Xiphophorus hellerii (green swordtail): 116728584
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Entry
116728584 CDS
T07363
Symbol
rnf43
Name
(RefSeq) E3 ubiquitin-protein ligase RNF43
KO
K15694
E3 ubiquitin-protein ligase RNF43 [EC:
2.3.2.27
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
116728584 (rnf43)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xhe04121
]
116728584 (rnf43)
Enzymes [BR:
xhe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116728584 (rnf43)
Ubiquitin system [BR:
xhe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
116728584 (rnf43)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZNRF_3_ecto
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-rbx1
zf-RING_5
zf-RING_UBOX
zf-ANAPC11
FANCL_C
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
116728584
NCBI-ProteinID:
XP_032432698
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All DBs
Position
11:complement(18534372..18637078)
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AA seq
809 aa
AA seq
DB search
MTVPLRRLAGLWPWLLMAALQVVLGQPSMESGLRAVINVTLVKDPTGKPIVLKGEFVGGS
AGNAQGKLKQYHPVSLCNTSEDERQDSGFITIVKLEQLGPHCSPLLDKARIALERGAQAV
IFDVSDVAIADAELKNTDSLPHPVVLIKGADAKKLMNLVNHNEEATVVIEAKVEPKWPHY
DVSILLTIVLVILTIVLIFAFRYKCKSNRTWDSVHQQTMRAISRLETRIYRSQSCSGSQR
HRGAWGSASSSNSSPVCAICLEEFQDGQNLRIISCAHEFHRDCVDPWLMQHRTCPLCMHN
IMGTERQPQRNRNQQSSEQSQSFLHPQQYSNPHSHPFPQHAIPFSMRPHYPRGPSGPYPN
LGHYSGSSPMDAQTLHFLSSRQLGAGCGFHLPMDVPGRPHRLGTGCRTSAHHYASRRSCH
TYRSSCQAQRNASGSRLQHGASAAAQSRGVAGNGRQDDGSCSGGSYHTERSGYLADGPAS
DSSSGPWHGSSSDSVLNCTDVSLQGVYGSWSTFRSSLSSDYDPFGYFGTGPAAGVGSGHA
PRRNSLEATAQNRPKSLDSVVNKAGCLEEQPQTVFSHIHYHRHRHHHYEEGEHGQRPSRC
SDEEQGAAASAPSQDKDSPACPPKHSPCHCPKPEPTDRPSPGTERQDLDQTGPPVIVPPI
PLQLQPHCCHQGHGHPPAPVVGGCLLDGPSVHFHQSLDLQDDRSIHIHYGQSPAYCCTPP
ELHPALLPVPLILDSAGIEEWPCCGGAHVVWQRQVQQAHSEPQLMGPGTSMDRPPCRFHQ
GPSAERNTDICLYCQSIHHNQGSEEESGV
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtccctctgcggcgcctcgccgggctctggccgtggctgctcatggcggccctg
caggtggtgctgggccagccgagcatggaatcgggactccgagcggtcatcaacgtgact
ctggtgaaggatcccacggggaagcccatcgttctgaaaggggagttcgtgggaggaagt
gcaggcaatgcgcaagggaagctgaagcagtatcaccctgtgtctctgtgcaacacaagc
gaggatgaacgacaagacagcggcttcatcaccatcgtcaagctggagcaattaggtccc
cactgctcgccgctgctggataaggctcgcatagcgttggaaaggggagcccaagctgtt
atcttcgacgtcagcgacgttgccatcgcagatgccgagctgaagaacacagactccctc
ccccatccagtggtgctgattaagggagcggatgctaagaagctgatgaatctggtcaac
cacaatgaggaggctacagttgttattgaggccaaggtggagcccaaatggccgcattat
gatgtgagcatcctgcttaccatcgtcctggttatcctcaccatcgttctgatctttgct
ttccgctacaagtgcaagtccaacagaacttgggactccgtccatcagcagacaatgcgg
gccatcagtcggctggagaccagaatctaccgctcccagagctgctccggctcacagcgc
caccgtggggcgtggggctcggccagcagctctaactcgagccccgtctgcgccatctgc
ctggaggagtttcaggacggccagaatctgaggatcatctcttgcgctcatgagttccac
agagactgtgtggatccctggctgatgcagcaccgcacctgtcctctctgcatgcacaac
atcatgggaacggagcgtcagcctcagagaaacagaaaccagcagagctcagagcagagc
cagagcttcttgcacccgcagcagtacagcaaccctcacagccacccgttcccccagcac
gccatccccttctccatgaggccccactacccccgcggtccctctggaccctaccccaac
ctgggccactacagcggctcgtctcctatggacgctcagaccctccacttcctcagcagt
cggcagctgggtgccggctgcgggttccacctcccaatggacgttccggggcgaccccac
aggctcggaaccggctgtcggacctctgcccatcactatgcgtcccgccgctcctgccac
acttaccgctcctcctgtcaggcccagcggaacgcatccggctccaggctgcagcatggt
gcctcggcggcagcgcagagccgtggtgtggcgggcaacggccggcaggacgatgggagt
tgctctggaggcagctaccacacggagcgcagcgggtacctggcggacgggccggccagt
gactccagctcggggccttggcacggttcctccagtgactctgtcctgaactgcacggac
gtgtccctgcaaggcgtttatggcagctggtccaccttccgcagctctctgagcagtgac
tacgatccgttcgggtacttcgggacggggccggcggccggagtggggagtgggcacgcc
ccacgcaggaacagtctggaggccacggcccagaaccggcctaagtctctggattctgtt
gtgaacaaagcaggctgcctggaggagcagccgcagactgttttcagccacatccactac
caccgccacagacatcaccactatgaggagggggagcacggccagcggccgagcaggtgc
tcagatgaggagcaaggggccgccgcctccgctccgagtcaggacaaagactccccggcg
tgccctccaaaacacagcccctgccactgccccaagccagagcccaccgaccgacccagc
ccggggacggagcggcaggacctcgaccaaacgggaccgccggtcattgttcccccgatc
cccctgcagctgcagccccactgttgccaccagggccacggacacccccctgctcctgta
gtggggggctgtctacttgacggaccctccgttcactttcaccagagcctggacctgcag
gacgaccgcagcatccacatccactacggccagagcccggcctactgctgcacgccgccc
gagctgcacccggccctgctccccgtgcccctcatcttggactcggcgggcatagaggag
tggccgtgctgtgggggggctcacgttgtctggcagagacaggtgcagcaggctcactca
gagcctcagcttatggggcccgggacctcaatggacaggcccccctgcaggttccaccag
gggccctctgctgagcgcaacacggacatttgtttatactgccaatcgatacaccataat
cagggatcagaagaggagtctggggtgtaa
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