KEGG   Xiphophorus hellerii (green swordtail): 116729883
Entry
116729883         CDS       T07363                                 
Symbol
sf3a1
Name
(RefSeq) splicing factor 3A subunit 1 isoform X1
  KO
K12825  splicing factor 3A subunit 1
Organism
xhe  Xiphophorus hellerii (green swordtail)
Pathway
xhe03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xhe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    116729883 (sf3a1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xhe03041]
    116729883 (sf3a1)
Spliceosome [BR:xhe03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    116729883 (sf3a1)
 Complex B
    116729883 (sf3a1)
 Complex C
   U2 SnRNP specific factors
    116729883 (sf3a1)
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin Rad60-SLD Ubiquitin_2
Other DBs
NCBI-GeneID: 116729883
NCBI-ProteinID: XP_032434623
LinkDB
Position
12:23676177..23682476
AA seq 784 aa
MPPGPVQIVQPETNNKQNDGPAEETPATKPIVGIIYPPPEVRNIVDKTASFVARNGPEFE
ARIRQNEINNPKFNFLNPNDPYHSYYRHKVNEFKEGKAQEPSAAVPKVMQQQAMQQSQQL
PQKVQVIQETVVPKEPPPDFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQ
RNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLLIKLKKEAENPKEVMDQVRYRVEWA
KYQERERKKEEEEREKERVAYAQIDWHDFVVVETVDFQPIEQGHFPPPTTPEELGARILI
QERYEKYGESEEVEMEVESEDEEDEREKRADGQPSQPDQDTQVQDMDEGSDDEDEGVKAP
LPPDNPMPPPLPPAPEQVIIRKDYNPKASKPQPSVAAPDEYLISPITGEKVPASKMQEHM
RIGLLDPRWLEQRDRSIRDRQTEDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIG
EEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVGEDETKEKIGPSK
PSEIHQPPPMPSSAPSLPKPSPPVTAVPRPSISVAPPVRTTLLSAVPVIPRPPVTPVVRL
APGQVITQMPPMIPAPRVNVVPMPPAPHLMAPRPPPMVVPTAFVPAPPMPQPPSAAPAPP
IHPPPPHEDEPMSKKMKTEDNLIPEEEFLRRNKGPVAIKVQVPNMQDKTEWKLNGQVLNF
TVPLTDQVSVIKVKIHEATGMAAGKQKLQYEGIFIKDSNSLAYYNMTNGSIIHLALKERG
GRKK
NT seq 2355 nt   +upstreamnt  +downstreamnt
atgccgcctgggcccgttcagatagttcagccggagaccaacaacaagcagaatgatgga
cctgcagaagagactccagccactaagcccatcgttggcatcatataccctcctccagaa
gtccgaaacattgtcgacaagacggccagttttgttgccaggaatggaccagagtttgaa
gcaagaatccgtcagaatgagatcaacaaccccaaatttaatttcctcaaccccaacgat
ccctaccattcttactaccgccacaaggtcaatgaatttaaggagggcaaggcacaagaa
ccatctgcggcagtgcctaaggtcatgcagcagcaagccatgcagcagtctcagcagctt
cctcaaaaggtgcaggtgattcaggagaccgtggtccccaaagagccaccccccgacttt
gagttcattgcggaccctccatcgatctctgcatttgatctggatgttgtgaagctcact
gcccagtttgtggctcgcaatggccgacagtttctcacccagctgatgcagaaggagcag
aggaactaccagtttgactttctgcgaccacagcacagcctcttcaactatttcaccaaa
ctggtggagcagtacacgaagatcttgatccctcccaaaggcctgctaatcaaacttaaa
aaagaagctgagaacccaaaggaagttatggaccaggtgaggtaccgtgtcgaatgggca
aaataccaggagcgtgagagaaagaaggaggaagaggagagggagaaggaacgggtcgct
tacgcccaaatagactggcatgattttgtggtggtggagacggtggatttccagcccatt
gaacaaggtcacttccctccacccacgacaccagaggagcttggcgctcgcatccttatc
caggagcgctacgagaaatacggagaaagcgaggaggtggagatggaggtggagagtgag
gatgaagaggatgaacgagaaaagcgggctgacggccagccttctcagcctgatcaagac
acacaagtccaggacatggatgagggatctgatgacgaagatgaaggtgtgaaggctcca
ttgccaccagacaacccgatgccaccccccctgcctccagctccagaacaggttattatt
cgcaaggactacaaccccaaagcttccaagccgcagccctcggttgcagctccagatgaa
taccttatttcaccgatcaccggtgagaaagtccccgccagtaagatgcaggagcacatg
cgcatcggcctgctggatccgcgctggcttgaacagagagaccgaagcattagagacagg
cagacggaggatgaagtctatgctcccggtttggatattgagagcagcttgaagcagctc
gctgagaggcgtactgatatctttggtgtggaagagacggccatcggaaagaagatcggc
gaggaggaaattcagaagccagaagaaaaggtcacctgggacggccactcagggagcatg
gctcgtacgcagcaggcagcgcaggccaacatcactctgcaggagcagatcgaagccatt
cacaaggccaaaggactggtgggagaggatgaaacgaaggaaaaaattggccccagtaag
ccgagtgaaattcatcagcctcctcccatgccctcatcggcaccaagtctgcctaaaccc
agtcctcctgtcacagccgtgccacgcccatctatctcagtggctcctccagtccgtacc
actctgttgtctgccgtacctgtgattccacggcccccggtgacccccgtggtgcgtttg
gcgccaggtcaagtcattacacagatgccgcccatgattcctgctcctcgtgtcaacgtg
gttcccatgccaccagcgccccacctcatggccccaaggccaccccctatggttgttcca
actgcgtttgtccccgctcctcccatgcctcaaccacccagcgctgccccagcgccgccc
atccacccaccccctcctcatgaggacgaacctatgagcaagaagatgaagacggaggac
aacctcatcccagaggaagagttccttcgtcgaaacaagggtcctgtggcaatcaaagta
caagtccccaacatgcaggacaagaccgaatggaagctaaatggccaagtgttgaatttc
actgtcccgcttacagaccaggtgtctgtcattaaagtcaaaatccatgaggcaacaggc
atggcggctggaaaacagaagttgcagtatgagggcatcttcatcaaggattcgaactct
ctggcttattacaacatgaccaatggttccatcattcatttggctctgaaggagagagga
ggaagaaagaagtga

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