Xiphophorus hellerii (green swordtail): 116728710
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Entry
116728710 CDS
T07363
Name
(RefSeq) Down syndrome cell adhesion molecule-like protein 1 homolog isoform X1
KO
K06768
Down syndrome cell adhesion molecule-like protein 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xhe04515
]
116728710
Cell adhesion molecules [BR:
xhe04515
]
Immunoglobulin superfamily
DSCAM family
116728710
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
fn3
ig
Ig_DSCAM-DSCAML_C
V-set
C2-set_2
Pur_ac_phosph_N
Ig_5
C1-set
Ig_6
C2-set_3
Sp38
Receptor_2B4
ChitinaseA_N
DUF1461
DUF6034
Motif
Other DBs
NCBI-GeneID:
116728710
NCBI-ProteinID:
XP_032432882
LinkDB
All DBs
Position
11:complement(14056403..14125934)
Genome browser
AA seq
2126 aa
AA seq
DB search
MHGSLMKRGGDMGGAEAPLVSPPRLAGQQGWKYLPGAQSPVQHGDPPGQKNAPHTYQDCQ
QFLKNIPAIYGMWLVTLLLLYSLQEVHSEDVGSTRLYFVNASLQRVTYSSSVGVSLPCPA
GGTPSAILRWYLATGDDIYDVPHIRHVHANGTLQLYPFSPSAYNSYIHDNDYFCTAENQA
GKIRSPNIRIKAVFREPYTVRVADQRSMRGNVAVFKCLIPAAVQEYVSVVSWERDTVSIV
PGNRFSLTSFGALYISDVQKEDALSTYRCITKHKYSGETRQSNGARLSVMDPSESSPTIL
DSFQAGEVYAGQSIELPCIAGGYPSPTVRWLKDGRPLPSDARWTRRLTGLTISDLRQEDS
GSYACEVTNSFGSKEVSGQLHVIDPLRVTLSPKNLKTGISSTLFFTCTVEGSPEYTISWY
RNTEPIVPDQHIFIQGQHNDTLQITAAQKFHSGAYQCFASRKGHTAQDFSIILLEDGTPR
IVSSFSERVVNPGEPFSLMCSAKGAPPPSITWTLDDEPVVRDSTYKTSQYTLSDGLTVSH
VNVSSPLIRDGGVYRCVARNSAGSAEYQARINVRGPPRIRPMRDITAVAGRNTYITCRVI
GYPYYSIKWLKDGMQLPDNHRQVVFENGTLRLTDVQKGADEGTYLCSVLIQPQVSINQTV
HVTVKVPPLIQPFDIPSTSVGKLMYIACVVSSGDMPIRITWHKDGQLIVPGSASGVAIET
KEFMSSLQISKVTLKHNGNYTCIASNAAATVSWERQLIVTVPPRFVVQPNNQDCIYGKAG
VLNCSVEGYPPPKVMWKHAKGVGNPQQYHPVPLTGRIQIMSNGSLLIRHVLEDDRGYYLC
QASNGVGSDISKSMILTVKIPAMITSHPNTTMARKGQTKELNCTARGEQPIIIRWERGDT
VIDAERNPRYSITINKKGDEVISTLKLNPAERGDSVFFSCHAINSYGEGRGLIQLTVQEP
PDPPELEVREVKDRSMNLRWIQRFDGNSIITSYDIEYKNKSDSWDHMYTTRNISPTNNQA
NIVELHPACVYSIRMYSYNKIGRSLPSKELTISTEEAPPDGPPMDVVLQPMTSQSIRVTW
RAPKKELQNGVIRGYQIGYRENGPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQ
AFNRAGTGPSSTEINATTLEDVPSEPPQNVRAISVTSDEAVITWSEPPRMTLHGVLKGYR
VVFWSLFPDGGGCCGGRAQWPMQKWGEMQNITTTREQVELRGLEKFTNYSVQVLAYTQAG
DGVRSNVLYIQTREDLPGPPAGIKAVPSSPSSVVVSWLPPLKPNGVIRKYTIYCSSPGSG
QPAPSEYEANPEMLFYRITHLSRGKQYHIWAAAVTTAGRGNISSKVTVEPAGKVPAKILS
FGGTVTTPWMKEVRLPCSSVGEPAPTIKWTKDSEDSAVPVTADGQRQILSNGTLVLRSVK
AEDSGYYTCTATNTLGFDTIIVNLVVQVPPDQPRLTVSTTSTSSITLAWIPGDNGGSSIR
GFVLQYSVDNTEEWRDVFISSSERSFRLDNLRCGTWYKVKLAAKNSVGSGRISEIIEAKT
HGREPVFNKDQPLLTHINSTHAGLNLQGWTSGGCPITDLMLDFRPKGTWAWQSLKANSTN
QLFLSELREATWYELKMKACNSAGCGNQTSQFATTDYDGSTIPPIKSARGEGDDVKKLFS
IGSPVILVTLGVALLFIIRKKRKEKRLKRLRDAKSLAEMLISKNNRSIDTPVKGPPQGPR
LHIDIPRVQLLIEDKEGIKQIGEDKAAVPVTDTEFSQSVNPQNFCTGVSLHHQALIQNSG
PLIDMSDIRPGTNPVSRKSIKSAHSSRNRYSSQWTLSRPSQSTASARTLTSDWRTMGSHG
ITATESDSYSASLSQDTDKGRNSMVSTESASSTYEELARAYEHAKLEEHLQHAKFTITEC
FISDSSSDQMTTGTNDPADSMTSLSTPSEPGICRFTASPPKPQDYDRGKNVAVPIPHRAN
KSEFCNLPLYMKADPFFRKQGDSLHDPCPAVPPREASIRSLTQRAYHTQGRHKTLDPAKQ
QALTLGHSGLGSLGASSSTSTLPQRTLTMPSSNNAATASTSSTSSNPTNSNKVGGSRDSL
LESSSSALGRLQKQSVGAYSKSYTLV
NT seq
6381 nt
NT seq
+upstream
nt +downstream
nt
atgcacggtagtctcatgaagagaggaggggacatgggcggggccgaggcgcctctcgtt
tcccctccacgcttagcggggcagcagggctggaaatacctcccgggagcacagtcgcca
gtccagcacggagacccgcctggccaaaagaacgcgcctcacacttaccaggattgccaa
caattcctgaaaaatatacctgctatttatggcatgtggcttgtaactttactcctgctg
tactctctccaagaagtacacagtgaggatgtgggctctaccaggctgtactttgtaaat
gcctccctgcagagggtaacctactccagctcagtgggggtgtccctgccctgtcctgca
gggggcacccccagcgccatactgcgctggtacctggccactggcgacgacatctacgac
gtgccccacatccgccatgtgcacgccaacggcaccctccagctgtacccgttctcgccc
tccgcatacaacagctacatccacgacaacgactacttttgcaccgccgagaaccaggcg
ggcaagatccgcagcccgaacatccgcatcaaagctgttttcagggaaccctacactgtg
cgggtggcggaccaacgctcaatgcggggcaacgtagcagtgttcaagtgcctcattcct
gctgccgtgcaggagtatgtcagtgttgtgtcctgggaaagagacactgtttccattgtt
ccaggtaacaggttctccctgacctcctttggagctctttacatctctgatgttcagaaa
gaggatgccctctccacataccgctgcatcaccaagcataagtacagtggtgagacgcga
caaagcaacggagccaggctgtcagtaatggacccgagtgagtcctcgcccaccatcttg
gacagtttccaagccggggaggtgtacgccggccagagcatcgagctcccctgcatagcg
ggcggctacccgagccccaccgtgcgctggctgaaagatggtcggccgctgccctcagac
gcccgctggacccggcgcttgactgggctgaccatcagcgacctgaggcaggaggacagc
ggcagctacgcctgcgaggtcaccaacagttttggctccaaggaggtgtctggacagctt
cacgtaatagatccactgcgagtgacgctgtctcccaagaacctgaaaacaggcatcagc
agcaccctgttcttcacctgcactgtggagggttctccagaatacaccatcagctggtac
aggaacactgagcctattgttcccgaccagcacattttcatacagggacaacacaacgac
acgctgcagatcactgcagctcagaagttccactctggagcctaccaatgctttgcttcc
cgaaagggccacacagctcaggacttttccattattctcttagaggacggtactcctcgt
attgtgtcttccttcagcgagcgggtggtgaaccccggcgagcctttctctctcatgtgt
tctgccaaaggagccccaccgccctctatcacctggactctggacgatgagcccgtggtg
cgagattctacctacaagaccagccagtacaccctgtccgacggcctgaccgtgtctcac
gtcaacgtcagcagtccactcattcgagacgggggagtgtatcgttgcgtcgcacgaaac
tcggccggtagcgccgagtaccaagcgcgcataaacgtaagaggtccgcctcgaataaga
cccatgcgagatatcacagcggtggcaggcagaaacacatatataacatgccgcgtgatt
ggctacccgtactactcgatcaagtggctgaaggacggcatgcagctgcctgataatcat
cgtcaagtggtgtttgagaatggcaccctgaggcttacggacgtgcagaagggcgccgac
gaagggacctacttgtgtagcgttctgatccagccccaagtgtcaatcaaccagacggtc
catgtaacggttaaagtgccgccgctcatccagcccttcgacatcccctctacctcagtg
gggaagctcatgtacatcgcctgcgtggtgtcgtctggggacatgcccatacgcatcacc
tggcacaaagacggccagctcatagtgccaggctctgcctctggcgtcgcaatcgagacc
aaagagttcatgagttccctgcagatctccaaggtgacactgaagcacaacgggaactac
acctgcatcgccagcaacgccgcagccaccgtcagctgggagagacagctgattgtcacc
gtgccgccacgttttgtggttcagcccaacaaccaggattgcatttatggaaaagcaggc
gttctgaactgctcggtggagggttatccacctccaaaagttatgtggaaacacgccaaa
ggtgttggaaacccacagcagtaccaccccgtcccgctcaccggccgcatccagatcatg
tcgaacggctccctgcttatccggcatgtccttgaggatgacagagggtactacctctgt
caggcctccaacggcgttggctcagacatcagtaaaagcatgatcctcactgtcaagatt
cccgccatgatcaccagccaccccaacaccaccatggcgaggaagggccagaccaaggag
ctgaactgcacagcacggggcgagcagcccattattatccgctgggagagaggagacacg
gtcattgatgcagagagaaacccccggtactccatcactatcaacaagaagggagatgaa
gtcatctccaccctgaagctgaacccagccgagcgaggagattcagtcttcttctcctgc
cacgccatcaactcctatggagagggccgagggctcatccaactcacagtgcaagaacca
ccggatcccccggagctggaagtgagggaggtgaaggacagaagcatgaacctgcgctgg
atccaaaggtttgatggcaacagcatcatcaccagctatgatattgagtacaagaataaa
tcagactcttgggatcacatgtacacaaccaggaacatctcccctacaaacaatcaagcc
aacattgtggaattgcatccggcttgcgtttacagcatccgcatgtattcgtataacaaa
atcggacgcagcctccctagcaaagagctcactatcagcactgaggaagcgccacctgat
gggcccccgatggatgttgtcctccaaccgatgacgtctcagagcattcgagtcacatgg
agggctcccaagaaggaactgcagaatggggttatccgaggctatcagatcggctacaga
gagaacgggcctggcagcaacggccagtacagcatcgtggagatgaaagcaacgggggac
agcgaggtgtacaccttggacaacctgaagaagtttgctcagtacggcgtggtcgtccag
gctttcaacagagctggaactgggccgtccagcaccgagatcaacgccaccacactggaa
gacgtgccgagcgagcccccacagaacgtgagagcaatctcggtgacgtcggatgaggcg
gtgatcacgtggtcggagcctccgcgcatgacgctgcacggcgtgctgaaaggctaccgg
gttgtgttttggtccctcttccccgacggaggtgggtgctgtgggggccgggcccagtgg
ccgatgcagaaatggggagagatgcagaacatcaccaccacacgtgaacaggtggagctg
cgagggctggagaaattcaccaactacagcgttcaggttctggcctacacgcaggccggt
gacggagtccgcagcaacgtcctgtacatacaaacgcgcgaggaccttcccggtccacca
gccggcatcaaggcagttccttcctctccaagcagcgtggtcgtgtcctggttaccacct
ctcaaaccaaatggtgttatccgcaagtacaccatttactgctccagtccaggatctggg
cagccggcgcccagcgagtacgaggccaaccccgagatgctcttttaccgtatcacgcac
ctcagccgcggcaaacagtaccacatctgggccgcggccgtgacgaccgccggccgcggc
aacatcagctcaaaggtcacagtggagcctgctgggaaagtcccggcaaaaatcctctcc
ttcgggggcacggtgaccacgccctggatgaaggaagtccgtctgccctgcagctcggtc
ggcgagcccgcccccaccattaaatggaccaaagacagcgaggattctgccgtcccagtg
acggccgatggtcagcggcagatcttgtccaacggcacgctggtgctacgttcggtaaaa
gccgaggattctgggtactacacctgcacggcgactaacaccctgggctttgacaccatc
attgtgaatctggtggtgcaagttcctcctgaccagcctcgtctgactgtctccaccacc
tccacctcctccatcaccctggcttggattccaggggacaatggaggaagctctatcaga
ggatttgtgctgcagtattctgtggacaacacagaggagtggagggatgtgttcatcagc
tccagcgagcgctccttcaggctggacaatctgcgctgcggaacatggtacaaagtcaag
ctggcagccaagaacagcgtcggctcgggtcgcatcagtgagatcatcgaggccaagacg
cacggaagagagccggtgtttaacaaggaccagccgctactcacccacatcaactccacc
catgcgggactcaacctgcagggctggaccagtggcggctgccccatcactgacctaatg
ctggacttcagacctaaaggcacctgggcctggcagagccttaaggccaactccaccaat
cagctgttcctcagcgagcttcgcgaggccacatggtacgagctcaaaatgaaggcctgc
aacagcgctggctgtggaaaccagacctcccagtttgctaccaccgactatgatggcagt
acgatcccccccattaaatctgcccgtggagagggggatgacgtgaaaaaactgttctcc
atcggctctcctgtcatcctggtcactctgggcgtggctttgctcttcatcatccgtaag
aaacgcaaagagaagaggcttaaacggctcagggatgctaagagcctggctgagatgctg
atcagcaagaacaatcgcagcatagacacgccggtgaagggccctccgcaagggccgagg
ctccacatcgacattccccgagttcagctgctcatcgaggacaaggaaggcatcaaacag
ataggagaggacaaggcagcggtgccggtgacagacaccgagttcagccagtcagtgaat
ccccagaacttctgcacgggcgtgtccctgcaccaccaggccctgatccagaactcagga
cctctgattgacatgtcagacatccgccctggcacaaaccctgtgtccaggaagagcata
aagtccgctcacagctccaggaacagatactccagccagtggacactgagtcgaccgagt
cagtccacagcttcggcgcgaactctgacgtccgactggcggacgatgggctcccacggc
atcaccgccaccgagagtgacagctacagcgccagcctctctcaagacacggataagggt
cgtaacagcatggtgtcgacggagagcgcctcctccacctacgaggagctggcccgagcg
tacgagcacgccaagctggaggagcacctgcagcacgccaagttcaccatcacagagtgc
ttcatctccgacagctcgtcggaccagatgaccaccggtaccaacgaccccgcggacagc
atgacctccctcagcacgccgtctgagccgggcatctgccgcttcaccgcctcgccaccc
aaaccgcaggactacgaccgcgggaagaacgtggcggtgcccattccccaccgggcaaac
aaaagtgagttctgcaatctacccctttacatgaaggcagacccattcttccgcaagcaa
ggggactctctgcatgacccgtgtccagcagtgccgccacgggaagcctcgatccgcagc
ctgacgcagcgggcgtaccacacccagggccgtcacaagactctagacccggccaagcag
caggccctgacgctgggtcactccggcctgggcagcctgggcgcgagctccagcacctcc
accttgccccagaggactctcaccatgcccagctccaacaacgcagcgacggcctccacg
tccagcacgagcagcaaccccaccaacagcaacaaggtgggcggctccagagactcgctg
ctcgagagcagctcctcggccctggggaggctgcagaagcagagcgtgggggcctactcc
aagtcctacacgctggtgtag
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