Xiphophorus hellerii (green swordtail): 116728544
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Entry
116728544 CDS
T07363
Symbol
vps11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog isoform X1
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04140
Autophagy - animal
xhe04148
Efferocytosis
xhe05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
116728544 (vps11)
04148 Efferocytosis
116728544 (vps11)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
116728544 (vps11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xhe04131
]
116728544 (vps11)
Membrane trafficking [BR:
xhe04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
116728544 (vps11)
Hops complex
116728544 (vps11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
Clathrin
TPR_Vps41
zf-C3HC4_2
zf-rbx1
zf-C3H2C3
zf-RING_2
zf-C3HC4
TPR_GEMI5
zf-RING_5
zf-ANAPC11
WD40_CDC20-Fz
WD40_Prp19
TSGP1
ADIP
Beta-prop_EML_2
zf-RING-like
zf_RING_Vps8_fungal
Kbp-5
Motif
Other DBs
NCBI-GeneID:
116728544
NCBI-ProteinID:
XP_032432639
LinkDB
All DBs
Position
11:complement(159073..167293)
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AA seq
928 aa
AA seq
DB search
MAAFLQWRKFVFFDKDTVKDPADSGKTFILPKGISASDSGRGHVVLGDMEGQIWLMTRSL
QLTSFQAYKLRVTHLFQLKQHSILVSVGQDEHGINPLVKVWNLDKRDSGNPLCTRIFPAV
PGNKPAEVSCLSVHENLNFMAIGFTDGSVVLTKGDITRDRHSKTLTLHEGSCPVTGLAFR
QMAKVTHLFVATLEKVFCYTLSNKEYPKVELDTHGCALCCSSLADPSQDSQFIVAGDECV
YLYQPDERGPCFAFDGHKLLTHWHRGYLFLLIKDVKSPNKSGFGSGENSLSEKQVLTIYD
LDNKFIAYSASFDDVIDVLAEWGSFYILTRNGKMFVLQEKDTQTKLEMLFKKNLFVMAIN
LAKSQHLDSDGLSEIFRQYGDHLYLKGDHDGAIQQYIRTTGKLEPSYVIRKFLDAQRIHN
LTAYLQALHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKSSENEVHFDVEIAIKVLRQA
GYHSHAVFLAERHQHHEWYLKIQLEDLKNYQEGLRYIGRLPFEQTESNMKRYGKTLMHHV
PEGTTLLLKRLCTNYHPSENSMEKVSLDSSLLNKVRANSEEFIPIFANNPRELKAFLEHM
IEVDPRSSQGVYDTLLELRLQDWAHEQDPEKKKVCQGEALSLLRSDNTVFDKALVLCQMH
NFKEGVLYLYEKGKLYQQIMHYHMQNEEYGKVVDACKRYGDQEGCLWEQALGYFARKEED
CKAYISEVLHHIDQKNLMPPLLVVQTLAHNSTATLSVIKDYLINKLQRESQQIEDDERKI
CQYREETSHLRSEIQELKASAKIFQKTKCNMCNSPLELPSVHFLCSHSFHQHCFESYAES
DAECPTCTPENRKVMDLLRAQDQKRDLHDHFNRQLRSSNDGFSVVADYFGRGVFNKLTLV
TDPPGSKTVGSLEVNLQRDLLIHTKRNC
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggcagcatttctacagtggagaaaatttgtcttctttgataaggacacggtgaaggat
cctgcagatagcggaaaaacctttattcttcctaaaggaatctcggcgagtgactccggc
cggggacatgttgttctgggagatatggaaggacagatctggctgatgacacgttccctg
cagttgacgtcgttccaggcgtacaagctgcgggtgactcacttgttccagctgaaacag
cacagtatcctggtatcagtgggacaggatgaacatgggattaatcctctggtgaaggtc
tggaaccttgacaagagagacagtgggaatccactctgcaccagaatctttcctgcagtt
cccggcaataaaccagctgaagtgtcttgtctcagtgtacacgagaacctgaacttcatg
gctataggcttcacagatggcagcgtggttttaaccaaaggggacatcaccagagaccgt
cacagtaaaactctgactctgcatgaggggagctgccccgtcacaggcctggccttccgc
caaatggcaaaagttacacatttgtttgttgccactctggaaaaagtattttgctacact
ctgtctaacaaggagtatccgaaagtagagctggatacccatggctgcgccctgtgctgc
tcgtccctggcagatccatcccaggattcccagtttattgtggctggggatgaatgtgtt
tacctgtaccagcctgatgaacgagggccctgctttgctttcgatggccacaagctgttg
acccattggcaccggggatacttgttcctgctgatcaaagatgtgaagtctcccaacaaa
tcagggtttggcagcggcgagaactcactgtcagaaaagcaagttttaacaatctatgac
ctggacaacaaattcatcgcctacagcgcctcattcgatgatgtcattgatgtgttggca
gaatggggatccttctacattctgacccgaaacgggaaaatgtttgttctgcaagagaag
gacacacagacaaaactggagatgctgttcaagaagaacttgtttgtcatggccataaac
ttggctaaaagccagcatctggacagtgacggtctgtcagagatctttcgacagtatggc
gatcatctgtacctgaagggagatcatgatggtgccatccagcagtatattcgcaccact
gggaagctggagccttcgtatgtcattaggaaattcctggatgcccaaaggatccacaac
ctgacggcatacctgcaggcccttcaccgccagtctctggccaatgcggaccacactaca
ctgctcctcaactgctatactaaactcaaagacagctccaagctggaagagttcatcaag
agcagcgagaatgaggtccactttgatgttgagattgccatcaaggttcttcgccaagct
ggataccacagtcatgctgtgttcctggctgaacgccaccagcatcatgagtggtacctg
aagatccagctggaggacctgaagaactatcaggaaggcttgcggtacattggccgtctg
ccttttgaacaaactgaaagcaacatgaagcgctatggcaagacgctcatgcaccatgtt
cctgaaggcaccacattgctcctgaagcgcttatgcaccaactatcatccgagtgaaaac
tcaatggaaaaagtcagcctggacagtagtctgcttaacaaggtccgggcaaattctgaa
gaattcatcccaatttttgccaataaccctcgtgagctgaaagccttcctggagcatatg
attgaggtggaccctcgttcatcccagggtgtgtacgacacactgctggagctccgactg
caagactgggcacacgaacaagatcctgagaaaaaaaaggtttgccagggagaagccctt
tcgctgctcagaagtgacaacactgtgtttgataaggccttggtcctttgccagatgcac
aactttaaagaaggtgtcctctacctgtatgagaaaggcaaactttaccagcaaatcatg
cattaccacatgcagaatgaggagtatggtaaagttgtagatgcctgcaaacgatatgga
gaccaggagggctgcctttgggagcaagctctcggatactttgccagaaaagaggaggac
tgtaaggcctatatcagtgaggtcctacatcacattgaccagaagaacctcatgcctcca
ttacttgtcgtgcagacactggcacacaactcaacggccactctgtcggttatcaaagac
tacctcatcaataagctgcagcgagagagccagcagatagaagatgacgagcgtaaaatt
tgccagtaccgtgaggaaacgtctcatctccgctctgaaatccaggagctgaaggcaagt
gccaagatattccagaagactaagtgcaacatgtgtaacagccccttggagcttccatct
gtacacttcctgtgtagccactcctttcaccaacactgctttgaaagttatgcagagagc
gatgcagagtgtccaacatgcactccagaaaaccgcaaagtcatggatctgctgcgcgct
caagaccagaaacgggatctccatgaccatttcaatcgacagctccgaagctccaatgat
ggtttctcggtggtggctgattattttggtcgaggagtgtttaacaaactgacgctggtc
actgaccctccagggagcaaaactgttggaagtctagaagtcaacctgcagcgagacctg
ctgatccacaccaagagaaactgctag
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