgcagtctcagttctcgctgctctacaacgaatctctg
ggagttaaaactcagctggacgaggccagagccctgctgctcaccaccaagaacgctcac
ctccggcagatcgagcacatggagagtgacgagctttccctgcagaagaagctgcggacc
gaggtcatccagctggaggacacgctggcgcaggtccgcaaggagtacgagatgctgcgc
atcgagttcgagcagaacctggcagccaatgagcaagcagggccaatcaaccgggagatg
cgacatctgatcagcagccttcagaaccacaacctgcagctgaagggcgacgtgcagcgc
tacaagaggaagctgcgggaaacgcagatggagatcaataagctgcgctcgcagagcgga
gacgctggcgttctgatcctggaggagacgacgagcgacggcatggacgttaaaaaggag
gaagaagaagaccaggaggaagaggaggagaggaggaaggagctggagagacagcgggcg
agggagagggagagagaaagagagagagaggccgagcgagagcgggagagggagagagag
agagagaggcagcgcagcgacgagctgaagaggaaagactcagatacactgaagatgctc
cgagtcgaactcaagaaagctcaggagtcgcagaaagagatgaagctcctgttagacatg
tacaagtcggctccaaaggagcagagagacaaagtgcagctaatggccgccgagcgcaag
tcaaaagcagaggtggaagacctgaggatgcgagttcgagagctggaggagagggagaag
aaggagagcaagaagctggctgatgaagacgccctgaggaagatccgcgttgcagaggaa
accatcgagcatctgcagaagaaactggcagccaccaagcaggaggaggaggcgctgctg
agcgagatggacgtaacgggccaggccttcgaagacatgcaggagcagaacagcaggctg
ctgcagcagctgcgcgagaaagacgacgccaacttcaagctgatgagcgaacgcatcaaa
tccaaccagatctacaagctgctgaaggaggagaaggaggagctggcggaccaggtcctc
accttcaaaacgcaggtggatgcccagctgctggtggtgcagaagctggaggagaaggag
ggagtcctgcagacgactctggctgccctggagaaggagctggcggtccggactcaggcc
ctggagctcaacaagaggaaggcggtggaggctgcgcagctggcggaggacctgaaggtg
cagctggagcacacgcaggccaagctgaaggagatccaggtctctgtggcggagaaccgc
accgcccgcgagagggagagcagcaacctgaaacgggcgcaggaggatctgtcccggctg
aggaggaagctggagaagcagaagaaggtggaggtttactctgacgcagacgagatcctg
caggaggagatcaaccaatacaaggccaagctgcgctgcccctgctgcaacactcgggac
aaggagaccgtcctcaccaagtgtttccacgtcttctgctacgagtgtctgaagatgcgc
tacgacacccggcagaggaaatgccccaagtgcaactgcgccttcggagccaacgacttc
caccgcatctacatcacctga
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integrated database retrieval system
