Xiphophorus hellerii (green swordtail): 116728392
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Entry
116728392 CDS
T07363
Symbol
zc3h12b
Name
(RefSeq) probable ribonuclease ZC3H12B
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116728392 (zc3h12b)
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
116728392 (zc3h12b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
zf-CCCH_4
UBA_N4BP1_C
Motif
Other DBs
NCBI-GeneID:
116728392
NCBI-ProteinID:
XP_032432364
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Position
11:complement(14738878..14755298)
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AA seq
856 aa
AA seq
DB search
MTAWSMVEKLKMEKRPCREQNIDSREAEHATDESEDGSSSESESEEQQWRRQQHPHRPQL
GNNSCRKREPLAVTKPHRQLCRSPCLDRPSFSQSSTLQDFRDDDSGGGSVGATPGLKPAS
GREYQTKMEFALKLGYSGDQVETVLNKLGATALINDILAELVRLGNKAEHEAQPCSATVP
STSRPPCVKETVSPEVSVEEESVDTYDNLRPIVIDGSNVAMSHGNKEVFSCRGIQLAVEW
FREKLHKDITVFVPAWRKEQSRPDALITDQEILRKLEKEKILVFTPSRRVQGRRVVCYDD
RFIVKLAYDSDGIIVSNDNYRDLQNEKPEWKKFIEERLLMYSFVNDKFMPPDDPLGRHGP
SLENFLRKRPVVPEHKKQPCPYGKKCTYGHKCKYYHPERVNQPQRSVADELRAFAKLSAV
KTMSEGALAKCGTGPAAVKGDVGSEAKRVAPKRQSDPSIRSVACEPIEALSVARKSETNS
VPSLVSALSVPTMQPAKSHAAGALNTRSASSPVPGSLQFAHNSLEHMSSIQYPPILVTNS
HGASVTYSEQFPKYDSVSDHGYYSLHSDFSNMSMSSMHNVDSFCSMEHEHVYQRTPSHCP
ESCLSHSNSDSFSSYGELYPSSVDSSLEESIKGQQQAPTQARMQAFSHGFRHDVLTRVQS
YGQEEPKQGPRKQSGAHLAPHIQHATVGARSSCPGDYPLAQNVLPPLSSQPTRSLGMTRM
DSISDSRLYDSNPMRQRRPPLCREQHASWDPLPCGNESYGYHSYPLSNSLMPCCERVMVR
SMPDKMEQIWNSPWENPSAAEHQERYVIPDHQYQTYRNLCNIFPAYIVHSVMEKNPHLTD
PQQLAAVIVTKLRSCH
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgacagcatggtccatggtggagaagctcaaaatggaaaaacgcccatgccgggagcag
aacattgactcaagggaggccgagcatgccacggacgagtccgaggacggaagcagctcc
gagagcgagtcggaggagcagcagtggcggcggcagcagcacccccacaggcctcagctg
ggaaacaacagctgcaggaagagggagcccctcgccgtcaccaaaccccaccgccagctc
tgccgctctccatgcctcgaccggcccagcttttcccaaagtagcaccctgcaagacttt
cgcgacgatgactccggcggcggcagtgttggcgccacaccaggcctcaagcccgccagc
ggaagggagtaccaaaccaagatggagtttgctttgaagctgggctactccggagaccag
gtggagacggtgctcaacaagttgggggccacggcgctcatcaacgacattctcgccgag
ttggtccggctcgggaataaagcggaacacgaagctcaaccctgcagtgccaccgtcccg
tcaacgtcacggcccccctgtgtgaaagaaactgtcagtccggaagtttcagtagaagaa
gaatccgttgatacgtatgataaccttcgacccatcgtcattgatgggtctaacgtggcg
atgagccacgggaacaaggaggttttctcttgtcgcggtatccagctggcggtcgagtgg
tttcgagagaaattacacaaagacatcactgtgtttgtccccgcctggaggaaggagcag
tcgagacccgacgccctcatcacagatcaagaaatcttgcgcaaactggagaaagagaag
atcctggtttttaccccgtctcgaagagtccagggcaggagggtggtgtgctacgatgat
cgcttcatagtgaagctggcttacgattctgatggaattattgtgtcaaatgacaactac
agagacttgcaaaacgagaaaccagagtggaaaaaatttatagaagagcgcctcctgatg
tattcatttgtcaatgacaagtttatgccacctgatgatccgttgggaagacatgggccg
agcttagaaaacttcctccgcaagaggcctgtggttccagagcacaaaaagcagccttgc
ccttatgggaaaaagtgcacatatggtcataagtgcaaatactaccatccggagcgcgtg
aaccaaccacagcgatccgtggccgacgaactgcgagccttcgccaaactgtccgcggta
aaaacaatgagcgaaggggctttggctaaatgtggtacaggtccagccgccgttaagggg
gacgtcggctctgaagcgaaacgcgtggcgcctaaacgccagtccgaccccagcatccgc
tcggtggcctgcgaacccatagaggcgctctccgtcgcccggaagtccgagacgaattca
gtgccttccctcgtgtctgctctcagcgtgcccaccatgcagcccgccaagagccacgca
gccggggcattaaacacccgctcagccagcagccccgttccaggctctctgcagtttgca
cacaactctctagagcacatgtccagcatacagtacccccccattttagtcaccaacagc
cacggcgcctccgtgacgtacagcgaacagttccccaagtacgactcggtcagcgaccac
ggatactactcgctccacagcgatttttccaacatgagcatgagcagcatgcacaacgtg
gacagtttctgtagcatggagcacgagcatgtgtaccagagaacccccagccactgcccc
gagtcctgcctcagccactccaacagcgactcattctcctcctatggggagctgtacccg
agctctgtggacagcagcctggaggagagcatcaaggggcagcagcaggctccaacgcag
gcgaggatgcaggccttctcccacgggtttcgccacgacgttctcaccagagtccagagt
tacggacaggaggagcctaagcaaggtcctcgcaagcagtccggggcgcacctcgcacct
cacatccagcacgccacggtgggagcccgctccagctgtcctggagactacccgctcgcc
cagaacgtcctgccaccattgtcctcgcagccaacgcggtctctagggatgacacgcatg
gacagcatatcggactctcggctgtacgacagcaacccgatgaggcagaggcggccgccg
ctgtgccgcgagcagcatgcgagctgggacccgctgccctgcggcaacgagtcctacgga
tatcactcgtatccgctcagtaacagcctgatgccgtgttgcgagcgggtgatggtccgc
agcatgccagacaaaatggagcaaatctggaactcgccgtgggagaacccgtccgcggcc
gagcaccaagagcggtacgtcattccagatcaccagtaccaaacatacaggaacctctgc
aacatcttccccgcgtacatcgtccactcggtcatggagaagaaccctcatttaacagat
ccacagcagctcgcagctgtgattgtcacgaaactgaggtcatgccactga
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