Xiphophorus hellerii (green swordtail): 116728730
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Entry
116728730 CDS
T07363
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like isoform X1
KO
K07466
replication factor A1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03030
DNA replication
xhe03420
Nucleotide excision repair
xhe03430
Mismatch repair
xhe03440
Homologous recombination
xhe03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116728730
03420 Nucleotide excision repair
116728730
03430 Mismatch repair
116728730
03440 Homologous recombination
116728730
03460 Fanconi anemia pathway
116728730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xhe03000
]
116728730
03032 DNA replication proteins [BR:
xhe03032
]
116728730
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116728730
Transcription factors [BR:
xhe03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
116728730
DNA replication proteins [BR:
xhe03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
116728730
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
116728730
MMR (mismatch excision repair)
116728730
DSBR (double strand breaks repair)
HR (homologous recombination)
116728730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
Extensin_1
DUF223
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
116728730
NCBI-ProteinID:
XP_032432907
LinkDB
All DBs
Position
11:23677064..23717612
Genome browser
AA seq
700 aa
AA seq
DB search
MTAKLTHGAVEALVKGSHVENPVLQLLNIRQINTTGVPRYRLMMSDGQHYLSSFLMATQL
NHLAEENLLVPHCVCLLKRTTNNTLSDGRHVVVVVDMEVLKSAEEAGEKIGNPKSYSTDG
QLSSPNKVSSTTSEPSSTSAAEVPGPSNNSKGWGTGFTGKAPVKTSPMKTFPMKGSPMKT
SPMKASPMMTSPMKGSPMKGSSMMTSPMKGSPMKGSSMMTSPMKGSPMKGSSMMTSPMKG
SPMKGSPMMTSPFKGSPMKASTSSPGSVPKVMPIATLNPYISKWTIRARVTNKSNIRNWS
NSRGEGKLFSFEVVDESGEIRITAFNNEVDKFFTLLEQGKVYYISKATLKVANKQYTTLK
NDYEMTLHAHSSIVPCTDSPEVPVMQCDFVPIGELENRDKDSIVDIIGVCNSADDVSRIT
TKTSREVSKRAISLIDTTGKEVTVTLWGEEAEKFDDSGQPVVAIKGARLSDFRGISLSAL
FSSTIMVNPDLPEAFRLRAWYDREGYAVDSQSLTETMSVSVGSKMNWRTLSDVKNENMGH
GEKADYFSCVATIVYIRKENCLYQACPSSDCNKKVIDQQNGFYRCEKCNREFPNFKYRLL
LSANLADFGDNQWVTCFQETAEVLLGRKAEELGQLRETDEAEFDEVFQKANFSTHIFKNR
VKLETYNDESRVKVTVMEVLPVDHRVYSRRLLSNIQKLAH
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgaaattaacacatggggcagttgaagcccttgtgaaaggatcgcatgtagag
aatccggtgctgcagttactgaacattcgtcagattaataccacaggtgtgcccaggtac
cgcctcatgatgagtgatggtcagcactacttgtcttccttcctgatggccacccagttg
aaccatctggcagaagagaaccttcttgtaccacattgtgtgtgtttgttaaaaaggaca
accaataacactttgtcagatggccggcacgtggtcgttgttgtggacatggaggtcttg
aagtcagcagaagaagctggagaaaagattggaaatcccaaatcatattcaacagatggt
cagttgtcatctccaaataaggtgtcatcaaccacctcggaaccatcatccacttcagcc
gctgaggtacctggaccgtccaacaacagcaaaggatggggaacaggttttactggaaaa
gctcctgtgaagacttcaccaatgaagacctttcctatgaaagggtcgcccatgaagacg
tcacccatgaaagcctcacctatgatgacctctcccatgaaagggtcacccatgaagggt
tcatcaatgatgacctctcccatgaaagggtcacccatgaagggttcatcaatgatgacc
tctcccatgaaagggtcacccatgaagggttcatcaatgatgacctctcccatgaaaggg
tcacccatgaagggttcaccaatgatgacctctcccttcaaagggtcacccatgaaggcg
tccaccagttcaccaggttctgtcccaaaagtgatgcctatcgctaccctcaacccgtac
atcagcaagtggactattagagccagagtcacaaacaaatccaatatccgtaactggagt
aactccagaggggagggcaagctcttctcctttgaggtcgtggatgagagcggtgaaatc
aggatcacagccttcaacaatgaagtggacaagtttttcactctattggagcaaggcaag
gtgtactacatctcgaaggctactctaaaggtagccaacaaacagtatacgacactgaag
aacgactacgagatgaccctccatgctcattcatctattgtaccttgtacggacagtccg
gaagtcccagtaatgcagtgtgactttgtgcccattggagagctggaaaaccgagacaaa
gactccattgttgatataattggagtgtgcaacagtgcagacgatgtatcccgtatcacc
actaagaccagccgggaagtctccaagagggccatcagcctaatagacaccactggcaaa
gaggtgacagtcacactgtggggagaagaggcagaaaagtttgacgactccggacagcct
gttgttgccatcaaaggagctcgcttgtctgattttcggggcatatctctctcggctttg
ttcagttctactattatggtcaacccagatttacccgaagccttcagactcagggcctgg
tatgaccgggaaggttatgcagttgacagccagtcactaacagaaaccatgtcagtcagt
gttggatcgaagatgaactggagaacgctgagtgatgttaagaatgaaaacatgggacat
ggagaaaaggcagactattttagctgcgtggcaactatagtatacatacgtaaagaaaat
tgtttgtatcaagcctgtccgtcttcagactgcaacaagaaggtcatagatcaacagaat
ggtttttaccgctgcgagaagtgtaacagagagttccccaacttcaaatatagactccta
ctttcagctaacttggcagacttcggggataaccagtgggtgacatgcttccaggagaca
gctgaggtcctgctgggtcgcaaggcagaagagctgggacagctcagagaaacagacgag
gcagagtttgatgaagtcttccagaaagccaacttctctacccacatctttaaaaaccga
gtcaagctggagacatataatgacgagagtcgggtgaaagtgaccgtaatggaagtactt
cctgtcgaccacagagtgtacagccgaagactcctcagcaacattcaaaaattggctcac
tga
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