Xiphophorus hellerii (green swordtail): 116730055
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Entry
116730055 CDS
T07363
Name
(RefSeq) RNA exonuclease 1 homolog isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
116730055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xhe03009
]
116730055
Ribosome biogenesis [BR:
xhe03009
]
Eukaryotic type
Pre-60S particles
RNases
116730055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
KIX_2
Motif
Other DBs
NCBI-GeneID:
116730055
NCBI-ProteinID:
XP_032434912
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Position
12:7825561..7836815
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AA seq
939 aa
AA seq
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MNPPQSPEILDDYSTEDGVLVIDVSLSPDKTLDQTEHTADLGKSSQNTERDLKEIKTVNV
YLDSQPQMVKTKVVNAASCDDASKVPEIHPVSSTFDKTKYCSNDDGNVVDLTGCLEELER
ECENIGFQSPERKKKRTELGGFSFPSDQPSNPLIELTHKVQKKDLKSQTSLACKRSDPTT
QLKQTSIMDQDKLQVQNQLCCLQNGEKTKTKVFTNQKQVEAAQGSSQIQIHKVTSLNRHS
SSESTEKLLQEEDETVIIIDSSPEDEDHEDEDNYSEPSESDPMEECYRIFMESNAEEQSG
ASIRAEVEKPEANDATQTLTGRKRLAHEAKNSEQPLAKMRPQPQVLVPLWEPGASGFGSR
PSICSKVQQVQYRASAAPAKPGQNLLSSVSQKTPEMQTVPAASTPTQKNLQSYPGQKAYL
NCVPLGTAVIEVGSDLHLILPQGLFPLSATSSSSPVSSVLTPVSRVHPNPNAVRQTAAPA
AVSAPPKYRSMAPLLIAAPPRRPAVSTAFGSSVQATVGASTASQAATQAAVKPLPVKRKP
KQQSEAAKDKVPHDVRQRYVNMFTEEFLKTTADVNEAFEKALSEEKSVYNRSVNKLKYLS
IAVNALKRLKNQSAAAKKEKQTQSQRPKGNIPFNQRKMKENGDFVLYEILKGYTLTDEQM
IENNYPVQHPEKPCSAVLFTDKKVSTGTLKRICCRCGATYSVGKTGKHLRTEECNYHYGK
GVTNRVPGGVETLYSCCQGVMGAPGCQMFKLHVHDYLSLDGFVSTAPRRPSDFSCPGVYS
LDCEMCYTVQGLELSRVTVTSSSLLVVYDTFVRPDNEVIDYNTRFSGISEEDVKGNHTSL
REVQETLLSFISADTILVGHGLETDLCLLKLLHGTVVDTSVVFPHRLGPPNKLSLNSLTA
EYLRRIIQESVCGHDTAEDATACMELMLWKMKEDGKLKK
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgaacccaccgcaatccccagaaatcctcgacgactactctactgaagatggtgtcctg
gttattgatgtttctctgtcacctgacaaaacgttggatcaaactgaacacactgctgac
ttgggaaaatcctcccaaaatacagaaagagacttgaaggagattaagacggtgaatgtt
tatctcgactctcaacctcagatggtaaaaacgaaggtggtaaatgctgcttcctgtgat
gatgcaagcaaagtccctgagatccatcctgtgtcgtctacttttgataaaacaaaatat
tgcagcaatgatgacgggaatgtagttgacttaactggatgtttagaagagcttgaaaga
gagtgtgagaatattggtttccagtcccctgaaaggaaaaagaaacggactgaacttgga
ggtttttccttcccctcagatcaaccaagcaatcctctgattgagctgactcataaagtt
cagaaaaaagatttaaaatctcaaacttcgcttgcttgtaaacgatcagatcccaccact
caacttaaacaaacctcaataatggaccaggacaaactccaggttcagaaccagttatgc
tgtttacaaaatggtgaaaaaacaaagacgaaagttttcaccaaccagaaacaagtggag
gcagcacaaggcagcagccagattcagattcacaaagttacatctttgaatcgacacagc
agttctgaatcaacagagaagctgctgcaggaggaagatgaaactgtgataataatagac
tccagtcctgaggatgaagatcatgaagatgaggacaattactctgagccttctgaaagc
gacccgatggaggaatgctaccggatctttatggagtcaaacgccgaggagcagagcggc
gcgtctattagagccgaagtggaaaaaccggaggcgaacgatgcaactcaaactttaacc
gggaggaagaggttggctcacgaagccaagaactcggagcagccactggccaagatgaga
cctcagcctcaggttttggttcctctgtgggagcctggagcttcagggtttggctcccgg
ccgtccatctgttctaaggtccagcaggttcagtaccgggcctcggctgctccggctaaa
ccgggccagaatcttctttcctcagtgagtcagaaaacaccagagatgcaaaccgttcct
gctgcttcaactccaacccagaaaaaccttcagtcttatccaggtcaaaaggcttatctg
aactgcgtccctctgggaactgcggttatcgaagtgggaagcgaccttcacctgatcctg
cctcagggcctcttccctctctctgccacctcctcatccagcccagtttcatcggttctg
actccagtgagtcgggtccatccaaaccctaacgcagtcaggcaaacggccgctccagct
gcggtttccgctccgcctaaatatcgctccatggcgcctctgctcatcgctgctccgcct
cgacgacccgcggtcagcacggcttttggatcgtctgtccaggcgacagttggcgcttcc
acagcttctcaagctgcgactcaggcagctgtcaagccgcttcctgttaaacgtaaaccg
aagcagcaaagtgaggcagcgaaggacaaagtgcctcatgacgtccgccagcgttacgtg
aacatgttcaccgaggagtttctcaaaacgacagctgatgtcaatgaagcttttgagaag
gccctgtcggaggagaagagtgtgtacaatcgcagcgtgaacaaactgaaatacctgagc
attgcagtgaacgccctcaagagactcaagaaccaaagcgctgctgctaaaaaggaaaaa
cagacccagagtcaaagaccaaaaggcaacatcccgtttaaccaaaggaagatgaaggaa
aatggtgattttgtgttgtatgaaatcttgaagggttacactttgactgacgaacaaatg
atagaaaacaactatcctgtccagcacccagaaaaaccctgttcagctgttctttttact
gacaagaaagtgagcacaggcactctgaaaaggatctgctgtcgatgtggggccacctac
tctgttggcaaaacagggaaacatctcagaacagaggagtgcaactaccactacgggaaa
ggagttacaaaccgagttccaggtggggtggaaactctctacagctgctgtcagggagtc
atgggagcgccgggatgtcaaatgtttaagctgcatgtccatgattacctcagcctggat
gggtttgtatctacagcacccagacgcccctcagacttcagctgtcctggagtttattcc
ttggattgtgaaatgtgttacactgttcagggcctggagctgtccagagtgacggtgacc
agctccagtctgctggtcgtctacgacacgtttgtcagacctgataatgaggtcatcgat
tataacaccaggttttcaggcatcagtgaggaggatgtgaaaggtaaccacacctccctc
agggaggtccaagagactctgttgagcttcatcagtgctgacactattctcgttggacat
ggcctggaaacagacctttgtttactgaagctgcttcatgggacagtggtagacacttca
gtggtcttcccccatcgtctaggtccgcccaacaagctgagtctcaacagcctcaccgct
gaatacctcaggaggattattcaggagagtgtttgtggccacgacactgcagaagacgca
actgcctgcatggagctcatgctgtggaagatgaaagaagatggaaaactgaaaaaatga
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