Xiphophorus hellerii (green swordtail): 116728756
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Entry
116728756 CDS
T07363
Symbol
nfrkb
Name
(RefSeq) nuclear factor related to kappa-B-binding protein isoform X1
KO
K11671
nuclear factor related to kappa-B-binding protein
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116728756 (nfrkb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xhe03036
]
116728756 (nfrkb)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Chromatin remodeling factors
INO80 complex
116728756 (nfrkb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NFRKB_winged
ASXH
Motif
Other DBs
NCBI-GeneID:
116728756
NCBI-ProteinID:
XP_032432945
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Position
11:complement(11332009..11343765)
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AA seq
1278 aa
AA seq
DB search
MDPLEHMLTDPLEPKEEDGRQITEECLLGNCKVDLPEVLLEDPDIFFSVLSENTWDEVLT
DSQRQHLQQFLPQFPDNNTEEQDRTIRELFNNTNFNFGNPVHLAQRLFRDGYFNPEVVKY
RQLCAKSQRKRQLHSLQQYYHRLLKQILVSRKELLDFAVQNSLDFPPKRRLPNRTQPETR
ESRVRRRLSRILKDVKVECEDSNASSDDEDVSVWNPAPQSPSSPTPTISLRVLPSLSTPD
MKITEKVELGEMDLKVMLHHHREKRKRQPDHPDLITSDIHLGDVLSRANIGRKGALPLFD
LLLPKKKMRDERKKKKLKAIKVESEDPCEILTPSDSCSAPPVNIINSLPEAPSTPLANIK
EEIVEEAQSSPVAVEEITASFFSLLESIFRAEGPASTLMLEEKVQTWQSSPASSLNTWFS
SASCWSDLVLQALQFLAGETKDGMMALPSGFSPFVEFVDDFQQWRWIGPTQDTEKDLIAL
CQLWLDSKDFVVKTENEDLLELTSPTPKLSTDYVVRPSTGDEKQVFQVQEQQRYNQPHKA
FTFRMHGFESVVGPVKGVFDKEMSLNKAREHTLLRSDRPPYVTILSLVRDAAARLPNGEG
TRAEICELLKDSQFLAPDVTSAQVNTVVSGALDRLHYEKDPCVKYDIGRKLWIYLHRLRS
QEEFERIHQAQAAAAKARKAQQQKPKPASKPKSGSKDGSSKTPGSLEAGLDLGCNSMSPV
PTTPTPNTPGTPKSPLHLSATTPTKTAVPDTLKTSPGVLLVSPPSLPQLGTILPTSQACP
PASQPVTSQQAARIVSHLAAGSLPQVRVVSAQPSGLGPSAAAQQATLVHQTSHQIRMPVS
MAAKGISQAVVSVPLRSPSGSSPVQVPTSLSVSAINVTKPQSGSPGSPANNPTPPAVLQG
VTSPNIKQVSITGQLGMKTPGGGGIPITATNLRIQGKDVLRLPPSSITTDAKGQTVLRIT
PDMMATLAKSPVATVKLTSDFLGGAASGSKSISATLHVAPPHPSPSPASATPPSTAEAQS
AKSGSVASTLLKAGGETAIRLMPTLAVSVADQKSRTFSTVASPDKSSATIRIMPGLGVIP
QKQGQTITMTTASGSKPLAASTCGNIVTMAASVVAGAKGITVAPAASGSPLSLGVTTATV
RQVPASVVTTQTGKLPARITVHSVLNQPLKSKSVVTTPIVKGNLNTNSISSLGRNIILTT
VPAGTKLIAGNKPVSFVTAQQFQQLQQQGQATQVRIQTVPTQQLQHVAASSPKPVSTVVV
TTAPPSKCTPDPPPAPQQ
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atggatccgcttgaacacatgctgacagaccctctggagcctaaagaggaagacggaaga
caaattactgaggagtgtttgcttgggaactgtaaagtggacctcccagaggttctgctg
gaggatcctgacatttttttctctgtgctgagtgaaaacacttgggatgaagtactgaca
gactcccagagacaacatcttcaacagtttctgccacagtttcctgacaacaacacagag
gagcaggatcgtaccatcagggagttgttcaacaacaccaactttaactttgggaatcca
gtccatcttgcacagaggctgttcagagatggttacttcaatccagaggtggtcaagtat
agacagttgtgtgccaaatcccaaaggaagcgccagctgcattcccttcagcagtattac
cacagactcttgaagcagattcttgtttccagaaaggagctgctcgacttcgcagttcag
aacagtctggactttccacccaaacgacggctgccaaacaggactcagcctgagacacgg
gagtcgagagtaagaagaagactgagccgcatcctgaaggacgtcaaagttgagtgtgag
gacagcaatgcgtcctctgatgacgaagacgtgtcagtgtggaatccagcccctcagtct
ccgtcctctcccactcctaccatctcactcagagttcttcctagcctctctacaccagac
atgaagattacagaaaaagtagaattaggggaaatggatttaaaagtcatgctgcatcac
catcgtgagaaaaggaaacgccagccagatcatccagacttgataacctctgatatccac
cttggggatgttctctcaagagcaaacattggtcggaagggagctttgccactttttgat
ttgttgcttcccaagaagaagatgagagatgagagaaagaagaagaaactcaaggcgata
aaagtggaatctgaggatccttgtgaaattctgactccttcagactcctgctcagcacca
ccagtgaatatcatcaactctttgccagaggcgccttccacacctctagccaacatcaag
gaggaaattgtggaggaagctcaaagcagccctgttgcagttgaggaaataaccgccagt
ttcttcagcttgttggaaagcatcttcagagcagagggtcctgccagtaccttgatgttg
gaggaaaaggttcagacttggcagtcctctccagccagttcgctcaacacctggttttca
tctgcctcatgctggtcagatctagttcttcaagctctgcagtttcttgcaggagagact
aaagatggcatgatggcgctccctagtggcttttctccgtttgtggagtttgtcgatgat
tttcagcagtggagatggatcggccccactcaggacacagaaaaggacctcattgcgctc
tgtcaactctggctggactccaaagacttcgttgtcaaaacagagaatgaagacctgttg
gagcttacgtcccccactcccaaactttcaactgattatgtggtgcggccgagcactgga
gatgagaaacaagtgtttcaagttcaggagcagcagagatataaccagcctcacaaagcc
tttaccttcaggatgcatggcttcgagtccgtggtggggccagttaaaggcgtgtttgat
aaggaaatgtccttaaataaagccagagaacacacactgcttcgctctgaccgaccacca
tatgtcaccatcctctctctggttcgggatgcagctgcccggttacccaatggagaggga
acaagggcggaaatctgtgaacttttaaaagattcccagttccttgctccagatgtcaca
agcgcacaagtgaacacagttgtcagcggggctctggacagacttcactatgagaaggat
ccctgtgtgaagtacgacatcggccgcaaactgtggatttacctgcatcgcctccgcagt
caggaagagtttgagaggatccatcaggctcaagctgcggctgcaaaagcaagaaaagct
cagcagcaaaaacccaaaccagcatctaaaccgaagtctggaagtaaagatggaagcagc
aaaacacccggatctctggaggccggactggacctaggctgtaattccatgtctccagtc
ccaacaactcccaccccaaacactcctggaacccccaaatcacctctacatctctctgct
accacaccaacaaaaaccgcagttccagacacgctgaaaaccagcccgggtgttctcctt
gtctctcctccatcactgcctcagctgggaacgatcctacccacgagtcaggcttgtccg
ccggcctcccagccagtaacttcccagcaggcagctcggatagtgagccacctggcggcg
ggctccctccctcaggtccgggtcgtttccgctcagcccagcggtctgggtccatcagca
gccgctcagcaggccactctggtgcatcagacatcgcaccagatccggatgcctgtgtcc
atggcagccaagggcatttcacaggctgttgtttctgtgcctctaagaagtccgtctggt
agcagtcctgtccaggttccaaccagtctctctgtgtcggctattaatgtgaccaaacct
cagagcggttctccaggtagccccgctaacaaccccactcctccagctgtgctgcaaggt
gtcacctccccgaacatcaaacaggtttccatcactgggcagctgggaatgaagactcca
ggtggaggaggaattccaataactgcaacaaacttgcgtatccagggtaaagatgtcctc
cgtctccccccatcctccatcaccaccgatgctaaaggccaaacagtgctgcggataacc
cccgacatgatggccactcttgccaaatctccggtcgcgactgtaaagctcacctctgac
ttcctgggcggggccgcctccggcagcaagagcatatcagccacgctccacgtagcaccg
cctcacccttcaccgtcacctgcctccgctaccccacccagcaccgcggaggcgcagtcg
gctaaatcgggctccgtcgcctccaccttgctgaaagctggaggagaaacagccataagg
ctgatgccgactttggccgtcagcgtggccgaccaaaaatccaggaccttctccaccgtg
gcgtccccagacaagagcagcgcaaccatccgcataatgcccggccttggggtcattccc
cagaaacagggtcagaccatcaccatgacaaccgccagtggcagcaaaccactagcagcg
tctacatgtggcaacatagtgaccatggcagccagcgttgtggctggagctaaaggcatc
accgtggctcccgcagcctccggttcaccgctgtctttgggagtgactaccgcgactgtg
agacaagtccctgcttcggttgttacaacacaaacgggaaagctacctgcccggatcact
gtgcactccgtcctcaaccaacccctgaagagcaagagtgtggtgacgactccgatagtc
aaagggaacctcaatacaaacagtatcagcagcctgggtaggaacatcatcctaaccacg
gtgcctgcaggcacaaagctaatagcggggaacaagccggtcagtttcgttaccgcacaa
caattccagcagcttcagcaacaaggccaggcaacacaggttcggatccaaacggtcccg
actcagcagctccagcacgtggcagccagttcccccaaacccgtttcaacagtggttgtc
acgacagcaccaccatctaaatgtacacccgatcctccacccgctcctcagcaatga
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