Xiphophorus hellerii (green swordtail): 116729440
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Entry
116729440 CDS
T07363
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03030
DNA replication
xhe03410
Base excision repair
xhe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116729440 (pole)
03410 Base excision repair
116729440 (pole)
03420 Nucleotide excision repair
116729440 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xhe03032
]
116729440 (pole)
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116729440 (pole)
Enzymes [BR:
xhe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
116729440 (pole)
DNA replication proteins [BR:
xhe03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
116729440 (pole)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
116729440 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
Sigma70_ner
APP_N
zf-RRPl_C4
Motif
Other DBs
NCBI-GeneID:
116729440
NCBI-ProteinID:
XP_032433868
LinkDB
All DBs
Position
12:17510767..17528450
Genome browser
AA seq
2294 aa
AA seq
DB search
MVLQNSGRYKSDRGQSGANQENQDDGSSMSALKRLERSQFTDDMDARFGFDRMKEPGEKT
GWLINMHPTEILDEDKRMISAVDYYFIQEDGSRFKVALPFKPYFYIATKKNCEREVISYL
SKKFQGKVAKLEILPKEDLDLPNHLVGLKRSYIKLSFNTVDDLVKVKREISPAVRKNRER
EQSNDAYTSMLSSALSGGSVISADEDGTLKSIADQLDNIVDMREYDVPYHVRVSIDLKIH
VAHWYNVRYRGSAFPPEIVRRDDLVERPDPVVLAFDIETTKLPLKFPDAETDQIMMISYM
IDGQGFLITNREIVSENIEDFEFTPKPEYDGPFTVFNEDDEAALIQRWFDHVQETKPNIF
VTYNGDFFDWPFVETRAALHGLSMHREIGFQKDNQGEYKSSQAIHMDCLRWVKRDSYLPV
GSHNLKAAAKAKLGYDPVELDPEEMCRMATEEPQTLATYSVSDAVATYYLYMKYVHPFIF
ALCTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIVFPNKQEQIFNKLTDNGHVLDSETY
VGGHVEALESGVFRSDIPCRFKMNPAAFDFLLQRVERTMRHAVEEEEKIPLEQVTNFNEV
CDEIKKKLTSLKDVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCASCDFNKP
GATCQRRMAWQWRGEIMPASRSEFHRIQQQLESEKFPPLFPNGPPRAFHTLNREEQAKHE
KKRLADYCKKAYKKTHVTRLEERVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKL
STAQDNGDAAEVKRCKNMEILYESLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCFTG
ANIITQARELIEQIGRPLELDTDGIWCVLPNTFPENFVVKTSNDKKPKVTISYPGAMLNI
LVKEGFTNDQYHELVDPTALTYNTRSENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVF
NEDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYASVAKVADYWLDVLYS
KAANMPDAELFDLISENRSMSKKLEEYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYV
ISRKPEGSPVTERAIPLAIFQAEPSVKKHFLRKWLKMPSLHDLDIRTILDWSYYIERLGS
AIQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIYKQKKISELFTSEGKRQIGHQP
LEAGQAADMEDFGAAPRPLQPAILISTKRKRASQGEDSQVESQDVELTQSWREILGPPPP
MGKTREERLVWLRYHKKKWELQLRQRKEKKKRRKLLDGEPQPVGGGVIRGGPSTGLGNFL
RRTARSILDMPWQIVQIAETNHPGLYKLWAVIGNDLHCMKLNIPRVFYVNQKVPKQDEGG
VAYRKVNRMLPRSNIVYYLYEYSVPEDMYQNHINEINADLSAPDIEGVYETQVPLLFRAL
VQLGCVCMVNKHIVRDLAGRETDSFDLEHLDMRSLAQFSYLEPGSVRHMYLYHHSQGQKA
LFGLFIPSQRKASVFILDTVRSNQMPNLSNVYTAERTALLEKTSEELLPPEKHTFEVRAE
NDIKAVSRALQRILLNYKDERRGPTLIAVQSNWELQRLAAGMPVLEEFPVVPVHVVDEIN
YNVLDWQRHGARRMIRHYLNLDSCLSQAFDMARYYHLPVGNLPQDVSIFGSDLFLARHLR
KHNHLLWLSPTARPDLGGKEADDSRLVMENDEKGSVEINSQGCYSTACVELDLQSLAVNT
ILQSQHVNDMEGGASLGVSFDVIQQASLEDMMSGNQGASALASYDETALCSNTFRILKSM
VVGWVREITQYHNVYADNQVMHFYRWLRSPSSLLYDPALHRTLHNMMKKVFLQLVAEFKR
LGSTVVYGNFNRIILCTKKRRIDDAIAYVEYITKSIHSREIFHSLSISFSRCWEFLLWMD
PSNYGGVKGKLPSSILYGEEGAKQKKRKQGEEDEEGSEDEDEDDAEEDDGDAETDEVEEL
IESNWNVMHYLPQTASCQKYFLMIVSAYIAAVYHSMKEELRRNAPGATPVKRRAGSQASQ
QAVGDLSALPGMISFSQEYVASELTQNIFTITQKIQKKVTGTRNVTQTSEMFPVLPGSHL
PLNNPALEFVKYVCQVLSLDANIVNQVNKLKRDLLRLVDVGEFSEEAQFRDPCNSYILPE
VICHHCNFCRDLDLCKDPTVAQDGSVLPQWFCSNCQMQYETESIETALVDALQKKLMSYT
LQDLVCTKCKGVKEANMPLYCACAGNFDLTFSAKSFSEQTAVFRNIASHYNMRFLGETID
WLLEMSPQIGQSRH
NT seq
6885 nt
NT seq
+upstream
nt +downstream
nt
atggttttgcagaacagcggacgatacaaatcggacaggggccaaagtggagcaaaccaa
gaaaaccaggatgatggatcctccatgtcggcgctcaagcggctggagcgcagccagttc
accgacgacatggacgcccgcttcggcttcgacaggatgaaggagcccggggagaaaacg
ggctggctgatcaacatgcaccctactgagattctggatgaagacaaaaggatgatcagt
gccgtggactattattttatccaggaggacgggagcagattcaaggtggctcttcccttc
aagccttacttctacatagctactaaaaagaactgtgagagagaggtcatctcatatttg
tccaagaagttccaaggaaaagtggcaaaacttgaaattctcccaaaggaggacttggac
ctgccgaaccatctagttggactgaagagaagctacatcaagctgtcatttaacacagtg
gacgatctagtcaaagtcaagcgtgagatttctccagccgtacgcaagaacagagagagg
gagcagtccaacgacgcctacacatcaatgttgtcaagtgctctgtcaggaggcagcgtg
atttcagccgatgaggacgggacgttgaagagtatcgccgatcagctggacaatatcgtg
gacatgagagagtatgatgtcccttatcacgtccgagtgtccatcgacctcaagattcat
gtggctcactggtacaacgtccgataccgaggcagtgccttcccaccagagattgtgcga
cgagacgatctggtcgagcgcccggacccagttgttctggctttcgacatcgaaaccacc
aaacttcctctgaaattcccagacgcagagacggatcagattatgatgatctcctacatg
atcgacggacagggctttctaatcacgaatagagagattgtctccgagaacatcgaggat
tttgagttcacccccaagccagaatatgacggacctttcacagtttttaacgaggatgac
gaggctgctctcatccagaggtggtttgatcacgttcaagaaacaaagccgaacatcttt
gtcacctacaacggagacttttttgactggccttttgttgagactcgcgcggcgctccat
ggactgagcatgcacagggaaatcggtttccagaaggacaaccagggagagtataaatcc
agccaggccatccacatggactgcctcaggtgggtaaaaagggacagctacttgcctgtg
ggaagtcacaacctgaaggcagcagccaaggctaaactgggctatgacccggtggagctg
gacccagaggagatgtgccgaatggccactgaggaacctcagaccttagcaacctactct
gtgtcagacgctgtggccacatactacctctacatgaaatatgttcaccccttcatcttc
gccctgtgcaccatcatccctatggagcctgatgaggtgctgcgtaaaggttcaggcacc
ctgtgcgaagccttgctcatggtgcaggccttccacgccaacatcgtcttccctaacaag
caggagcagatctttaacaagctgacggacaacggccacgtcctggactctgagacttac
gtgggaggccacgtggaggcgctggagtctggagttttccgcagcgacatcccctgccgc
ttcaagatgaacccggctgccttcgactttctgcttcaaagagtcgagaggacgatgcgt
cacgccgtcgaagaggaagaaaagattcctctggagcaagttaccaactttaacgaggtt
tgtgatgaaatcaaaaagaagctaacctccttgaaggatgtcccaaacaggatcgaatgc
cccctcatctaccatctggacgtcggggccatgtaccccaatattattctcacaaaccgt
ctgcagccatcagctatggttgatgaggccacatgtgcttcctgtgactttaacaaaccc
ggggccacctgccagaggaggatggcctggcagtggagaggagaaatcatgcctgcaagc
cgcagtgagtttcaccgcatccagcagcagctggagtcggagaagttcccacctctcttc
cccaacggccctcctcgggcgttccacactctgaaccgggaggagcaggccaaacacgag
aagaaacggctggcagattattgcaagaaggcctacaagaagactcacgtcacgcggctt
gaggagcgagttaccaccatatgtcagagagaaaactccttctacgtcgacacagtcaga
gctttcagggatcgccgttatgaattcaaaggacttcacaaagtgtggaagaagaagctg
tcaacagctcaggacaatggagatgctgctgaggtgaagcgctgcaaaaacatggagatc
ctgtacgagtctcttcagctggcccataaatgtattcttaactctttctacggctacgtc
atgagaaaaggggcgcgctggtactccatggagatggctggcatcgtgtgcttcactgga
gccaacatcataactcaggccagagaacttatcgaacaaatagggaggcctctggagctg
gacactgacggaatctggtgtgtcctccccaacaccttccctgagaactttgtggtaaaa
accagcaatgataaaaaacctaaagtgaccatctcttacccgggggccatgctcaacatc
ctggtgaaggagggattcaccaatgatcagtaccacgagctggttgacccaacggcgctc
acttacaacacccggtcagagaacagcatcttcttcgaggtggacggaccgtatctggca
atgattctgcccgcctccaaagaggaagggaagaagctgaagaagaggtatgccgtgttt
aacgaggacggctcattagctgagctcaaaggctttgaagtgaagaggagaggagagctt
cagctcattaagatttttcagtcctctgtgtttgaggcattcctcaaagggaccactctg
gaggaggtctacgcatcagtggccaaggtggccgactactggctggacgtgctttacagc
aaggctgccaacatgccggatgcggagctgttcgacctgatctcagagaaccgctcgatg
tccaagaagctggaggagtacggcgagcagaagtccacgtccatcagcacggccaagagg
ctggccgagttcctgggagaccagatggtgaaagatgctggtctgagctgtcgctatgtc
atctctcggaaaccagaaggttccccagtcacagaaagggccattcctctggccatcttc
caggctgagcccagcgtgaagaaacatttcctccggaagtggctgaagatgcccagcctg
catgacttggacatccgcactatcctcgattggagctattacatcgagaggttgggtagt
gcaatccaaaaaattatcaccatccctgcagcgctgcagcaagtgaagaatccagttccc
agagtgaggcatcctgactggctccacaagaaactcctggagaaaaacgacatctacaag
caaaagaaaatcagcgaactgttcaccagtgagggcaagagacagattggccatcagccc
ctggaggctggccaagctgcagacatggaggactttggggcggcacctcgacccctgcag
cccgctatcctcatcagcaccaagaggaagcgggcttcgcaaggagaggacagccaggtg
gagtcccaagatgtggagctcacacagtcctggagggaaatcctgggacctccacctcca
atgggaaaaacgcgggaggagcgactggtgtggctgcgctatcacaagaaaaagtgggag
ctgcagctgaggcaaaggaaggagaagaagaagagaaggaagctgctggatggagaacca
caaccggtcggaggaggagtcattagaggtggccccagcactgggctgggaaacttcctg
cggcggacagcgcgcagcatcctcgacatgccgtggcagattgtgcagattgcagagacc
aaccaccctggtctgtataagctgtgggcagtgattggaaacgatcttcactgcatgaag
ctcaacatccctcgcgtcttctacgtcaaccagaaagtcccaaaacaggacgaaggagga
gtcgcgtacaggaaggtgaaccgcatgctgcctcgctccaacattgtgtactacctgtat
gagtactcagtgccagaggacatgtatcagaaccacatcaatgagatcaacgctgacctc
tctgcaccggacattgaaggagtctacgaaacacaggtccccctgctgttccgtgcgctg
gtgcaactgggatgtgtgtgtatggtaaacaagcacattgtgagggatctggctggcagg
gagactgactccttcgatctggagcatctggatatgagatctctggcccagttcagctac
ctggaacctggaagcgttcgccacatgtacctgtaccatcacagccaaggccagaaggct
ctgtttggcctcttcatcccctctcagcgcaaagccagcgttttcatcctggacacagtc
agaagtaaccagatgcccaacctgagtaatgtctacacagccgagcgcaccgccctcctg
gagaagacgtcagaggagcttctgcctccagaaaaacacaccttcgaggttcgagctgaa
aatgacatcaaggctgtatcccgagctttgcagcgcatcctgctaaactacaaggacgag
cgacggggacccaccctcattgctgtgcagtctaactgggaactgcagcgactggcagca
gggatgcctgtgcttgaggagtttccagtggttccagtacacgttgtggacgagatcaac
tacaatgtgctggactggcagcggcacggagcccggcgcatgatccgccattacctcaac
ctggacagctgcctgtcgcaggcttttgacatggccagatattaccaccttcctgtgggg
aacctgcctcaggatgtgtcgatcttcggctcagacttgttcctagcgagacatctgcgg
aaacacaaccacctgctgtggctttctcccacagcgagaccggaccttggaggaaaagag
gctgacgacagtcgtttggtcatggaaaacgatgagaagggttctgtggagataaactct
cagggatgttactctacagcatgtgtggagttggacctccagagcctggcggtgaacaca
atcctccagtcgcagcacgtcaacgacatggagggcggagccagtctgggcgtcagtttt
gatgtgatccagcaggcctcactggaggacatgatgtcaggaaaccagggcgccagcgct
ctcgctagctacgacgagacggcgctctgctccaacaccttcaggatcttaaagagcatg
gtggtcgggtgggtgagggagatcacacagtaccacaacgtgtatgcagacaaccaggtg
atgcatttctaccgctggctgcgctctccgagttcgctgctctatgacccggcgctgcat
cgcaccctgcacaacatgatgaagaaggtgtttctgcaactggttgcagagttcaaacgt
ctggggtcaactgtggtgtacgggaacttcaacaggatcatcttgtgcacaaagaaacga
aggatagacgatgctatcgcctatgtggaatatatcaccaaaagcatacattcgagagaa
atcttccactctctgtccatctccttctcacgttgttgggaattcctgttgtggatggac
ccgtctaactatggcggtgtgaagggaaaactgccttccagcatcttgtacggagaggaa
ggagccaaacagaagaaaagaaaacaaggagaggaagatgaggagggcagtgaagatgaa
gatgaggatgatgctgaagaagatgatggcgatgcagagactgatgaggttgaagagctg
attgagagcaactggaatgtcatgcattatctcccccaaacagcctcctgtcagaaatac
ttcctcatgattgtgtctgcctacatagctgcagtttaccacagcatgaaagaggagctg
agacgtaatgctcctggagcaacgccagtcaagaggcgcgcaggcagccaggcttcccag
caggcagtcggggacttgagtgcgcttcctggaatgatctccttctcccaggagtatgtg
gccagcgagctgacgcagaacattttcaccatcacccagaagatccagaaaaaggtgact
gggaccaggaatgtaactcagacctcagagatgtttcctgtcctgcccggctcacacctg
ccgctcaacaatccggcgctggagttcgtcaaatacgtctgtcaggtcctttcacttgat
gccaacatcgtgaatcaggtgaacaaactaaagagagacctcctgcgtctcgtggatgtc
ggagagttttcggaggaggcccagtttcgtgacccctgtaactcctacatactgccagaa
gtcatctgtcaccactgcaacttctgtcgggacctcgacctctgcaaggacccgactgtg
gcacaggatgggtcggtcttacctcaatggttctgctcaaattgccaaatgcaatatgaa
actgagtctattgagacagccctggtggatgctctgcagaagaaacttatgagctacact
ctgcaggatctggtttgcaccaaatgcaaaggggtgaaagaagccaacatgcccctttac
tgtgcgtgtgccggaaactttgacctgaccttctcagccaagagcttctctgagcagacc
gcagtgtttcgaaacatagcttcccactacaacatgagattcctgggggagaccatcgac
tggctgcttgagatgagccctcagatcggccagagcaggcactga
DBGET
integrated database retrieval system
