Xiphophorus hellerii (green swordtail): 116729420
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Entry
116729420 CDS
T07363
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xhe04131
]
116729420 (vps13a)
Membrane trafficking [BR:
xhe04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
116729420 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
116729420
NCBI-ProteinID:
XP_032433819
LinkDB
All DBs
Position
12:complement(15668910..15714397)
Genome browser
AA seq
3278 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDSSQLKLGIWGGDAVLKNLEIKENALSQLDLPFKVRAG
HIGRLELKIPWTDIYNQSVEATLDGVYLLIVPTASIKYDAEKEEKQLQEARQRDLDRIEE
TKLKAAEQENTKLEKQDTFVEKLVTQVIKNLQVKISNIHVRYEDDITNPNCPLSFGVSLK
NLSLQTADNYWKPSLLDEHSKLFFKLVQLNNLFAYWNVNSVLFSNHSPDEALRCLQNSME
IKPSVPVSHDFIFRPISANAKLRMNPRSDVDFSSPKVDLMVNLSEVAIELNKPQYISILE
LLGSVDMMSRNLPYRKYRPQVHVHRNARIWWKYVITGILEVDVKPHLHMWSWQHIRCHRE
TVKCYRGLYKKKITSKKPSVELLEKLEATQKSLDIFNITLARQQAEVEASKAGLRIYRPG
KQMEEEESQGWFGWMWNWGGEAEAQTKEVKTGTFDGLFTVDEKAKLYTAIGYSETAANPN
LPKNFEAMKVNFHMEKLSVSIKDQKDKNEIIKLTVGELKSTLTQRPGAQAIKVTAQLSLF
EVTGLATKRPAPTLLSSRKAATGAGTPLFCILFETNPLDDSANQRLHVESQPLEIIYDAI
TVNNMSEFFRPPDDLQLDELTNATLMKLEQFRDRTSTGLLYVIETQKVLDLKVNLMASYV
IIPQTGFYDGTQNIVLLDLGHFKMSSSSKKDLPQLSVGSSKIEDIMSRAYDNFDVQLSSL
QLLYSKPDGDWKRARKQKRSPLHILEPVDMKVVVSRAMVVSDTRMAKYKMFGELPLLSLR
ISDNKLRNVLELVDSIPLPESRPAARSTTTSIRPKQSFTPQLTARKHLSLVDQRSSIIFE
SCESISIASLGSQEDLFYDAPSSPIGEKAFFPDNPMPLRYADLSKRTNLIKEDPQKNMTD
FIMRFEINELSVQLCRLSGAQEIVVLQLDIEGLGTELKLRTFDMTSNTFLREICLKCPEY
MDSEDKQVQLITTLDNSEVDLLTLEYIKADKNGPEFKSQHNNTEQLIKVTFSSLDVHLHT
EALLNTMSFLSNLLPPSSKKEGGPEELPAIPEEEEAEAGKEEEKKGETAVTKKKTSKSSK
FADVVNLRVRADLRCLKVFIRGQKARISEISIEGLVTDVMMRKKNMEILANLKSIVILDC
NKDALYKKAVSIADKQVFAFRMLNHTDATEGDAYLDMSNVDTSVTLEVGCIQVIFLNKFV
SSILVFINNFQEAKEALAEVTVQAAEKAASGVKELAERSTRIALDVHFNAPVIFLPQSSS
SSNVIVADLGFLSVKNRFIKQPFKSDATIPPVVDKMIMKLTDLKMYRTTYKNGKFEGETQ
LLKPVSLDLEIQRNLSANWYHSIPDIEITAHLKPMSLILCQDDMIVVLRTLSENLSEKSE
AVQPPAVLPTTDHSSDSVSNKESQGSGTTGPTSSGNTVVIAAVVETQKHSKLKTTLKLNF
KFDSMTLVLFIPKENVIQHLDCHDEQLKLAEFTLGTISTSVHMFSDSSMKASVRLSTCLL
DDKRPRIKMVTSRMMELRPGAEQNMMVEVNYRQGLDGTNIDTVVQDVYLCASMEFLLTVA
DIFLKATKEGFAQGPQAKGNTGAGEKKNINSSVTSKDLSAGPVSKMEMTVVVRNPEIVFV
ADLTRADAPALVMTTYCEVSMISGAESTMTASIKDLKVVACPFLREIRKNTVTTVLQPCQ
VHYRSSQPSAGPQAMEVDINALSLKVSPVIINTVITIQSALTPQAETPEELESPVPVDLW
EKRHWKELKLWFLEEEGDEDTKSLKPLIPQGESLKLTINSICVTLEAGVGHLTIPMLLAK
SSFHGDVKNWSTLINLYSELTLEVHYYNEMVGVWEPLLEPLEDETGERFKSWTLNLKMKK
KPVNNPTLSDEVDYNIPDYRTITTISSKDQLNITLSKCGLTMLNNLGAAFAEAAKQTAEC
FQKDEAPFVVKNRLGLPVSVRHSEMFSPVGKQSDRHTVRLQDGESLGMDYSVTTQSDQFS
AMTSLSEKHYYIQPAPEGHTSTSVIPLIKVGRGMYSVMHKDSGVTRFLVCQISSVEGSKY
IKIRSPFQIINHFTIPFNVFEGSTYLGKASPTEEFCVPFDSYRSELSLQPTTEETAEEDG
KQFDVSEGFSYEDFFNHNPATRLQQKCRRRGDESGTMMIINMVPVKDTVTCKETGDIGEN
CDIPFVLHLWPSVLLRNLLPYPIAYKLKQQGSKDSGPEVTLGPGHSAQLHTAVINQSTLD
LRLLDYLAQDWSCEYRLQSEQEEITFIVFQSLRVDEEDVGDVLERKKPELDIAMHVQYDP
GQTVVAIHSPYWMMNKTGRLLQYKADDIHRKHPLDYDMPLLFSFKPRNFLRNNKVRLMIS
DSELSDDFSLDTVGSHGDVKCKGRYKDYLVGVKIDASSFSLTRIVTFVPFYMLVNRTKHR
VFVCEEGLENWTQAEPEQSAVPFWPENDTKRLKIKLEGCLAPPQTINFTKRENCLLLHLD
NSVGGIIVDVNLSDHSATIRFSEYHDGAAPFLLINHTNERLQFRQSTLKETSWVPDELLD
LSSSGEEDSSLKELEWENLEAGKAVYYTWTEPTGSRELSWKHGRYHGELKVEKELLDEKT
NRERKLYVIPFYEGLQRVVVFTENQRIFKKLLENESLRHAEQEVILWLHDMGISLVNNNN
SQEISFIGITSSDIVWEIKPKKKGRWKTLNTEEVEMIENRFKEYCDSSPIDNCIANMENN
FQVCFTPSGTDMHMMQPVAAPLRRHHLPGVKVEYSISPRQRSYRVQIHRIQIQNQIPGAI
FPFVFYPIKLPKSIAKDTEPKPLIDLSIVTRTAGHTDISRIKYFKVLIQEMDLKLDLGFL
YAILDFVTPENAGVMTSEQEVELFAKDIEYIRTELNHVSSTDTSPISLYEQFHISPIKLH
LSFSLSTGGEDGLKEKRETELIPIQSLNLLLKSIGATLTDVQDVVFKLGFFELNFQFYTT
QQLQSEVIRHYSKQAIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFFYEPYQGAIQGPEE
FIEGMTIGVKALVGGAVGGIAGAASRITGTIAKGVAAITMDEEYQQKRREAMNKQPTGLK
DGLARGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAIARPTGGIIDLA
SSTFQGIKRAAETSQDVISLRPPRFIHEDGVIRPYKEREGVGSQMLQTIENGRFAKYRYF
AHAKINDSDFFMITKRGIFFVTKGTFGQLTCEWQYLFEEFTMDPKIVGGRRLRIEAKERV
KSVFHAKEFGKIINFKTPEIAQWVLNKLEDARDRLPKY
NT seq
9837 nt
NT seq
+upstream
nt +downstream
nt
atggtctttgaaagtgtggtcgttgacgtcctcaaccgttttttaggggactacgttgtg
aaccttgacagctcgcagctgaagcttggcatatggggaggtgatgctgtgctgaaaaat
cttgaaataaaggaaaatgccttgagtcaacttgatctcccttttaaagtgagagctggt
cacataggacgtctcgagttaaaaattccatggacggacatctacaaccagtcagtggag
gccacgctagatggagtctatctgctaatcgtccccacagcaagtataaagtatgatgca
gaaaaggaggagaagcagctacaggaggctcgtcagagggatcttgatcgaatagaggag
acaaaactcaaggctgcagaacaagagaacacaaagctagagaaacaggacacctttgtt
gaaaagcttgtcacacaagtgatcaaaaacctacaggtcaagatctctaacatccatgtt
cgctatgaggatgatatcactaatccaaactgtcccctgtcatttggagtgtcgcttaaa
aacctcagccttcaaacagctgataattactggaaacccagtttgctagatgaacactcc
aagcttttcttcaagttggttcagctgaacaacttgtttgcctactggaatgtcaactcg
gttctcttctctaatcacagtccagatgaagccctgcgatgtcttcagaacagcatggag
atcaaaccctctgttcctgtcagccatgacttcatctttcgtcctatatccgcaaatgca
aaactgcgaatgaatccaagatcagatgtggatttctcttctcctaaagtggacctgatg
gtcaacctcagcgaagtggctattgaactcaacaaacctcagtacattagcattttggag
ctgctgggctcagtggatatgatgtcacgaaatctgccatacaggaagtacagaccccag
gttcacgttcacagaaatgctcgcatatggtggaaatatgtgatcacaggcatcttggag
gtggacgtgaagcctcatctccacatgtggtcatggcaacacatccgatgccaccgggaa
acagtgaagtgttacagagggctctacaagaagaagatcaccagcaaaaagcccagtgtg
gagctgctcgaaaagttggaggctacacagaaatctttagatattttcaacatcacattg
gcgagacaacaagctgaagtggaggcgagcaaagcaggactgcgtatttatcgtccaggg
aaacagatggaggaggaggagtctcagggttggtttggctggatgtggaactggggagga
gaggctgaggcacagaccaaggaggtcaaaactggaacatttgatgggttgtttactgtg
gatgagaaagccaaactttacactgccattggatacagtgaaactgcagctaaccccaac
ctgccaaagaactttgaagcaatgaaggtaaatttccacatggaaaaactgtctgtgtcc
atcaaagaccagaaggacaaaaacgaaatcatcaaactgactgtgggggagctcaagtcc
acactcacacagagacccggagcacaagccattaaagtcacagcccagcttagtttgttt
gaggtcactggtctggccactaagcgtccggcaccgaccctcctttcatcaagaaaggcg
gccacaggagcaggaaccccgctgttttgcatcctgtttgagaccaacccgctggatgac
agtgccaaccagaggctccacgttgagtcacaaccactggagatcatctatgatgcaata
acggtgaacaacatgtcagagttcttcaggcctccagatgacctgcagctggatgagctc
accaacgccaccctgatgaaactggagcaattcagagaccgcacatccactggtttattg
tacgtgatcgaaactcagaaagttcttgacctgaaggtgaacttgatggcctcctacgtc
atcattccacagaccggcttttacgacggaacccagaacattgtgcttttggatctcggt
catttcaagatgtccagttcaagcaagaaggatctgccgcagctgtcagtgggttccagc
aagattgaagacatcatgtccagagcatacgacaacttcgacgttcagctcagcagcctg
cagctgctttacagcaaaccagatggtgactggaaaagagctcgcaaacagaaacggtct
ccactccacatcctggagcctgtggatatgaaagtggttgtcagcagggccatggttgtg
agcgacacacgtatggcaaagtataaaatgtttggtgaactcccgctgttgtctcttcga
atttctgacaacaaactccgaaatgttctggagctggtggacagcatcccactgcctgag
agcagacctgcagcccgcagcaccactacttctataaggccgaagcagtcattcactcct
cagctcactgcgagaaaacacctgagtttagtcgaccagcgttcctcgatcatttttgag
tcctgtgagagtatcagcatcgcctctctgggatcacaggaagatttgttctatgacgcc
cccagctctccgatcggagagaaggcgttcttcccggacaatcccatgccgctacgctac
gccgatttaagcaaaagaacaaatctcattaaagaagatcctcagaagaacatgactgac
tttataatgagattcgagatcaatgagttgtctgttcagctctgtcgtctgtcaggagct
caggagatcgttgttctccagctggacatcgagggtctgggcactgagctgaagctgcgt
accttcgacatgacgtcaaacacattcctgcgcgagatctgcttgaagtgtcccgaatac
atggattctgaagacaagcaagttcagctgatcaccactttagacaactcagaagttgac
cttctcaccttggagtatatcaaagcggataaaaatggtcctgagtttaagtctcagcat
aacaacacagagcaactcattaaggtgacattttcatctttggacgttcatctgcatacg
gaggctctccttaacaccatgagcttcctcagtaacctccttcctccatccagtaagaag
gaaggagggccagaggagctgcccgccatcccagaggaagaggaggctgaggcaggaaaa
gaggaggagaagaagggggaaacagctgtaaccaagaaaaaaacctctaaaagctcaaag
tttgcagacgtggtgaatcttcgtgtgagagctgatctgcgctgcttgaaggtgttcatt
cgaggacagaaagctcggatatcagagataagtattgaaggtctggttactgatgtcatg
atgaggaagaagaacatggagatcctagccaacctaaagagcattgtgatcctggactgc
aacaaggacgcgttatacaagaaggctgtctctattgcagataagcaagtttttgccttc
aggatgttgaaccacacagatgcaacagaaggagatgcctacctcgacatgtctaacgtt
gacacgtctgtcacactagaagtcggctgcattcaggttattttcctcaacaagtttgtc
tcctccatcctggtattcattaataatttccaggaggcgaaagaagccctcgctgaggtg
acagttcaggctgcagaaaaggcagcctctggtgtgaaggaactggcagagagaagcact
cgaattgctcttgacgtccacttcaacgcacctgtgattttcctcccccagtcttcctcc
tcttcaaacgtcattgttgctgatcttggcttcttgtccgtaaagaaccgtttcatcaag
cagccgtttaaaagcgacgctacaatcccgccggttgtggataaaatgatcatgaaactg
actgacctcaagatgtacagaaccacttacaaaaatgggaaatttgaaggcgagactcag
ctgctgaagccggtcagcctggacctggaaatccaacgaaatctttcggctaattggtac
cacagcatccctgatatagagatcactgctcatcttaagcctatgagtctgatcctctgc
caggatgacatgattgtggtcttgaggactttgagcgagaatctgtcagagaagtctgaa
gctgttcagcctccagctgttctgcccaccactgaccactcctctgattctgtatccaac
aaagagtcccagggctcaggaaccaccggacccaccagctcaggcaacacggtggtgata
gctgctgtggtcgagacccagaaacacagcaagctcaagacaacgctcaagctgaacttc
aagttcgactccatgacgctggttctgttcatccctaaagagaacgtgatccaacacttg
gactgtcatgatgaacagctgaagttggcagagtttactctgggcaccatctccacttct
gtccacatgttctctgacagctccatgaaggcatcagttcgactctctacatgcctccta
gatgacaagagaccaagaatcaagatggttacctcaaggatgatggaactgcggcccggc
gccgagcagaacatgatggtggaggtgaactaccgacaggggcttgatggtaccaacata
gacacagtggtacaggatgtgtacctgtgtgccagcatggagttcctgctcacagtggca
gatattttcctcaaagccaccaaggagggttttgctcaggggccacaagccaaaggcaac
actggtgctggagaaaagaagaacattaattcctctgtcacgtctaaagacttgtctgca
ggtccggtgtcaaagatggagatgaccgttgtcgtgcgtaacccagagattgtgtttgtt
gccgacctgacgcgtgctgacgcccccgccttggtgatgaccacatattgtgaagtgtca
atgataagtggagcagagtcaacaatgactgcatccatcaaagatctaaaggttgtggca
tgtcccttcttaagagagattaggaagaacactgtgaccaccgtcctccagccatgtcag
gttcactatcggagttctcagccttcagcgggccctcaggcaatggaagttgatattaat
gctctctctctaaaggtatctcctgtcatcatcaacacagtgatcaccatccagtcagcg
ctgacgccccaggctgagactcctgaggagctggagagccccgttcccgtggacctgtgg
gagaaacgacactggaaggagctcaagctttggttcttggaagaggagggggatgaagac
acaaagtctttaaagccactcattccacagggagaatccttaaagttgaccataaattca
atctgtgtgactctggaagctggagtgggacacctcaccatccctatgcttctcgccaag
tcctcttttcacggagatgtgaaaaactggtccacactcattaacctctacagcgagcta
actcttgaggttcactattacaatgagatggtgggtgtctgggagccgctgttggagccc
ttggaggatgagacaggcgaacgtttcaaatcttggactctaaacctgaagatgaagaag
aagccagtgaataaccctactttgtcagatgaagtggattacaacattccagactatagg
acaataactacaatcagcagtaaagaccagctcaacatcacgctctccaagtgtggactc
accatgctgaacaacctgggcgcagcatttgcagaagctgccaagcagactgcagagtgt
tttcaaaaggatgaagctccctttgtggtgaaaaacaggctgggtcttcctgtctctgtg
cggcacagtgagatgttttcccccgtcggcaagcagagcgatagacacactgtgagactg
caggatggcgaaagccttgggatggactactcagtcacaacacagtcggatcagttctca
gctatgacctcgctgagtgaaaaacattactacatacagcctgctccagagggccacact
tccaccagtgtgatccctctgatcaaagtgggacggggtatgtacagtgtcatgcacaaa
gactcaggagtcactcggttcctcgtctgtcagatttcctctgtggagggcagcaaatac
atcaagatccgctctccttttcagattatcaatcattttacaataccattcaacgttttt
gagggatcgacatatctgggaaaagcttctccgactgaggagttctgtgtaccatttgat
tcatacaggtctgagctgagcctacagccgacaacagaggagaccgccgaagaagacgga
aaacagtttgacgtgtcagagggcttcagctacgaagacttcttcaaccataacccagct
actcgcctacagcagaaatgccgtcgtcgtggagatgagtctggcaccatgatgatcatc
aacatggtgccggtgaaagacacagtgacgtgcaaggagacgggagatatcggagaaaac
tgtgacattccattcgtgcttcacctctggccctctgtcctgctccgcaatctgctgcct
tacccaattgcctacaaattaaagcaacaggggagcaaggacagtggccctgaagttacg
ctgggtccaggccactctgctcagcttcacactgcggtcatcaaccagtcaactcttgat
ctccggcttctggattatttggctcaggactggtcctgtgaatacagactccagagtgag
caggaagaaatcaccttcattgtgttccagtctctacgcgtcgatgaggaagatgtagga
gatgtgttagaaaggaagaagcctgagttagatattgcaatgcatgttcagtacgaccca
ggccagactgttgtcgccatccactctccttactggatgatgaataagacagggaggttg
ctgcagtacaaggctgatgatattcaccgtaaacaccctctagactacgatatgccgctt
ctcttctccttcaagcctcgcaattttctgagaaacaataaggtccgccttatgatctca
gacagcgagctgtcagacgatttctctctcgacactgttggtagccatggcgatgtgaaa
tgtaaaggcagatacaaagactatctggttggtgtgaagattgatgcgagcagtttcagt
ctgacccgcatcgtgacctttgtaccgttttacatgctggtcaacagaaccaagcacagg
gttttcgtctgcgaggagggcctcgaaaactggactcaagcagagccagaacagtcagct
gttcctttctggcccgagaacgacaccaagcgtctgaagatcaaattagaaggatgttta
gcgcctcctcagacgattaacttcaccaaacgagagaactgcttgttgctgcatctggac
aactctgtgggcggtatcatcgttgatgtaaacctgtcagatcactcggccaccattcga
ttctctgagtaccatgatggggcggcccctttcctcctcatcaaccatacaaacgaacgt
cttcagttcaggcagagcaccctgaaagagacctcgtgggtgcctgacgaactgcttgac
ctttcctcctcaggggaggaggacagctctctgaaggagttggagtgggaaaatctagaa
gctggaaaagctgtgtattacacctggaccgagcccaccgggtccagagagcttagctgg
aaacatggacggtaccatggagagctcaaggtggagaaggaactgcttgatgagaagaca
aacagagaaaggaaactttatgtgattcccttttatgaaggtctccaacgtgtcgtggtg
ttcactgagaaccagcgtatcttcaagaagcttttggaaaatgaaagcttgcgacatgct
gaacaggaagtcatcctgtggctgcacgacatgggcatatctttggtcaacaacaacaat
agccaagagatttcttttattggaatcacaagctctgacattgtgtgggagatcaagcct
aagaagaaaggtcggtggaaaaccctgaacacagaagaagttgagatgatagagaatcgc
tttaaagagtactgtgattcctcgccgattgacaactgcattgctaacatggagaacaac
tttcaggtctgttttacgccctctggtacagatatgcacatgatgcagccagtggctgct
cctctgaggcgacaccacctccccggggtgaaggtggagtacagcatctcacctcgacag
agatcctaccgtgtccagatccaccggatacagatccagaatcagataccaggagccatc
ttccctttcgttttttaccccattaaactccccaaatcaatcgccaaggacacagagcca
aaacctctaattgatctcagcattgttaccagaactgctggacacaccgacatctctcgc
atcaaatacttcaaggttttgattcaggagatggatttaaaacttgacctgggctttctg
tatgccatcctggactttgttactcctgagaacgccggcgtcatgacttcagaacaggag
gtggaactgtttgctaaggacatagagtatataagaacagagctgaaccatgtttcttct
actgatacgtcacccatcagcctctatgagcaattccacatttcccctatcaagttgcat
ttgagtttctctctgagcacaggaggagaagacggcttaaaggagaagagagaaactgaa
ctcatccccattcagtccctcaacctgctgctgaagagcatcggagcaactctcactgat
gtgcaggacgtcgtcttcaagctgggattctttgagctaaacttccagttttacaccact
cagcagctacaatcagaggtcatcagacattactccaagcaggctattaaacagatgtat
gtgctggtgctgggcctggacgtgcttggaaatccctttgggttgataagaggattgtca
gagggcgtcgaagcgttcttctatgagccctaccagggagccatccaaggccctgaagag
tttatagaagggatgaccatcggtgtgaaagctctggttggaggagctgttgggggtata
gcaggcgcagcctctaggataacagggaccatcgcaaagggagtcgctgcaataaccatg
gatgaggaataccagcagaagaggcgagaagccatgaacaaacagcctacgggcctgaaa
gacgggctggccagaggcggaaaaggattggtttctggattcgtcagtggaatcacaggg
attgttaccaaacctataaaaggggcgcagaaagagggagcagcgggcttcttcaaaggt
gttggcaaaggtttggtgggcgcgatagctcgaccgacaggaggcattatcgacttggcc
agcagtacctttcagggaatcaaaagggcagcagagacctctcaagatgttatctctctc
cgtcctcctcgcttcatacacgaggacggtgtcatccgaccatataaggagagagagggc
gtcgggagtcagatgctccagacaattgaaaacggacgttttgccaagtatagatacttt
gctcatgccaagattaacgattcagacttcttcatgatcaccaagagaggaatatttttt
gtgactaaaggcacctttggtcagctgacctgcgagtggcagtatctctttgaagaattc
acaatggacccaaagattgttggtggacgtcgactgcggattgaagccaaggaaagagtg
aaatcagtcttccatgccaaagagtttgggaagatcataaacttcaaaactccagagatt
gcccagtgggttctcaacaaattggaggatgccagagatcgtttacctaaatactaa
DBGET
integrated database retrieval system
