Xiphophorus hellerii (green swordtail): 116727945
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Entry
116727945 CDS
T07363
Name
(RefSeq) embryonic polyadenylate-binding protein B-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03015
mRNA surveillance pathway
xhe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116727945
09123 Folding, sorting and degradation
03018 RNA degradation
116727945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116727945
03041 Spliceosome [BR:
xhe03041
]
116727945
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
116727945
mRNA cycle factors
Stress granule specific factors
116727945
Spliceosome [BR:
xhe03041
]
Complex C
Other components
Complex C specific factors
116727945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_occluded
RRM_3
RBD_RDR6
YflT
Motif
Other DBs
NCBI-GeneID:
116727945
NCBI-ProteinID:
XP_032431930
LinkDB
All DBs
Position
1:complement(20965090..20977629)
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AA seq
651 aa
AA seq
DB search
MNSSGPAYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQ
QPADAECALDTMNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFS
AFGNILSCKVVCDEKGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVQKTGKKESGIVN
PKDRFLWEKCQFSQLRSANRFVGHFKSRKEREVEFGSKAMKFTNVYIKNFGDDFTDENLK
EVFSAFGRTLSVRVMKDEKGQSRGFGFVNYAHHEDAQKAVDEMNGKELNGKTIYVGRAQK
RMERQGELKRKFDQIKQDRIQRYQGVNLYVKNLDDSINDDRLRKEFSPYGTITSAKVMTE
GGQSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRREERKAILTNKYMQRLAT
LRTMSNPIIDSYPQSGYYMTVPQPPTRSFYNHSAVSNLRPVPRWMGQPPRAQGPYSAQYI
GSPLPRRGSPTITTVRQASTQAPRIITSSQKTNNIGTQTGGVPRGNQYKYSSGVRNPLHV
VTVPAPMTRPQVAPVPVAEPAAHIPGPESLTSSMLAAAPLMDQKQLLGERLYPLIHALHP
NLAGKITGMLLEIDNSELLLMLESPESLNSKVEEAIAVLQAHKAKECSPKK
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcagtggtccagcgtatcctctagcctctttgtatgttggggacctgcaccct
gatgttacagaagccatgctatatcagaagttttctcctgctggacccatcatgtcgatc
cgcgtgtgccgggacatcatcacccgcagatccctaggatacgcctacataaacttccag
cagccagctgacgcggagtgtgccctagatacgatgaactatgatgtcattaagggtcga
cccattcggataatgtggtctcagcgtgacccaggtctcaggaagtccggtgtgggaaac
atctttatcaagaacatggatgagtccattgacaacaaggcgctgtatgataccttctct
gcctttggcaatattttatcctgcaaggttgtctgtgatgagaaaggatcaaaaggctat
ggctttgttcactttgagactcaggaggctgcaaatcgggccattgaaacaatgaatggg
atgcttctgaatgacaggaaagttcaaaagacaggtaaaaaggaatctggcattgtcaat
ccaaaggaccgtttcctgtgggaaaaatgtcagttctcccagcttaggtcagcaaatagg
tttgttggccacttcaagtctcgcaaggaaagggaagttgagtttggctccaaagctatg
aagtttaccaatgtctacatcaagaactttggagacgacttcactgacgagaacctgaag
gaggttttttctgcttttgggaggactctcagtgtgcgggtgatgaaggatgagaaaggc
caatcccgaggatttgggtttgtcaactatgctcaccatgaggatgctcagaaggctgtg
gatgaaatgaatggaaaggagcttaatgggaagaccatttacgtaggtcgcgctcagaag
cgtatggagcgccagggggagctgaagcgcaagtttgaccagatcaaacaggatcgcatc
caacgctatcagggggtgaatctgtatgtgaagaacttggatgatagcataaatgatgat
agactccggaaggaattttctccttatggtacaatcacaagtgctaaggtgatgactgaa
ggtggccaaagcaagggcttcggcttcgtctgcttctcgtctccagaggaagcaaccaaa
gcagtgactgaaatgaacgggagaattgttgcgaccaagccgctgtatgttgcgctggcg
caaaggagggaggagcggaaagctattctaactaacaagtacatgcagagactcgctacc
ctgaggaccatgagcaaccccatcatcgactcgtacccccagtcgggatactacatgacc
gtaccacagcctcccactcgctctttctacaaccacagtgcagtcagcaacctgagacca
gtccctcgttggatggggcagccgcccagagcccagggaccttactcagcccagtatata
gggagtcctcttcctcgccgcggttcaccaaccatcactacagtccgacaagcttccact
caggctccacgcatcataacctcctcacaaaagacgaataacatagggacgcagactgga
ggagtgcccagaggaaatcagtacaagtattcgtctggagtgaggaaccctctgcatgtc
gttacggttcctgctcccatgacgagaccacaggttgctcctgtgcctgtggctgaacca
gcagctcacattccaggcccggagtctctcacctcttcaatgctggctgcagctccgctc
atggatcagaaacaactccttggggagcgactgtatccactgattcatgcccttcaccca
aacctggcaggaaagatcacagggatgctgctagagatcgacaattcagagctgctgctc
atgctggaatcaccggagtccctgaactctaaggtggaagaggcaatcgctgtcttgcag
gctcacaaggcaaaagagtgttctccaaaaaagtga
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