Xiphophorus hellerii (green swordtail): 116729431
Help
Entry
116729431 CDS
T07363
Symbol
thoc5
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116729431 (thoc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116729431 (thoc5)
03041 Spliceosome [BR:
xhe03041
]
116729431 (thoc5)
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
116729431 (thoc5)
Spliceosome [BR:
xhe03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116729431 (thoc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
116729431
NCBI-ProteinID:
XP_032433842
LinkDB
All DBs
Position
12:17840325..17850915
Genome browser
AA seq
683 aa
AA seq
DB search
MSTDALKKRKSKVLRGEGGTPETKRGRGEVDQDVRVYNEEGELDGRDPEQDYLQYKESCE
SLATVMSEIQELKANGAKEGSAEVELRRMQGCIHFMNLKKLNRLAHMRLKRGRDQTHEAK
QKVDVLHLQLQNLLYEVMHLQKEISKCLEFKSKHEEIDLVSEEEFFQDAPPEISRPSLTK
NDPHQLTLARLDWELEQRKRLAEKYEESQSTKEKIQKTIEVKKEHLISLQPGLNAIMQAS
LPVQEYLSMPFEKTQKQAEIARHLPPPLYVLFVQANAYGQACDKNLSVSICGDVDEARAL
SKPPDDSQDDESDSDAEEEQEKTKRRRPTTGGQLDDKRREMLKRHPLSLSLDLQCKDGST
LHLYFFYLMNLNILTVKTRVSTSTDLNAAISAGELLKSETLLSCLYTSDQGRETPNPANH
YQFDKVGIVSFADYVDELGYPYMWVQNLGGLHFPTESSEGVLVGSSLSASHMETTMKLLR
GRVLSRLALHKQFASLEHNIIPISAECQHLFPAKIISRLARWTTITQQEYLELAYTHHVT
EAGLARESDLYFMTVVERGTARLHAAVVLSPRYPEISPLFSLSLNWKGECSGRSDDNLRA
MESEVNVFKNELQGPKPGHQLLTNQIARLCVCLDVYLETEVQDDSVEGPREFPREKMCLR
TVRGPNRLKPFKYNHPQGFFSHR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaccgatgccttaaagaagagaaagtcgaaggttctccgcggtgaaggagggacc
ccagagacgaagcgaggccggggggaggtggaccaggacgttcgtgtctataatgaggag
ggggagctggacggcagggaccccgagcaggactaccttcagtacaaagaatcctgtgag
agtctggctacagtcatgagtgagatccaggagctgaaagccaatggtgccaaagagggg
agtgctgaggtggagctgagacgcatgcagggctgcatccacttcatgaacctgaaaaaa
ctcaaccgtttggctcacatgcgtctaaaaagagggcgagaccaaacccatgaggcaaag
caaaaggtcgatgtgcttcatcttcagctgcagaacctcctctatgaggttatgcatctt
cagaaggagatcagcaagtgtctcgaattcaaatccaagcatgaagaaattgacctggtg
agcgaagaggagttcttccaggatgctccgccggagatttccaggcccagcctgaccaaa
aatgacccccaccaactgacactggcaagactggactgggagctggaacagaggaagagg
ttggcggagaaatacgaggagtcacaatccacaaaggagaaaattcagaagaccatagag
gtaaagaaggagcatctgataagccttcagcccggactgaatgccatcatgcaggcgtct
ctcccggtgcaggagtatctgtccatgccgttcgaaaagacccagaagcaggcagagatt
gcccgtcaccttcctcctccgctctacgtgctgtttgttcaagcaaatgcttacggccaa
gcctgtgacaagaacctgagtgtgtcaatctgtggtgacgtggatgaggccagggccctt
tccaagcctcctgatgattctcaagatgatgagagtgattcagatgcagaagaggagcag
gagaaaacgaagagaaggaggccgaccacaggtggacagctggatgacaaaagacgagag
atgctaaaaagacaccctctgtctctcagcttggaccttcagtgtaaagatggcagcact
ctgcatctttacttcttctacctgatgaatctgaatattctgactgtgaagacaagagtc
tctacctccacagacctcaacgcggccatcagcgctggagagcttcttaaatcggaaacg
ctcctgagctgtctctacaccagtgaccaaggaagagaaactcccaatccagccaatcac
taccagtttgacaaagtcgggattgtttcctttgctgactatgtggatgagctgggatat
ccctacatgtgggtccagaatctgggaggacttcatttccccactgaatcatcagagggt
gttctggtgggcagttctctgagcgccagccacatggagaccaccatgaagctgctgagg
gggcgagtcctgtcccgcttggctctgcacaaacagtttgcttctttagaacacaacatc
attccgatctccgccgagtgtcagcacctgtttcctgccaagatcatctcccgtctggct
cggtggaccaccatcactcagcaggagtacttggaactggcctatactcatcatgtaact
gaagctggactggccagggagtcagacctgtactttatgacagttgtcgaaagaggaaca
gcgcgtcttcacgccgctgtggtcctgagtccccgctacccagagatctctcctctgttc
tctctgtccctcaactggaagggagagtgcagcgggcgcagtgatgacaacctaagagcc
atggagagtgaagtgaatgtgttcaaaaacgagctacagggcccaaagcctgggcatcag
cttctgaccaatcagatcgcacgcctgtgcgtctgcttggacgtgtatttggagacagaa
gtgcaagatgacagtgtggagggacctcgagagttcccacgagaaaagatgtgtctgcgt
actgtcaggggtccaaaccgcctgaagccattcaagtacaaccaccctcagggcttcttc
agtcaccgttag
DBGET
integrated database retrieval system
