Xiphophorus hellerii (green swordtail): 116729925
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Entry
116729925 CDS
T07363
Symbol
rag1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
116729925 (rag1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xhe04121
]
116729925 (rag1)
Enzymes [BR:
xhe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116729925 (rag1)
Ubiquitin system [BR:
xhe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
116729925 (rag1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAG1
RAG1_imp_bd
zf-C3HC4
zf-C3HC4_2
TRAF3_RING
U-box
zf-RING_10
zf-C3HC4_4
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
116729925
NCBI-ProteinID:
XP_032434705
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All DBs
Position
2:15040519..15047417
Genome browser
AA seq
1069 aa
AA seq
DB search
MAAENPETDGPRSFMPAELQHPHSKYSQWKFKLFRVKSMEKAPLPSETQTEIGASLGISP
PTAPNIEADHGGGLASVMKLCLGGKSKENVEGAGKRVDMKLQEMDTHMNHLRCLCRICGM
VLRKVKGPVHDVHGDLDDASKCVLRKMGCKFTSWPDILLKVFKVDVTEDAESIHPLSFCH
RCWLAAIRGGGVCSFTRTKVPEWKPHTSHCYLCSPKKSSFQRTGRKRRKVVPKVQSLAKR
ARWDHGDTIAVGEKRALRPFGDLHSPVLRAWKKNGIQREQWVKNITHCQNDHLNTKLIAE
KLPTDFIISFTCLVCDHLLCDPVQSPCGHLFCRSCIIKFTHVLGPHCPSCNVSCAPDDLI
PPAKTFLSTLYSLPLLCPCEGCGEHVQLGLFKAHCLNHELEPGTNKHLSHFQSYLLTNKG
GRPRQHLLSLTRRAQKHRLKDLKSQVKVFADKEEGGDLKSVCLTLFLLALRSGNEHRQAD
ELEAMMQGRGFGLSPAVCLAIRVNTFLSCSQYHKMYRTVKATSGRQIFQPLHTLRAAEKE
LLPGFHQFEWQPALKNVSTSYNVGIINGLSGWTSSLDDSPADTITRRFRYDVALVGALKD
LEEDIMEGLRDTGMEDSACTLGFRVMIKECCDGMGDVSEKHGGGPAVPEKAVRFSFTVMS
VSIQAEDEQEEVTIFTEPKPNSELSCKPLCLMFVDESDHETLTAVLGPIVAERNAMKESR
LILSMGGMPRSFRFHFRGTGYDEKMVREMEGLEASGSTYICTLCDSSRAEAAQNMVLHSV
TRSHDENLERYEIWRTNPFSESVDELRDRVKGVSAKPFLETQPTIDALHCDIGNATEFYK
IFQDEIGEVYKNPNPSREDRRSWRAALDKQLRKKMKLKPVMRMNGNYARRLMTMEATEVV
CELVPSEERREVLRELMRLYLQMKPVWRATCPAKECPDQLCRYSFNSQRFADLLSATFKY
RYNGKITNYLHKTLAHVPEIIERDGSIGAWASEGNESANKLFRRFRKMNARQSKAFELED
VLKHHWLYTSKYLQKFMEAHKDSAKAFQATIDPEEIQDDEDLTPEITGL
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagagaacccagagacagacggtcccagatccttcatgcctgctgagctccag
catccccactctaagtattctcagtggaagtttaagctgtttagggtgaaatctatggag
aaggcacctctgccgagtgagacacaaactgagataggagcttcattagggatctcacct
cctactgctccaaatatagaagcagatcatggagggggactggcgagtgttatgaaattg
tgccttgggggaaaaagcaaagaaaatgtggagggcgctggcaagagagttgatatgaaa
ctgcaggaaatggacacccacatgaaccatctcaggtgcctgtgccgcatctgtggaatg
gtcctgaggaaggtcaaaggacctgtgcatgatgtccatggtgatctggatgacgcaagc
aagtgcgtgctccgcaaaatgggttgcaagtttacgagctggccagacatacttctgaaa
gtattcaaggtggatgtgacagaggacgcagaatccatccaccctctttccttctgccat
cgctgctggcttgccgccatacgaggaggaggggtctgcagtttcactagaacaaaagtc
ccagagtggaagccccacacctcacactgctacctgtgctccccgaaaaagtcatcattt
caaaggactggaagaaagaggaggaaggttgttcctaaagtccagagtttggccaaaaga
gccaggtgggaccacggtgacaccattgctgttggtgagaagagagcccttagacccttt
ggagacctccacagtcctgtgctgagggcctggaaaaaaaatggtatccagagagaacag
tgggtaaagaatatcacacactgccaaaatgaccacctgaacaccaaactgattgcagag
aagctccctacggattttatcatttctttcacctgcctggtgtgtgaccacctgctctgt
gatccagttcagtccccctgcgggcatctcttctgccgcagctgcattataaaatttacc
cacgttctgggaccccactgcccttcatgcaacgtttcgtgtgcccccgatgatctcatc
cctcctgccaaaaccttcttatcaactctctactctctgcccctgctgtgtccctgtgaa
ggttgtggtgagcatgtgcagttaggcttgttcaaggcccactgtctaaaccatgagttg
gagccgggtacaaacaaacacttatctcattttcaaagctacctgctaaccaataaggga
ggaagaccccgccagcacttgctctccttaacccgtcgtgcccagaagcaccgtctgaag
gatctgaagagccaggtgaaggtgtttgcagacaaagaagaaggcggtgatctgaagtct
gtgtgcttgacactgtttctgctcgctctgagatctgggaatgaacaccggcaggcagat
gagctggaggccatgatgcaaggcagaggctttggattgagtcctgccgtgtgcctggcc
attcgggtcaacacattcctgagctgcagccagtatcataaaatgtatcggacagtcaaa
gctacaagtggccgccagatctttcagcccttgcacaccctcagagctgcagaaaaggaa
cttcttcctggctttcaccagtttgaatggcagccagctctcaaaaacgtgtccacatct
tataatgttggcatcataaatgggctgtcaggatggacatcttcgttagatgactctcca
gctgacaccatcacccggcgctttcgctatgatgtggcgcttgttggagcactgaaggac
cttgaggaggacatcatggaaggtctgagagacactggaatggaagatagcgcttgcacc
ttgggctttagagtcatgatcaaggagtgctgtgatggcatgggtgatgttagcgaaaag
catggtggaggaccagctgttcctgagaaggctgttcgcttctctttcactgttatgtcc
gtctctatccaggctgaagatgaacaggaggaggtcacaatttttacagagccaaagccc
aattctgaactatcctgtaagcccctttgccttatgtttgtggatgaatcagaccacgag
actctcactgctgttttggggcccatagtcgcagagcgaaatgcgatgaaagagagcagg
ctcattctgtctatgggtggcatgccacgctcctttcgcttccacttcaggggcacagga
tatgatgaaaagatggtgcgtgaaatggagggcctggaagcttcgggatctacatacatc
tgtactttgtgtgactccagtcgagcagaggctgctcaaaacatggtgctacactccgtc
acccgcagccatgatgagaatctggaacgttatgaaatatggagaaccaaccccttttct
gagtctgtagatgagctacgagacagagtcaaaggagtctcggccaagccctttctggag
acccagcccacgatagatgcattgcactgcgacataggcaatgccactgaattctacaaa
atcttccaggatgaaattggagaagtgtataaaaaccccaaccccagcagagaggaccgg
cgcagctggagggcagccttggataaacagctgaggaagaagatgaagcttaaaccagtg
atgaggatgaatgggaactatgcccgaaggttaatgaccatggaggctactgaggtggtt
tgtgaactggtgccctcagaggagaggagagaggtcctgagggaactcatgaggctctac
ctccagatgaaacctgtgtggcgtgccacctgtccagccaaggagtgccctgaccagctg
tgccgctacagttttaactcccagcgctttgctgacctgctctccgctaccttcaagtac
aggtacaatggaaaaataaccaattacctgcacaagaccctggcccatgtgcctgaaatc
atagagagagatggatctattggagcctgggccagcgaggggaacgagtcggcaaacaaa
ctgttcaggcgtttcaggaagatgaatgcacgtcagtccaaggcctttgaactggaagac
gtgctaaaacaccactggctgtacacctctaagtacttgcagaagtttatggaggctcac
aaagactctgctaaagctttccaggcaacaatagatccagaagagatccaggatgatgaa
gatttgactccagaaataaccgggttatga
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