Xiphophorus hellerii (green swordtail): 116728412
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Entry
116728412 CDS
T07363
Symbol
lig3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
116728412 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116728412 (lig3)
Enzymes [BR:
xhe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
116728412 (lig3)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
116728412 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
RNA_ligase
BRCT_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
116728412
NCBI-ProteinID:
XP_032432405
LinkDB
All DBs
Position
11:complement(4475852..4492942)
Genome browser
AA seq
1001 aa
AA seq
DB search
MQRHLIFLVQKTVCVGRQPFGTLIRFKQASTLCRTFLISPSSDQRKSLASHKHHLQKRHA
PWTSIRRCFSEWPDMSEQRFLVEYAKRGTAGCKKCKDKIQKGVVRIGKVVPNPFSESAGE
MKEWYHVKCIFEKLERARATTKKIEDLTELEGWEELQEEDKELINKHVSDLMAKVNASPK
KKVQAKLNTTGQLMAPPADPSVNAPRKFSGFTAAKAGSSGSSSSSSSPGLSTSPAAKAGS
SSALSTQLCDAQHKDCLFREFRKLCAMVAENNSYNSKTQIIEKFLKKGTGGDKFHGDLYL
TVKLLLPGVVKSVYNLNDKQIVKLFSRIFRSNQEDMVRDLEQGDVSETVRIFFEESKCFP
PAAKSLLTIQEVDAFLMRLAQLTKEDEQQSELESIAKKCTSNDLKCIIRLIKHDLKMSAG
AKHVLDAVDPNAYDAFKASRNLGDVIERVLRNQQDATSGSGPRKLLTVEASLMTPVQPML
AEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKNGNTFSYFSRSLKPVLPHKVAHFKEYI
PQAFPGGHSMILDAEVLLIDTKTSKPLPFGTLGVHKKAAFQDAKVGLFVFDCIYFNGVSL
MERPLCERRKFLDDNMVEVPNRILFSEMKHVTRAGDLAEMITRVIREGLEGLVLKDVKGS
YEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPDSKKWCT
VTKCSGGYDDAMLARLQKELDVIKISKEPGKIPSWLKIVKNYYPDFIIRDPEQAPVWEIT
GAEFSKSEMHTADGISIRFPRMTRIRDDKDWKTATNLHQLRELFRISKENCDFKVTAGPS
TSDDKGSSGGDSGGNSPSSSSSRSAPAKKTSSSTPTKPKAVKSKPRTPTSEASSAKKVKK
SEESFQSNGQNKASSQLLQPRNDKLLLDIFSGVKLFLPVSVQDFDRLRRYFVAYDGDLVP
DYDSASATHTLGDPEGGSRAQRVSPSWIWECIRKRRVVPPC
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atgcagagacatcttattttcttggtacagaagactgtctgtgtgggccgacaacctttt
ggtacactaatccgatttaaacaagcttcaacgttgtgcagaacatttctgatttcacct
agctctgatcagcgaaaatccttagcatcccataaacaccaccttcaaaaaagacacgct
ccctggacctcaattcgccggtgcttttctgagtggccagatatgtcggaacaacgcttc
ctggtggaatacgccaaacgtggcacggcggggtgcaagaaatgcaaggacaagatccag
aagggcgtcgtgcgcatagggaaagtcgtgccaaaccctttcagcgagtctgctggcgag
atgaaagagtggtatcacgtgaagtgcatatttgagaagctggagagggcaagagccacg
acgaagaagatcgaggacctgacggagctggagggctgggaggagctgcaggaggaggac
aaagagctcattaataaacacgtttcagacctgatggccaaagtcaatgcaagtcctaaa
aagaaggtccaggccaagttgaacaccactggtcagcttatggcgccccctgctgaccct
tctgtcaatgctccgaggaagttttctggcttcacagctgcgaaggctggcagctccggc
agctccagcagctccagcagccccggactgtcgacgtccccggcggccaaagccggctcc
agcagcgccctgtccactcagctctgcgacgcccagcacaaagactgcctcttcagggag
tttcgcaaactctgcgcaatggtggctgaaaacaacagctacaacagcaagacacagatt
atagagaagttcctgaagaagggcacaggaggagataaatttcacggagatctttacctg
acggtgaagctgctgctgccaggcgtggttaaaagtgtttacaacctgaacgataagcag
atagtaaaactcttcagccgcatattcaggtccaaccaggaggacatggtgcgagatctg
gagcagggcgacgtgtcagaaactgtgaggattttcttcgaggagagcaaatgttttcct
cccgctgccaagagcctcctaacaatccaggaagtagatgcgttcctgatgcgcctcgct
cagctcacaaaggaggacgagcagcagagcgagctggagagcatcgccaaaaaatgcacc
agcaacgacctgaaatgcatcatcaggctaattaagcacgacttgaagatgagcgctggc
gccaaacacgtgttggacgcggtagatccaaacgcgtacgacgccttcaaggcctcccgt
aaccttggcgacgtgatcgagagggttctgaggaaccagcaggatgccaccagcggctct
ggacccaggaagctcctgaccgtggaggcgtcgctcatgacgcccgtccagccgatgctg
gccgaggcgtgtaaatccatcgagtacgccatgaagaaatgtcccaacgggatgtactcg
gagataaaatacgacggcgagcgcgttcaggtccacaagaacggaaacaccttcagctac
ttcagccgcagcctcaagccggtgctgccccacaaggtggcccatttcaaagagtacatc
cctcaggctttccctggcggccacagcatgattctggacgctgaagtcctgctgattgac
acaaagaccagcaaaccgctgccgtttggcactctgggtgttcacaagaaagctgccttt
caagacgccaaagtgggtctgtttgtgttcgactgcatttacttcaacggcgtgagtctg
atggaaaggccgctctgcgaacgcaggaagttcctggacgacaacatggtggaagtccca
aacaggatcctcttctcagagatgaagcacgtcacaagggcaggagacctggcggagatg
ataactcgcgtcatcagagaaggactggaaggcctggtgctgaaagacgtaaagggaagc
tatgagccggggaagcgacactggctgaaggtgaagaaggattatttgaacgagggagcg
atggccgacacagcagacctggtggtgctcggtgccttctacggaaaaggatcaaacggg
ggcatcatgtctagctttctgatgggctgctacgacccggactcgaagaagtggtgcacg
gtgaccaagtgctccggaggatacgatgacgccatgctggcccgactccagaaggagctg
gatgtgatcaaaatcagcaaggaacccgggaaaattcccagctggttgaaaattgtcaag
aactattatcctgatttcattatccgtgaccctgagcaagcgccagtctgggagatcacc
ggcgcagagttttccaaatcagaaatgcacacggccgacggcatctccatccgcttcccc
cgcatgacgcgaatccgcgacgacaaggactggaagacggccaccaacctgcaccagctc
agggagctgtttcgcatttcgaaggagaactgcgactttaaagtgacggcgggtccttcc
acgtccgacgacaaaggctcatcgggaggagacagcgggggaaactcgccgtcgtcctca
tccagcaggagcgctccggccaaaaagacgagtagcagcacccccaccaaaccaaaggct
gtaaaatcaaaaccccgcactcccacctctgaggcctccagcgccaagaaggtgaagaag
agcgaggagagctttcagagcaacggacaaaacaaagcgtcttcccagctgctgcagccg
aggaacgacaagttgctgctggacatcttcagcggggtcaagctcttcctccccgtctcc
gttcaggacttcgacagactgcggcggtactttgtggcgtacgacggggacctggtgccg
gattacgactccgcctcggctacacacacgctgggcgacccggaggggggcagccgggcc
cagagggtctctcccagctggatctgggaatgcatccgaaagcggcgcgtcgttcctccc
tgctga
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