Xiphophorus hellerii (green swordtail): 116729097
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Entry
116729097 CDS
T07363
Name
(RefSeq) clathrin heavy chain 1-like isoform X1
KO
K04646
clathrin heavy chain
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04142
Lysosome
xhe04144
Endocytosis
xhe05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
116729097
04142 Lysosome
116729097
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
116729097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xhe04131
]
116729097
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xhe04147
]
116729097
Membrane trafficking [BR:
xhe04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
116729097
Exosome [BR:
xhe04147
]
Exosomal proteins
Proteins found in most exosomes
116729097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
capSnatchArena
Gp18_dom_I
RMC1_N
Motif
Other DBs
NCBI-GeneID:
116729097
NCBI-ProteinID:
XP_032433326
LinkDB
All DBs
Position
12:5466732..5507098
Genome browser
AA seq
1700 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGVNPANIGFSYLTMESDKFICIREKVGEQNQVVIVDLSDPNN
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTTTEEVMFWKWISVNTV
ALVTDTAVYHWSMEGDSQPTKVFDRHASLAGCQIIHYRTDEQQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAAFGEFKVEGNAKPSTLFCFAVRSQAGGKLHIIEVGQPAAG
NQPFAKKAVDVFFPPEAQTDFPVAMQIGNKHGVIYLITKYGYIHLYDLESGVCIYMNRIS
AETIFVTAPHEATSGIIGVNKKGQVLSVCVEEENIVNYATNVLQNPDLALRMAVRSNLVG
AEELFGRKFNTLFAQGSYSEAAKVAASAPKGILRTAETIRKFQSVPAQPGQASPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKASDPTLALSVY
LRANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWVFLLRNVMRVNPDQGLQFAQMLVQD
EEPLANINQIVDVFMEGSLIQQCTSFLLDALKNNRPAEGHLQTRLLEMNLIHAPQVADAI
LGNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VDDSLECLRAMLSANIRQNLQLCVQVASKYHEQLGTQALVELFESFKSYEGLFYFLGSIV
NFSQEPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLIMVVRGQ
FSTDELVDEVEKRNRLKLLLPWLESRILEGCEEPATHNALAKIYIDSNNTPERFLKENPF
YDSAVVGRYCEKRDPHLACVAYERGQCDLDLIKVCNENSLFKSEARYLVRRKDPELWAKV
LEEDNPFRRQLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFKKFDVNT
SAIQVLIEHIGNLDRAYEFAERCNEPAVWSQLARAQLHRDLVKEAIDSYIKAVDPSAYME
VVNAASKNNNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFVSGPNNAHIQ
QVGDRCYEEGMYEAAKLLFNNVSNFARLASTLVHLGEYQAAVDSARKANSTRTWKEVCFA
CVDGEEFRLAQICGLHIVIHADELEDLISYYQDRGYFEELIALLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQSHLWAELVFLYDKYEEYDNAVITMM
NHATDAWKEGLFKDIIAKVANVELYYKSLSFYLEYKPLLINDLLTILSPRLDHNRAVSFF
SKMNQLKLVKPYLRSVQNHNNKAVNEALNNLLTEEEDYQSLRASIDAYDNFDTIDLAQRL
EKHELIEFRRIAAYLYKRNNRWRQSVELCKKDKLYKDAMLFAAESKDAELAETLLQWFLE
EDRKECFAACLFASYDLLHPDVVLELAWRHNIMDFAMPYFIQVTREYLTKVDEFAAKVMV
DKLEEAESQRKTEDDVKEPQPMVFGQQLMLTSAASPVAAQPAYPAYGFPPAAAAAAAAAA
AAAPPAAAGYPAQPAYGFNM
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatattaccaatacggtttcaggaacatctccagttgcagaacctgggtgtg
aacccagctaacatcggcttcagctacctgaccatggagtcagacaagttcatctgcatc
cgggagaaagtgggcgagcagaaccaggtggtgatcgttgacctgtccgaccccaacaac
ccaatcaggaggccgatctccgctgacagcgccattatgaaccctgcaagcaaggttatc
gcgctaaaagacgctgccaaaaccctgcagatcttcaacatcgagatgaagagtaagatg
aaggctcacaccaccacagaggaggtcatgttctggaagtggatatctgtgaacaccgtt
gccttggtgacggacacggcggtctaccactggagcatggagggggattcccaaccgacc
aaagtgttcgatcggcacgccagtctggcaggttgtcagatcatccactatagaactgac
gagcaacagaagtggttactgctgatcgggatttctgcacagcaaaatcgcgtagtcgga
gcgatgcagctgtactcggttgacaggaaagtctcccagcccatcgaaggccacgccgct
gcctttggggagttcaaagtggagggaaatgccaaaccttccacgttgttctgctttgct
gtgcgctcacaggcaggaggaaagttgcacatcattgaagttggtcagcccgctgcagga
aaccagccatttgctaagaaagcagtggatgtgtttttccctccagaggcccagacagac
ttccctgtagctatgcagattgggaacaagcatggtgtgatatatttgatcacaaaatat
ggttacattcacctgtacgacctggaatctggagtgtgtatatacatgaaccgaatcagt
gcagagactatctttgttacggcccctcatgaggccacctcggggatcatcggcgttaat
aagaagggacaggtcttgtcagtgtgtgttgaagaagaaaacatcgtcaactatgctaca
aacgttctgcagaaccctgatctcgccctgaggatggccgtgagatctaatcttgttggg
gctgaggagctttttggcagaaagtttaatactctgtttgcccagggaagttactcagag
gctgcaaaggttgctgcatctgcacccaagggtatcctccgaacagcagaaaccatacgc
aagttccagagtgtcccagcccaacctggtcaagcctcacctctgctccagtacttcggg
attcttttggaccagggccagctcaacaagtttgagtctctggagctgtgcaggcccgtc
ctgcagcaaggccgcaagcagctactggagaaatggctgaaggaggacaagctggagtgt
tcagaggaactgggcgatctggtaaaggcctcggacccaacgttagctcttagtgtttat
ctcagagcaaatgtccccaacaaagttattcagtgctttgcagaaacaggacagttccag
aagatagtgctgtatgccaaaaaggtgggatacaccccagactgggtgtttttgttaagg
aacgtaatgcgagtcaacccagaccaaggactgcagtttgcccaaatgcttgtccaagat
gaggagccgctggccaacatcaaccagattgttgatgttttcatggagggcagcctgatt
cagcagtgcacttcctttctgttggatgctctgaagaacaaccgtccagctgaaggacac
ttacagacacgtctgcttgagatgaacctgatacacgctccccaggtagcagatgcgatc
ctggggaaccagatgttcacacactatgaccgggcccacgtcgctcagctgtgtgagaag
gcagggctgctgcagagagcactcgaacactacaccgacctgtacgatatcaaacgagcc
gtggtgcacacacatctgctcaaccctgagtggctggtgaactttttcggctccttgtca
gtcgacgactctttggagtgtttgagggccatgttgtcggctaacatcaggcagaacctg
cagctgtgtgtgcaggtagcatcaaagtatcatgagcagctgggaactcaggcgctagtg
gagctcttcgagtccttcaagagttatgaaggtctgttttacttccttggctcgatcgtg
aatttcagccaggaacccgacgttcactttaaatacatccaggctgcttgtaagacgggt
cagatcaaagaagtggagagaatatgcagagagagcaactgctacgacccagagagggtt
aaaaacttcctaaaggaggcgaagttaacagaccagcttcccctcatcattgtgtgcgat
cgctttgactttgtccatgatctggtgctctacctgtaccgcaacaatctgcagaaatac
atcgaaatctatgttcagaaagtgaatcccagtcggttgcctgtggtgatcggtggtttg
ttggatgtagactgttcagaggatgtcatcaagaacctgatcatggtggtcagaggacag
ttttccaccgatgagctggtggacgaggtggaaaagaggaacaggttgaagcttctgttg
ccatggctggagtcgcgtattctcgagggatgtgaggaaccagctacccacaatgcacta
gccaagatctacattgacagcaacaacacgccggagcgcttcctgaaggagaacccgttc
tacgacagcgccgtggtcggccgctactgcgagaagagagacccccacctggcctgcgtg
gcgtatgagagggggcagtgcgacctggacctcatcaaagtttgcaatgaaaattcatta
tttaagagtgaagctcggtatcttgtacgacgaaaagatccggagctctgggccaaagtg
ttggaggaagacaacccgttcagaagacaactcatcgatcaggtggtgcagacagctctg
tcggagacccaggacccagaggaggtgtcggtcacagtcaaggcctttatgactgcagac
ctaccaaacgagctgattgagttgctggagaagattgttcttgataactctgtcttcagt
gaacacagaaacctccagaatctgctgattttaacggctatcaaggccgaccgcactcgt
gtgatggagtacatcaacaggctagataactatgacgctcctgacattgctaacatcgca
attagcaatgagctctttgaagaggcgtttgccattttcaagaagtttgatgtcaacacc
tcagccattcaggttttgattgagcacatagggaacttggaccgagcctatgagtttgcg
gagcgctgtaacgagcctgcagtgtggagtcagttagccagagctcagctgcacagggac
ctcgtcaaggaggccatcgactcctacatcaaagccgtggatccatcagcgtacatggag
gtggtcaatgcagccagcaagaacaataactgggaggatttggtgaagttcctgcagatg
gctcgtaagaaagccagagagtcgtatgtagagacggagctgatttttgctctggctaaa
acgaaccgtctggctgagctggaagaatttgtcagtgggcccaataatgctcacattcag
caggtgggagacagatgttacgaggagggaatgtacgaagcggccaaacttttgttcaac
aacgtgtccaactttgcccgacttgcgtctacattggtccaccttggggagtaccaggca
gccgtggacagcgccaggaaagcaaacagcactcggacgtggaaggaggtttgctttgcg
tgcgtcgacggcgaggagttccggttggcgcagatctgcggccttcacattgtgatccac
gccgacgagctggaggacttgatcagctactatcaggaccgcgggtactttgaggagctc
atcgctctgctggaggcggcgctgggcctggagcgcgcccacatggggatgttcacagag
ctcgccatcctctactccaagttcaaacctcagaaaatgagggaacatctggagctcttc
tggtcaagagtcaacatcccaaaggttcttcgtgcagctgagcaatctcatttatgggca
gagctggttttcctttatgataaatacgaggagtacgacaatgctgtcatcactatgatg
aaccatgcaacagatgcatggaaagaaggcctgttcaaagacataattgccaaggtcgcc
aacgtggagttatactacaaatctctttctttctacctggaatacaaacctctgctcatt
aatgacctgctgactattttgtctccccggttggatcataacagagctgtcagctttttc
tccaagatgaatcagctaaagctggtcaagccctacttgagatcggtccagaatcacaac
aataaggccgtcaatgaagcgctcaacaacttgctaacggaggaggaagactaccagagc
ctgagagcctccatcgatgcttacgataactttgacacaatcgacttggctcagaggtta
gagaaacacgaactgatcgagttcaggcgtatcgctgcttatctgtacaaaagaaacaac
cgctggaggcagagtgtggagctttgcaagaaggacaagctatacaaggatgccatgctc
ttcgctgcagagtcaaaggatgccgagctggcagagactctgctgcagtggttcctggag
gaagacaggaaggagtgctttgccgcctgcctgttcgcctcctacgacctcctccatcct
gatgtggtgctcgaactggcctggaggcacaacataatggactttgccatgccctacttc
attcaagtcacgagagagtacctcactaaggttgatgaatttgcagcaaaggtgatggtg
gacaaactggaggaggcagaaagccagaggaaaactgaggacgacgtgaaagagcctcag
ccgatggtgtttggccagcagctgatgctgacttcagctgcctctcctgtggcggctcag
ccagcgtacccggcttacggcttcccccctgccgccgccgcagccgcagccgcagccgca
gccgcagctcctcctgctgccgcaggttatcccgcccagccagcctatggcttcaacatg
taa
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