Xiphophorus hellerii (green swordtail): 116729466
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Entry
116729466 CDS
T07363
Symbol
zfr
Name
(RefSeq) zinc finger RNA-binding protein
KO
K13203
zinc finger RNA-binding protein
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xhe03041
]
116729466 (zfr)
Spliceosome [BR:
xhe03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
116729466 (zfr)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DZF_N
DZF_C
zf-met
zf-C2H2_jaz
zf-U1
Motif
Other DBs
NCBI-GeneID:
116729466
NCBI-ProteinID:
XP_032433936
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All DBs
Position
12:33516451..33560940
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AA seq
1069 aa
AA seq
DB search
MIPICPVVSFTYVPSRLGEDAKMATGNYFGFTHGAAAQYSQQPAAGVAYTHPTTVASYTV
HQAPVAAHTVAAAYAPTAAAVAVARPAPVAVAAATAAAYGGYQPTHTTNDYGYPQRQAEV
PPPPPPVTSQNYQDSYSYVRSTASAVAYDSKQYYQQPSVTAAVAAAQPQPSVADSYYQTA
PKAVYSQGVTSYTQSQQNRQVTVIKPAAASPASSTFSIFPVTSTVQPVAAAAAAASVVPS
YSQSPTYSTNAVTYSGTSYSGYEAAVYSAASSYYQQQQQQKQAVAAVAATAAWSGNTFPK
KPTFQSKQLRPKQPPKPTQIHYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKVSQGSSS
TASGGALARNAQNQLRCELCDVSCTGADAYAAHIRGAKHQKVVKLHTKLGKPIPSTEPSM
IPQTSASGASATGKTSLSSSSTSSSLCLSSNSSSSSSAPYLKGVNITSSSVVTKNPLASN
LSVASSAAPGKKVNTPKINFVAGSKLQTTGKMEEMREEIKGDTCKPAAPSSASPDAKADL
CDSLSTSALIALQSDVQPVGHDYVEEVRNDEGKVIRFHCKLCECSFNDPNAKEMHLKGRR
HRLQYKKKVNPDLQVEVKPSIRARKIQEEKMRKQMQKEEYWRRREEEERWRMEMRRYEED
MYWRRMEEEQHHWDDRRRMPDGGYIQGPLGPPGLLGVRPGLPGLQPQGPMPPRRPDSSDD
RYIMTKHAAIYPSEDELQSIQKIVSITERALKLVSDIITDQEHDKEDDKEKKELAKDRVL
KGVMRVGVLAKGLLLRGDKNVNLVLLCSDKPTESLLACIVEHLPKQLTLVTPDKYEVKGS
MEEAAIILTSCIEPKMQVTITLTSPVIREEPGREGDVTSGMVKDPADVLDRQKCLDALAA
LRHAKWFQARANGLQSCVIIIRILRDLCQRVPTWSPFPGWAMELLVEKAINSASAPLSPG
DALRRVFECISSGILLPGGPGLLDPCEKKPVDTLTAMGEQQREDITSSAQFALRLLAFRQ
IHKVLGMDPLPQMNPRFNVRNSRKRRHDNSDGTDSFEGEGKKDKKDFDN
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgattcctatatgtccagtggtctccttcacctatgtgcccagccggcttggtgaagat
gccaaaatggctaccggcaattatttcggatttacgcatggcgccgcagctcagtacagc
cagcagccagctgcaggggtagcatacactcatcccaccactgtggccagttacacagtt
catcaggcaccggtggcagcacacactgttgcagcagcctatgcacccactgcagctgcc
gttgctgtggcaagacctgcgcctgttgccgtggcagctgcaactgctgccgcttatgga
ggataccagccaacccatactaccaatgattatggctacccacaacgccaagcggaggtc
ccgccaccccctccaccagtcacctcacagaattaccaggactcttactcatatgttcgc
tccacggcttcagctgtagcttatgacagtaagcagtactaccagcagccttctgtcaca
gcagctgttgctgctgcacagccgcagcccagtgttgcagactcttactaccagacagct
cccaaagctgtatatagtcaaggtgtaacatcctatacccagagccaacagaatcgccag
gttactgtcatcaagccagctgctgccagtccagcttcatccaccttctccatcttcccg
gtgacctccactgttcagccagtggcagctgcagcggctgcagcctcagttgttccctct
tactcccaaagcccaacatacagcaccaatgctgtcacctactctggaacatcatactcg
ggctatgaagcagctgtgtactcagcagcctccagctactaccagcagcagcagcagcag
aagcaggcagttgcagcagtggcagcaacagctgcctggtcaggaaacactttccctaag
aaacccacattccagagtaagcagcttcgacccaagcagccacccaagcccactcagata
cactactgtgatgtctgcaagatcagctgtgctggcccacagacttataaagagcatttg
gaaggccagaagcataagaagaaggaagcagcactgaaagtgtcgcagggcagcagcagc
accgcttcaggaggggcgctggcccggaacgctcagaaccagcttcgctgtgaactttgt
gatgtttcgtgcactggagctgacgcttatgccgcccatattcgaggagccaagcaccag
aaggttgtgaaacttcataccaaacttggaaagccgattccttccacagagcccagtatg
atccctcagacatcagcctcaggtgcttctgctactggcaagacctcccttagcagttcc
agcacttccagctctttgtgtctgtcttccaactcttcctccagctctagcgccccctat
ctgaaaggtgtcaacataaccagcagcagtgtggttaccaagaatccactggccagcaat
ctctctgttgccagttctgcagcacctggcaagaaagtcaacactccgaagattaatttt
gttgctggaagtaaattacagacgacaggaaagatggaggagatgagagaagaaatcaaa
ggcgatacttgtaagccggccgcaccctcttctgcttccccagatgctaaggctgatctc
tgtgattctctgtccacatcggcacttattgctttgcagagtgacgtccagcctgttggt
catgactatgtggaagaagtcagaaatgatgaaggcaaagtcattcgttttcactgcaag
ctgtgtgaatgtagcttcaacgatcccaacgcaaaggaaatgcacctgaagggacggagg
catcgcctccagtataagaagaaggtaaatcctgatctgcaggtagaggtcaagcccagc
atccgagcccgaaagattcaggaagaaaagatgagaaaacagatgcagaaagaagagtac
tggagaagaagagaagaggaggagcgctggaggatggaaatgaggcgatatgaagaggac
atgtactggagacgtatggaggaggagcagcatcactgggatgatcggcgtcgaatgcct
gatggggggtacatacaggggcccctgggccctcctggccttctaggagtccgaccaggt
ctgccaggtctgcagccacagggtcccatgccgccccgtcgtccagattcttctgatgac
cgctacatcatgaccaagcatgcagccatttacccatctgaagatgagctccagtccatt
cagaaaattgtgtcaattacagagcgagccctcaaacttgtctctgacataatcacagat
caggaacacgacaaagaggacgataaagagaagaaggaactggccaaagacagagtgcta
aagggtgtgatgagggtcggtgtcctagctaaaggcctgctgctccgtggagacaagaac
gtcaacctagtgctgctctgctctgacaagcccacagaaagcctgctggcctgcattgtg
gagcacctccccaaacagctaacgctagtaacaccagacaaatatgaggtcaagggatcg
atggaggaagcggctatcatcctaacatcttgcattgagccgaagatgcaagtgacaatc
actttaacttcaccggtcatcagagaggagccgggccgggaaggagatgtaacctcgggt
atggtgaaagacccagcggacgtcttggacaggcaaaaatgccttgacgctctggctgct
ctgcgccacgctaagtggttccaggctagagccaatggtcttcagtcctgcgtgatcatc
atccggatcctgagagacctctgtcagcgagtccccacatggtcacctttcccaggatgg
gcaatggagctgctggttgagaaggccattaacagcgcctctgcccctctcagccccggt
gatgcactgagacgtgtctttgaatgcatttcttctggaattttacttcctggtggacca
gggttgttggatccgtgtgagaagaagcctgtggataccctcactgccatgggagagcag
cagagagaggacataacctccagcgctcagtttgctctgaggcttctggcgttccgtcaa
attcacaaagttctgggtatggatcccttaccgcagatgaaccctcgcttcaacgttcgc
aacagccggaaacgccgtcatgacaacagtgatggaacagacagctttgaaggggaaggc
aaaaaagacaaaaaagattttgataattaa
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