Xiphophorus hellerii (green swordtail): 116729571
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Entry
116729571 CDS
T07363
Name
(RefSeq) probable global transcription activator SNF2L2
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116729571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhe03021
]
116729571
03036 Chromosome and associated proteins [BR:
xhe03036
]
116729571
Transcription machinery [BR:
xhe03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116729571
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
116729571
Chromatin remodeling factors
BAF complex
116729571
PBAF complex
116729571
GBAF(ncBAF) complex
116729571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
116729571
NCBI-ProteinID:
XP_032434100
LinkDB
All DBs
Position
12:2589025..2628285
Genome browser
AA seq
1604 aa
AA seq
DB search
MSTPSDTSGGMSHPGPSPGAGLSPGPILGPSPGPDPSPGSVHSMMGPSPGPGTPNAPHGM
QAQGQSDYSQDNMYPMHKPMEAAMNDKTMAEAMHFGHMKGVGMRSLHSGMGPPQSPMDQH
SQGYMSPHPSPLGIHEHASSPMSGGGGGPTPPHMPPSQPSPMMSMDPQGGMASMSGMGQP
GRGPSSFSPIQLQQLRAQILAYKILARGQPLPENLQLAVQGKRSLPTMQQQQPQAPLPPQ
QQPQQPQQQQPQQQQQQQQQASGASPYRPSGMSMAPMSGPQSSPCPTPALQGHNQSTGPK
PWTDGQASDNQAQKHLTPVPSGRPSPAPPQAPVGAPGPVPGSSGAVHPPGQQVSPMLQMQ
QKQNRITPVQKPQGLDPVGILQEREFRLQARIAHRIQELESLPGSLPPDLRTKATVELKA
LRLLNFQRQLRQDVVACMRRDTTLETALNSKAYRRSKRQTLREARMTEKLEKQQKLEQEK
KRRQKHQEYLNSILQHAKDFKEYHRSVSGKIQKLTRAVANWHTNTEREQKKETERLEKER
MKKLLEEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTTLVYEHKAAQAAKEKKRRKTK
KKKVEGDGEGTSAIGPDGEPMDESSQMSELPVKVIQTETGKVLQGTDAPKSSQLEAWLEM
NPGYEVAPRSDSEESGSEFEEEDEEEMGKAETEEKKKVDSNGDEVAENDTKNIIESAKQD
VDDEYSVPTGQTSSQSYYGVAHAVIERVEKQSSLLINGMLKQYQVQGLEWMVSLYNNDLN
GILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWVYEFDKWAPSVVKIAY
KGTPGLRRGLVPQLRSGKFNVLITTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLT
QVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERV
DLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSAIQRVLYRHMQKG
ILLTDGSEKDKKGKGGAKTLMNTIMQLKKICNHPYMFQHIEESFAEHLGYPNGIINGHEL
YRASGKFELLDRILPKLQATGHRVLLFCQMTSLMTIMEDYFGYRNFQYLRLDGTTKSEDR
AALLKKFNEEGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQ
QNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEE
QNEDEDEVPDDETLNQMIARNEDEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWII
KDDAEVERLTYEEEEEKMFGRGSRCRRDVDYSDTLTEKQWLRAIEDGNLEEIEEEIRLKK
RKRKRRQDKDSSSRDDGGMKAKKRRGRPPAEKLSPNPPKLTKQMNTIIDTVINYRDGSGR
QLSEVFVQLPSRKELPEYYELIRKPVDFKKIKERVRNHKYRSLGDLEKDVMLLCQNAQTF
NLEGSQIYEDSIVLQSVFKSARQKIAKDEDSEDDSDEDDDDDYDSEAEAKSVRVKIKLGR
DGRSHDKGKKRQSRGKAKPVVSDDDSDDDQDDNDLSDKSKSDDD
NT seq
4815 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgccgtcagacacgtcaggtggcatgtcccatcctggcccgtcaccaggggca
ggcctgtccccagggcccatcttgggccccagccccggacccgacccctcaccaggttct
gtccacagcatgatgggccccagtcctggaccagggacacccaacgcaccgcacggcatg
caggcccagggacaaagcgattactctcaggacaacatgtatcctatgcataagcccatg
gaggcggccatgaatgataagacgatggccgaggcgatgcatttcggtcacatgaaaggt
gtcggcatgcgatccctgcacagcggcatggggcctcctcagagcccgatggaccagcac
agccaaggatacatgtctccacatccatccccactgggaatccatgagcatgcctccagc
cccatgtccggaggtggaggagggccgaccccgccccacatgcctccatcccagcccagc
cccatgatgtccatggaccctcagggaggcatggccagcatgtcagggatgggccagccg
gggcgcggcccctcctccttcagccccatccagctgcagcagctcagggcgcagatcctg
gcctataagatcctggcccgcgggcagccgctgcccgagaacctccagctggctgttcag
ggcaaaaggagcctacccacgatgcaacagcagcagccgcaggcgccgctgccgccgcag
cagcagccacaacaaccacagcagcagcagccacagcagcagcagcagcagcagcagcaa
gcatctggtgctagcccatacaggccttcaggtatgtcgatggctcccatgagcggcccc
caatcaagcccctgcccaacaccagcactgcaaggacacaatcaaagcaccggacccaag
ccttggactgacggtcaagctagtgacaatcaagcacagaagcacctcaccccggtcccc
agtggacgcccatctcccgctcccccccaggcgcctgtaggggccccgggccccgtcccg
gggagctcaggggccgttcaccctccagggcagcaggtgtcccccatgctccaaatgcag
cagaaacagaaccggatcacaccggtccagaagccccaggggttggacccggtgggaatc
ctgcaggagagagagttcagactgcaggcccggatcgctcatcggatccaggaactggag
agtctgcctggctctttgcctccggacctccgaactaaagcgacggtggagctcaaggcg
ctgcggctgctcaacttccagcggcagctgaggcaggatgtggtggcgtgtatgaggcgc
gacacgaccctggagacggccctcaactcgaaggcgtacaggcgcagcaagcggcagacg
ctcagggaggcgcgcatgacggagaaactggagaagcagcagaaactggagcaggagaag
aagcgccgacagaaacatcaggaatatctcaacagtattctccaacatgccaaggacttt
aaggaataccaccgctcggtgtccgggaaaatccagaaactcacccgagccgtcgccaac
tggcacacaaacaccgagcgggagcagaaaaaggagacggagcggctggagaaggagagg
atgaagaagctgctggaagaggatgaggaaggctatcgaaaactcattgaccagaagaag
gacaagcgtctggcctacctgctgcagcagacggatgaatacgtggccaacctcacgact
ctggtgtacgaacacaaagccgctcaggctgccaaggagaagaagagaaggaagacgaaa
aagaagaaggtggaaggagacggtgaaggtaccagcgccattggaccggatggcgagccc
atggatgagagcagccagatgagcgaactgccagtcaaagtgatccagaccgagaccggg
aaggttctacaggggaccgatgcccccaagtccagccagctggaggcttggctggagatg
aaccctgggtatgaagtcgctccccgttcagacagcgaggaaagcggctcagagttcgag
gaagaggatgaagaggaaatgggcaaggcggaaacggaggagaagaagaaagttgattcc
aacggagacgaagtggctgagaacgacaccaagaacatcatcgagtctgccaaacaagac
gtggatgatgagtacagcgtccccactgggcagaccagctcccagtcgtactacggtgtg
gcgcacgccgtcatcgagagggtggagaagcagtcgtctctgctgatcaacggcatgctc
aaacagtaccaggtccagggtctggagtggatggtgtccctctacaacaacgacctgaac
ggcatcctggctgatgaaatgggcctggggaagaccatccagaccatcgccctcatcacc
tacctgatggagcacaagaggctcaacggcccctatctcatcatagttcctctctcgact
ttgtccaactgggtttatgaatttgacaaatgggctccttctgtggtcaaaattgcttac
aagggaactcctggtctgcgtcggggtctcgtccctcagctccgcagcggcaagtttaac
gtcctcataacgacgtatgaatacatcatcaaggacaaacacatcctggcgaagatccgc
tggaagtacatgatcgtggacgagggccaccgcatgaagaaccaccactgtaagctgacg
caggtgctgaacacccactatgtggctccgcgccgcctgctgctcaccgggacgccgctg
cagaacaagctgcccgagctctgggccctgctcaacttcctgctgcccaccatctttaaa
agctgcagcacctttgagcagtggttcaacgcgccgttcgccatgactggagagagggtt
gaccttaacgaggaagagaccatcctgatcatccgccgtctgcataaggtgctgcgcccg
tttctgctccgcaggctgaagaaggaggtggagtctcagctgcccgagaaagtggaatac
gtcataaaatgtgacatgtctgcgatccagagggttctctaccgccacatgcagaaaggc
atcctgctgaccgacggctcggagaaagacaagaagggcaaaggtggagctaagactctg
atgaacaccatcatgcagctgaagaagatctgcaaccatccgtacatgttccagcacata
gaggagtcttttgctgagcacttgggctacccgaatggcatcatcaatgggcatgaactg
tacagagcttctgggaagtttgagctccttgatcggatcctaccaaagctccaggccact
ggacacagggtcctgctgttctgccagatgacgtctctgatgacgatcatggaggattac
ttcggctatcgcaacttccagtatctacgccttgatggaaccaccaaatccgaggaccga
gccgcactcctaaagaaatttaacgaggaagggtcccagtacttcatcttcctcctcagt
accagagccggtggcctggggctcaacctgcaggccgccgatacggtcgtcatctttgac
agtgactggaacccgcaccaggacctgcaggcccaggatcgggctcaccgcatcgggcag
caaaacgaggtccgcgttctgcgcctctgcaccgtcaacagcgtggaagagaagatcctg
gctgctgccaaatacaaactgaacgtggatcagaaagtcatccaggccggcatgttcgac
cagaaatcctccagccacgagcggcgcgccttcctgcaggccattttagagcatgaggag
cagaacgaggatgaagacgaggtccctgatgatgaaacgcttaaccagatgatagctcgt
aatgaagacgaatttgatctgttcatgcgcatggacatggaccgtcggcgcgaggacgcc
cggaacccgaagcgtaagcctcgtctgatggaagaagacgagctgccgtcgtggatcatc
aaggacgacgccgaggtggagaggctcacctacgaggaggaggaggagaagatgtttggc
cgagggtcgcgctgccggcgggacgtggactacagcgacacgctgaccgagaaacagtgg
ctgcgagccattgaggacgggaacttggaggagatagaggaggaaatccgcttgaagaag
cgtaaacgcaaacggcgtcaggacaaagactcgtccagcagagacgacggcggcatgaag
gccaagaagaggagagggcgaccgccggccgaaaagctctcacccaacccgcccaaactc
accaagcagatgaacaccatcatcgacacggtcatcaactacagagatgggtcaggcagg
cagctgagtgaggtgtttgtgcagctgccgtccaggaaggaactgccagaatattacgag
ctgatcagaaaacctgtcgacttcaagaagatcaaggagcgtgtgagaaaccacaaatac
cgaagtttgggcgaccttgagaaggacgtgatgcttctctgccagaacgcacaaaccttc
aacctggagggatcccagatatacgaggactccattgttctccagtctgttttcaagagt
gccagacagaagatcgccaaggacgaagacagcgaggatgacagcgatgaggatgatgat
gacgactatgactcagaggccgaagccaagtctgtgcgggtgaagatcaagctgggtcgg
gacggacgcagccacgacaaaggcaagaagaggcaaagccgcggaaaggccaagccggtg
gtgagcgacgacgacagcgacgacgaccaggacgataacgatctgtcggataaaagcaaa
agcgacgacgactga
DBGET
integrated database retrieval system
