Xiphophorus hellerii (green swordtail): 116729746
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Entry
116729746 CDS
T07363
Symbol
gapvd1
Name
(RefSeq) GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1
KO
K27566
GTPase-activating protein and VPS9 domain-containing protein 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xhe04131
]
116729746 (gapvd1)
Membrane trafficking [BR:
xhe04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
116729746 (gapvd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGAP
VPS9
DUF5601
DUF5740
CEND1
Motif
Other DBs
NCBI-GeneID:
116729746
NCBI-ProteinID:
XP_032434354
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All DBs
Position
12:23955668..23991171
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AA seq
1486 aa
AA seq
DB search
MVKPDIHTLAHHLKQERLYVASEKQLIQRLNSDVLKTAERLYRAAWIAKQQRINLDRLIL
TSVEASPAECCQHAKMLEDTQFIDGYKTLGFQETIYGEFLARLRENPRLVASCLVAGERL
NQEHTQGVIHNVFTSLYGNCIMQEDESYLLQVLRYLVEFELKENDNPRRLLRRGTCAFSI
LFKLFSEGLYSAKLFLTATLHEPIMQLLVEDEDHLETDPAKVTERLTPAQQERFGEKGSE
DYKQRVQAAVETNEAKLVALVNKFIGYLKQNTYCFPHSLRWIVSQMYKTLSCVERLEVGE
VRTMCTDLLLTCFICPAIVNPEQYGIISDAPINEVARFNLMQVGQLLQQLAMADDDIDPR
KKSSLSKFDKSCVAAFLDVVIGGRAVETPPMSSMNLLEGLSRTAVYITHSQLLALVDFVR
SVMAGDHLREEDHMALETLLANVPHSRTVKSNSLELTPSNTPQLSPATTPANKKNRLPIG
QHLAAITSWDPSTTTLSAHIPLVTPFAAARSRSRTNIAQEGEAEASSQESLQELMPEEVL
VISFGTGPQTVPGMMSENEVLNLQMADGPQGDGPADDTKLHGKPDKTLRFSLCSDNLEGI
SEGPSNRSNSVSSLDLEGESVSELGAGPSGSNGVEALQLLEHEQATTQDNLDDKLRKFEI
RDMMGLTDDRDISETVSETWSTDVLGSDFDPNMDEDRLQEIAGAAAENMLGSLLCLPGSS
SVLLDPYGSTMSETTSEAWSVEVLPSDSEAPDLKQEERLQELESCSGVGSTSDDTEVREV
SSRPSTPGLSVVSGISATSEDIPNKIEDLRSECSSDFGGKDSVTSPDGEESGHGAHHLTS
PPSQVDSLLAMFDPLSSGEGSSTGTIVRPKVHYARPTHPPPDPPIPEASAMGPDIRHSIC
TAQCLAQAELEQSKQRHSFPDRLVRSRSSDIVCPGRRPTSDPGLNRRVAVEERDPPGAFA
AGPSSSPSKDSLKGEVEDRKDSDDEKSDRNRPWWKKRFVSAIPKVLYWTAESDVPAPMTA
FRKKDKHEKEDAAQDRVPQDDPVPRQNTQAQAAEDILDKYRNIKRTSPSDGATGGASYDG
SGELCVEDNVNDPPREDGLQNISADDLPDSASQTAQQHDSKFSFSDAKKKLRLALCSADS
VALPIMAPTTTRNGLPDHMDPEDNEIVCFLKVQLAEAINLQDKNQMAQIQETTRCVSRFD
ARTCRKLLAAIAEDYRKRAPYIAYLTRCRQGLQTSQAHLERLLQRVLRDKEVANRYFTTV
CVRLLLEHMETKMLEFIKAFQGCTAADDKTAAVEDFLRYLYGAMARDAIWQYASEDQLQD
AQMAIERSVMNRIFKLAFYPNQDGDILRDQLFHEHIQRLSKVVTANHKALQIPEVYLKEA
PWPSAQAEIRTINAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADDFVPVLVFVLIR
ANPPCLLSTVQYINNFYASRLSGEECYWWMQFTAAVEFIKTIDDRK
NT seq
4461 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagccagacatccacactctggcccaccacctaaagcaggagcggctgtacgtg
gcatcggagaagcagctgatccagaggctcaacagcgatgtgctaaagacggccgagagg
ctgtaccgagcggcctggatcgccaagcagcagaggatcaacctcgatcggctcattctc
accagtgtggaggcctctccagctgagtgctgccaacatgccaagatgctggaagatacg
cagttcatcgacggctacaagactctgggtttccaggagacgatctatggcgagttcttg
gccaggctgagggaaaaccccagacttgttgcatcctgccttgtggcaggagaaagactt
aaccaggagcacacccagggcgtcatccataacgtcttcacctcactttatggcaactgt
atcatgcaggaggatgagagctacctgttgcaggtgttgcgatacctggtagaatttgag
ctgaaggagaatgacaacccccgccgccttctgcgacgtggaacctgtgccttcagcatc
cttttcaaactcttctcagagggcctgtactcggccaagctcttcctcaccgccaccctt
cacgaacccataatgcaactgctggtggaggatgaggatcacctggagactgacccggcc
aaggtgacggagcgcctcaccccggcccaacaggaacgcttcggggagaaaggctctgag
gactacaagcagagagttcaggcagctgtggagaccaacgaagccaagctggttgccttg
gtgaacaagttcattggttacctgaagcagaacacctactgcttccctcacagcctgcgc
tggatcgtgtcccagatgtacaagactctgtcgtgtgtggagcgactcgaggtgggtgag
gtgcgcaccatgtgcaccgacctcctgctgacctgtttcatttgcccggctatagtcaac
ccagaacagtacggcattatctcggatgcacccatcaatgaagtggctcgttttaatctc
atgcaggtggggcagcttttgcagcagctagccatggccgatgatgatatagaccccagg
aagaaaagcagtttgtctaagtttgataagagttgtgttgccgcttttctggatgtggtg
attggaggacgagcagttgagaccccgcccatgtcctccatgaatctcctcgaagggctc
agtagaactgcagtctatattactcatagtcagttgcttgcactggtggactttgttcgg
agcgtaatggcaggtgaccaccttcgagaagaggatcacatggccctggagactttgctg
gctaacgttccccattctcgaaccgtgaagagcaacagtttggagcttactccttccaac
acccctcagctttccccagctacaacccctgccaacaagaagaacagattacccatagga
caacatttagccgctataacatcctgggacccctcaaccaccactctgtctgctcacatt
ccattagtaaccccttttgcagctgctcgcagccgtagccgtaccaacatagcccaggag
ggggaggcagaggccagctcccaggagtccttgcaagagctgatgccagaggaggtgcta
gtaatttcattcggaactggtcctcaaactgtccctgggatgatgtcagagaatgaggtt
ttgaacttgcagatggctgatgggccccagggggacggcccggctgacgatactaagctg
catggtaaaccagacaaaaccctgcgcttctcgctgtgcagcgacaacttggaaggaatc
tcagagggaccatccaatcgttccaactctgtgtcctcactggacctggagggagagtct
gtttccgagttgggagccggaccttcggggagcaacggcgtagaagcgctgcagctcttg
gagcacgaacaggctaccacacaggacaacctggatgacaaattgcgcaagttcgagatc
agagacatgatgggtctgacggatgaccgggacatctccgagacggtcagtgaaacctgg
agcactgacgtccttggcagcgactttgacccaaatatggatgaagatcgactgcaggaa
atagcaggagcagcagcggagaacatgctcggcagcctgctgtgccttcccggctccagc
tcggttctgctggacccctacggctccaccatgtcagagaccaccagcgaggcctggagc
gtggaggtccttccaagtgactcagaagccccagacctgaagcaggaggagcgtctgcag
gagctggagagctgctctggcgttggcagcacctctgatgacaccgaggtcagagaagtc
agctcaagacccagcacaccaggcctcagtgttgtctcaggtatcagtgcgacctcagaa
gacatcccaaacaagatcgaggacctgcggtcagagtgtagctcagattttggcggaaag
gactccgtgaccagtccggatggcgaggagtcgggtcatggagcccaccatctgacatcc
ccgccttcacaggtcgattctttgctcgccatgtttgatccactctcctctggtgaaggc
tcctccacagggacaatagttcggccgaaggtgcactacgccaggcccactcatcctccc
cctgaccctcccatccctgaggccagtgccatgggcccggacatacggcactccatttgc
acagctcagtgcttggcccaggctgagctcgagcaatcaaagcagcgccattccttcccc
gacagactggtccgcagtcgcagttctgacatcgtgtgcccgggccgccggcccacaagc
gaccccggccttaacaggcgggtggcggttgaagagcgtgaccctcccggagcttttgcc
gccggaccttcctcttcgccgagcaaggactccctgaaaggagaggtggaagacagaaaa
gacagcgacgatgagaaatctgatcgcaacagaccctggtggaagaaacgttttgtgtca
gccattcccaaagtgctgtattggacggctgagagtgacgtcccagcgccaatgacggcg
ttcaggaagaaggacaaacatgagaaggaagatgctgcacaggatcgtgtcccacaagat
gacccagtgccaagacagaacactcaagcccaggcagcagaggacatcctggacaagtac
aggaacatcaagaggaccagcccgagtgatggagccaccggaggagcctcttatgatgga
tcaggagagctgtgtgtggaggacaatgtgaatgaccctcccagagaagatggtctgcaa
aacatttctgcagatgatctgccagactcagccagccagacggcacagcagcacgattcc
aaattctctttcagcgatgcaaagaagaagctgaggttggctttgtgctctgcagactct
gtagctctccccatcatggcgccaacaacaacgcgtaacggactgcctgatcacatggat
cctgaagacaatgagatcgtctgcttcctgaaggtccagctggcggaggccatcaacctt
caggataagaaccagatggcccagattcaggagaccacacgctgcgtcagccgttttgat
gcacgcacctgcaggaagctgcttgccgccatcgcggaagattacaggaagcgggctccg
tacatagcctacctgacccggtgccgccagggtctgcagacatctcaggcccacttggag
aggctcctgcagagggtgctgagagacaaggaggtggcaaaccgctacttcaccaccgtc
tgcgttcgcctcctcctcgaacatatggagacaaagatgctcgagttcattaaagctttc
caggggtgcacagcagctgatgacaagactgcagcagtggaggattttctgcgctacttg
tacggtgccatggcccgtgatgccatttggcagtatgcaagcgaggaccagctgcaggat
gcccagatggctatcgagcgcagcgttatgaaccgcatcttcaaactggccttctacccc
aatcaggatggagatattctcagagaccagctgttccatgaacacatccagcggctttca
aaagttgtgacggcaaatcacaaagctctgcagatcccagaggtttaccttaaagaggct
ccctggccttcagctcaggctgagatcaggactatcaacgcatacaagaccccacgagac
aaagtccagtgcatactgcgtatgtgctccaccatcatgaatctgctgagtctagccaac
gaggactcggtgccaggagcagacgacttcgtcccagtcctcgtctttgtcctcataaga
gcaaaccctccctgcctgctgtccaccgttcagtacatcaataatttctacgccagccgg
ctgagtggggaggagtgctattggtggatgcagttcaccgctgcggtggaattcattaag
accatcgacgatcgcaagtga
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