Xiphophorus hellerii (green swordtail): 116728223
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Entry
116728223 CDS
T07363
Symbol
exosc8
Name
(RefSeq) exosome complex component RRP43
KO
K12586
exosome complex component RRP43
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116728223 (exosc8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116728223 (exosc8)
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
116728223 (exosc8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
116728223
NCBI-ProteinID:
XP_032432038
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Position
11:complement(22892663..22897166)
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AA seq
277 aa
AA seq
DB search
MATGFKIAEPLEYHRSFLKENCRPDGRELSEFRTTTLNIGSISTADGSALVKIGNTTIIC
GIKAELANPTADAPGKGYIVPNVDLPPLCSSRFRPGPPGEQAQAASQFIADVIESSEVIK
AEDLCVDRGKLCWVLYCDIMCLDYDGNILDACIIALLAALKNTQLPEVTVNKETCSPEVN
LEKRQRLHIHKHPASASFCVFDDSILIVDPTAEEESLSTAHLTVVTDEEGRLCSVHKPGG
SSLSREKLQDCINRATARQREIHKLIDKVLDSVKTAK
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgggttcaagattgcggaacctctggagtatcacagaagctttttgaaagaa
aactgtcgacctgatggacgggagctgtctgaattcagaaccacaacactgaacattgga
tccatatccacagcagatggttcggcattggtgaagataggaaacacaacgattatctgc
ggaatcaaagcggagctggctaaccccacagcagatgcccctggtaaaggttacattgtg
cccaacgtggatttgcctcctctgtgttcgtcccgctttcggccgggtccaccaggagaa
caggcccaggctgccagccagtttattgctgacgttattgaaagctctgaggtgatcaaa
gcagaggacttatgcgtcgacagaggaaagctttgttgggtgctctactgtgacattatg
tgtctcgactatgacgggaacattctggacgcttgtattatcgccctgctggctgccctg
aagaacacacagctcccagaagtcaccgtgaacaaagagacatgttcaccagaagtgaat
ttggaaaagcgacaaaggcttcatattcacaaacatcccgccagtgcttccttttgcgtc
tttgatgactctatcctgattgtagaccccacagctgaggaggagagtctgtcaactgct
cacctcactgtggtcacagatgaggagggtcgtctctgttctgtacataaaccaggtgga
tcgtcactttcaagagagaagctgcaggactgcatcaaccgagcaacagcccggcagaga
gagatccacaaactcatcgacaaggttctagacagtgtgaagacggcaaaataa
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