Xiphophorus hellerii (green swordtail): 116728955
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Entry
116728955 CDS
T07363
Symbol
rfc3
Name
(RefSeq) replication factor C subunit 3
KO
K10756
replication factor C subunit 3/5
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03030
DNA replication
xhe03410
Base excision repair
xhe03420
Nucleotide excision repair
xhe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116728955 (rfc3)
03410 Base excision repair
116728955 (rfc3)
03420 Nucleotide excision repair
116728955 (rfc3)
03430 Mismatch repair
116728955 (rfc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xhe03032
]
116728955 (rfc3)
03036 Chromosome and associated proteins [BR:
xhe03036
]
116728955 (rfc3)
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116728955 (rfc3)
DNA replication proteins [BR:
xhe03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
116728955 (rfc3)
DNA Replication Termination Factors
ELG1-RFC complex
116728955 (rfc3)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
116728955 (rfc3)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
116728955 (rfc3)
Check point factors
HRAD17(Rad24)-RFC complex
116728955 (rfc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC_C
RCF1-5-like_lid
DNA_pol3_delta2
Rad17
AAA
AAA_22
AAA_16
AAA_11
ABC_tran
Rep_fac_C
Motif
Other DBs
NCBI-GeneID:
116728955
NCBI-ProteinID:
XP_032433203
LinkDB
All DBs
Position
11:23203022..23207094
Genome browser
AA seq
356 aa
AA seq
DB search
MSLWLDKYRPTSLGKLDYHKEQATQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLKELY
GPGVEKLRIEHQTIVAPSKKKIEINIIASNYHLEVNPSDAGNQDRVVIQELIKTVAQSQQ
IQSSTHREFKVVLLTEVDRLTKDAQHALRRTMEKYMTTCRLILCSTSTSKVIGPIQSRCL
AVRVPLPSTEEVCSVLTSVCKKEGLLLPPELAKQISEKSGRNLRRALLMCEACRVQQYPF
SADQDVPEPDWEVYLRETANAIVSQQSPQRLLEVRARLYELLTHCIPPDIIIKGLVEELL
NNCDGQLKTEVAHLAAYYEHRLQLGSKAIYHLEAFIAKFMAMYKKFMEDGLDAMMF
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atgagtttgtggctggataaatatcgaccgacgtctcttgggaaacttgactatcacaaa
gaacaagcgactcaactgaaaaacctggttcagtgcggcgactttcctcacttgttggtg
tacggaccatcaggagcgggaaaaaaaacccgcatcatgtgtttgctgaaagaactgtat
ggaccaggggtggagaagcttcgcatagagcatcaaactattgtggctccatcaaaaaag
aaaattgagatcaacataatagccagcaactatcacttagaggttaacccaagtgatgcg
ggaaaccaggatcgtgtggtgatccaggagctgattaaaactgtggcccagtcccagcaa
atccagtccagcactcatagagagttcaaagtggtgctgcttacagaggtggacagactt
actaaggatgctcagcatgccttgcgacgcacaatggagaagtatatgactacctgtcgt
ctcattctctgctcgacatccacctcgaaggtcatcgggccgatccagagcagatgtctg
gctgtcagagtccctctgccgagcacagaagaggtgtgcagtgttctgacgtcggtctgt
aaaaaggaaggtctgctgctgccgcctgagctggccaagcagatcagcgaaaagtcgggt
cgcaacctccgcagagctcttctgatgtgtgaggcgtgcagagtgcagcagtatccattc
tcagcagatcaggatgtgccagagccggactgggaggtctacctgagagaaactgctaat
gccatcgtcagccagcagagtcctcagaggttgttggaggttcgagccaggctgtacgag
ctgctgacgcactgcatccctcctgatatcatcataaagggtttagtggaagaactactg
aataactgcgacgggcagctaaagacggaggtggcccacctggctgcttactatgagcac
cgactccaactgggcagcaaagccatctaccacctggaggcgtttattgcaaagttcatg
gccatgtacaagaagtttatggaagacggcctggacgccatgatgttttga
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