Xiphophorus hellerii (green swordtail): 116728479
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Entry
116728479 CDS
T07363
Symbol
dcaf1
Name
(RefSeq) DDB1- and CUL4-associated factor 1
KO
K11789
DDB1- and CUL4-associated factor 1 [EC:
2.7.11.1
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
xhe01001
]
116728479 (dcaf1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xhe04121
]
116728479 (dcaf1)
Enzymes [BR:
xhe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
116728479 (dcaf1)
Protein kinases [BR:
xhe01001
]
Serine/threonine kinases: Other
Other
116728479 (dcaf1)
Ubiquitin system [BR:
xhe04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
116728479 (dcaf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
WD40
ANAPC4_WD40
Beta-prop_WDR19_1st
LisH
Beta-prop_WDR90_POC16_2nd
WD40_WDHD1_1st
Motif
Other DBs
NCBI-GeneID:
116728479
NCBI-ProteinID:
XP_032432517
LinkDB
All DBs
Position
1:complement(20386502..20402533)
Genome browser
AA seq
1564 aa
AA seq
DB search
MASASASVDSKAELTALLEQWEREQQGNTQELVNILTKISELVEKETEEYHKADPDPFDD
RHPGRADPEGMLGHLLKILFKNDEFMNTLVNSYVMTSREFSLNAAACRLLQNIMPGLETA
VVFQEKEGIVERLFKWAQEAEQPLRIYATGLLAGAMENQDIAANYREENSVLVPLMLHRL
RELQDKDAENKREIKRPSPRKILSEPLLPLDEEAVDGGFEDKPFSPCKNSDEKEAVGPQG
DAEVPFSSAEPENELSFRFSSPHRTSSRASSAVKTMMKPMSAPGSLAHPGMSDGSGYLRR
RMERDNARTSKQKLNFSLPEPERNLSELSNSSWSEMSPWVIGNNYHLDPLTPEIEQRLIL
QYLTPLGEYQELLAVFMQMGARELLMHYMDLKQTNDVQLTFEALKYLASLLLHKKFAAEF
VAHGGVQKLLEIPRPSMAATGVSLCLYYLAYNQDAMERVCMLPHSVLSDVVGYTLWLLEC
SHASGCCHATMFFSISFSFRAVLELFDKQDGLRRLVNLISTLEILNPEDQGALLSDDEIF
SSRQRAKHTCMALRRYFEAHLAIKVEQVKQSLQRTEGGAPIHSQPYYKAVSYSREQVVEM
MEFLIEYGPLRLYWEPAEVFHKLSCVQLLLQLISIACDWRTYYGRSDTVRYALDILSILT
VVPKTQLLLSEPVAVLDEGGSTVSTVGMSIVLAVAEGEVFVNDAEIQKSALQVVINCVCA
PDKRMSSIGKFIAGTPRRRLPQQTKANESVLTKMWNVVQSNNGIKVLLSLLTVKMPITDA
DQIRALACKALVGLSRSSSVRQIISKLPLFSSGHIQQLMKEPVLQDKRSEHVKFCKFAAE
LMERISGKPLLIGTDVSLAWLQRANVVAQSKITFPEKELLLLIRNHLVAKGLHDTANTLT
KEADLPMTCLSHSSHCSHSASSFPAVAPPPAASPVTTLPRTPRLANGVGSRHGNHISHSS
TTPSNHPQARPSTSQSAGPPSSAIPSTSAPHCSNGSPLIGRIVFSRERQTPCGAINCKKN
RVLRQKSDHGAFSQSPAMKKQFDRHLPSPPALDSIITEYLREQHARCKNPVATCPPFSLF
TPHQCPEPKQRRQAPINFTSRHSRRVIYPKYGGVDGGCFDRHLIFSRFRPISVFREADED
ESGFTCCAFSARERFLMLGTCTGQLKLYNVFTGQEEASYSCHSSAITHLEPSRDGSLLLT
SASWSYPLSALWGMKSVFIMKHSFLGDHYVEFSKLSQDRVIGTKEHVARIYDVQTGQVTL
TLNNPDLANNYKRNCATFNPTDDLVLNDGVLWDIRMAQAIHKFDKFNMNISGVFHPNGQE
VIINTEIWDLRTFHLLHTVPALDQCRIVFNNSGTVIYGAMLQADDEDDMMEMQMKSPFGS
SFRTFNATDYKPIATIDVKKNIFDLCTDTKDCYLAVIENQDSVNTDTVCRLYEVGRQRLA
EEEEEDEEDQEDDDQEEDDDDDDDSDDDVDTDPLIAELENDNGGEDEDDDDGNDEFSPSD
EEVARLLEDDGDGGDDDDEDGDDDDDDDDNDDDDDSDNDVDLDGDNDSSDNSDLEDDIIL
SLNE
NT seq
4695 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcagcatctgcctccgtggactcaaaggcagagctgactgctctgctggaacag
tgggagagggagcagcaaggcaacacacaggagctggtcaacatcctcacaaaaatctct
gagcttgttgaaaaggagacagaagagtaccacaaagcggaccctgacccttttgatgat
cggcatcctgggagagctgatccagaaggcatgttggggcatcttctgaagatcttgttc
aaaaatgatgaattcatgaatacattggtgaacagctatgtgatgaccagcagagaattc
tctctaaatgcagcagcttgtcgcctgctgcagaacatcatgcctgggctggagacagct
gtggtctttcaagaaaaagagggcatcgttgaaagactttttaagtgggctcaggaggct
gaacagcctctacgaatctatgccacaggcctgttggcgggcgccatggagaatcaggac
attgctgccaactacagagaggagaactctgttttggtgcctttgatgctgcacaggttg
cgtgagcttcaggataaggatgctgagaacaaacgggaaatcaaacgacctagccccagg
aagattctcagtgagcctctgctgcctttagatgaggaggctgttgatggaggctttgaa
gacaagcccttctctccatgtaaaaattcagacgaaaaggaagcagtggggccgcaagga
gacgccgaagttcccttctcaagcgccgagcctgaaaacgaattgtcgttccgtttcagc
tcgcctcacaggacgagtagccgtgccagctcagctgttaaaaccatgatgaagcccatg
tctgccccgggttcactggcacacccaggcatgtctgatggcagcggctacctgcggagg
aggatggagagagacaatgccagaacctcaaaacagaagctgaatttctctctgccggaa
ccagaaaggaacttaagcgagctttccaacagcagctggtcagagatgagtccctgggtt
attggcaacaactaccatctggaccctttgaccccagagattgagcagaggctcatcctg
cagtatctcacacctctgggagagtatcaggagcttctggcagtgtttatgcagatggga
gcccgtgagctcctcatgcactatatggatctaaagcagaccaatgatgtccagctgacc
tttgaggctctgaagtatttggcttctctgctattgcacaagaagttcgctgcagagttt
gttgctcatggaggcgttcagaaattgctggaaatcccaagaccttcgatggctgctaca
ggagtgtcactgtgcctctattacctcgcctataaccaggatgcaatggaaagggtgtgc
atgttgccccactccgtcttgtcagatgtggttggttacacgctgtggctgttggagtgc
tcgcatgcatcaggctgctgccacgcaaccatgttcttctccatctccttttcgttccgg
gccgtcctcgagcttttcgacaagcaggatggacttagacggctcgtcaatctgatcagc
acactggagatcctgaatccagaggaccagggagcgctgctgagcgatgatgagattttc
tccagcaggcagagagccaagcacacctgcatggctctgcgcaggtacttcgaggcccat
ctggcaatcaaggtggagcaggtgaagcagtctctgcagcgcacagagggaggtgccccc
attcactcacaaccatattacaaggcggtcagctacagccgtgaacaggtggtggaaatg
atggagtttctgatcgaatacggtccactcagactatactgggaaccagcagaggtcttt
cacaagctgtcttgtgtccagcttctcctgcagctcatttctattgcttgtgactggagg
acctactacggcaggagtgatacagtacgatatgccctcgacatcctgagtatcctcaca
gtggttccaaagacgcagctgttgttgtctgaacctgttgcagtgctggatgagggagga
tccactgtttctactgttggtatgagtatagtcctggctgtggcggagggagaggtcttt
gtgaacgatgcagagatccagaagtcggctctccaggttgtcatcaactgtgtgtgtgcg
ccagacaaacgcatgtccagcattggcaaatttattgcggggactccccgtcgccgcctg
ccgcagcagacgaaggccaacgagagcgtgctcaccaagatgtggaatgttgtacagtcc
aacaacgggatcaaggtgctcctgtcccttctgactgtcaagatgcccattacagatgcc
gatcagatccgagctcttgcctgcaaggctctggtgggtttgtctcgctccagctctgtc
agacaaatcatcagcaagttgcctttgttcagcagcggacacatccagcagctcatgaaa
gagcctgttctccaggacaaacgcagcgaacacgtcaagttctgtaagtttgcagcagag
ctgatggaaaggatctctgggaagccgttgttgatcggtacggacgtgtctctggcgtgg
ctgcagagggccaacgtggttgctcagtccaagatcaccttccccgagaaggagttgctg
cttctcatacgaaaccaccttgtggccaaaggcctacacgacacagcaaacacactcacc
aaagaggcagatctgcccatgacatgcctttcacattcatctcactgttcacattcagcc
tcctctttccccgctgttgctcctcctcctgctgcctcccccgttactacgctcccccgc
accccacggttggccaacggtgtgggctcacgacacggaaaccatatctcacactcatcc
accacgccatccaaccatccacaagcacgcccctccacatcacagtcggctggaccgcct
tctagcgccataccatcgacgtctgccccacactgtagcaacggctcgccgttgatcggc
cgcatcgttttctctcgtgaacgacagacgccgtgcggagccataaactgcaaaaagaac
cgagtgcttcgacagaagtctgatcatggggcctttagccagagtccagccatgaagaag
cagtttgacagacacttaccttctcctcctgccttggacagtattatcacagagtatctg
agggagcagcacgcccgctgtaaaaaccctgtcgcaacctgcccacctttctctcttttc
accccccaccaatgccctgagcccaaacagagacggcaggcgcccatcaatttcacatcg
cggcattctcgtagagttatatatccaaaatatggaggcgtggatggaggatgctttgac
agacatcttatattcagcaggttccgtcccatctccgtgttcagggaggcggatgaggat
gagagcggattcacgtgttgtgccttctcagctcgtgagcggttcctgatgctcggaacc
tgtacaggccagctcaagctctacaacgtgtttacaggccaggaggaagctagctacagc
tgtcacagctccgcaatcactcacctggagccgtcacgggatggttctctgctcttaaca
tcagcctcgtggagttaccctctttctgcactgtggggcatgaaatctgtgttcatcatg
aagcattccttcctgggtgaccattatgtggagttcagcaagctttcacaagaccgtgtc
atagggacaaaagaacacgtagcacgcatttatgacgtacaaacaggtcaggttactctg
actctcaacaacccagacctggccaacaattacaagaggaactgcgccaccttcaaccca
acagacgacctggtcttgaacgatggcgtgctgtgggacatacgcatggctcaggccatc
cacaagtttgacaagttcaacatgaacatcagtggggtgtttcatcccaacggccaggag
gtcatcatcaacacagaaatttgggacctgcggaccttccacctcctccacacggttcct
gctctggaccagtgcaggatagtcttcaacaatagcggcaccgtcatttatggagcaatg
ttgcaagcagatgatgaagatgatatgatggaaatgcaaatgaaaagtccatttggttca
tcgtttaggaccttcaacgccacagattacaaaccaatcgccacaattgatgtcaagaag
aatatatttgacctttgcacagatacaaaagactgctacctcgctgtgattgagaatcaa
gactctgtgaacaccgacactgtgtgccgactttacgaagtcgggcggcagcgacttgca
gaggaagaggaggaggatgaggaagatcaggaggatgatgatcaggaggaagacgacgac
gatgacgacgactctgacgacgacgtcgacacggatcctctcatcgccgagctggagaac
gataacggaggtgaggacgaagatgatgacgatgggaacgatgagttctctccttcggat
gaagaggttgcgcgtcttctcgaagatgacggcgacggcggagatgacgacgatgaagat
ggtgatgacgacgacgatgatgacgacaatgatgatgatgatgactctgataatgatgtc
gatctagacggtgacaacgacagctcggacaactctgaccttgaagatgacatcatctta
tccctgaacgagtga
DBGET
integrated database retrieval system
