Xiphophorus hellerii (green swordtail): 116730062
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Entry
116730062 CDS
T07363
Symbol
shoc1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xhe03036
]
116730062 (shoc1)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Meiosis-specific proteins
Others
116730062 (shoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
DUF7742
Motif
Other DBs
NCBI-GeneID:
116730062
NCBI-ProteinID:
XP_032434928
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Position
12:complement(7911441..7933241)
Genome browser
AA seq
1426 aa
AA seq
DB search
MCDKNASNELFSAVRFKALDYVFEASTTLKISINLLSLPAPYVTGTGDLYPHSGRLPDDT
YRKPWIRGKVISSCKLFVSGSVLDDLGQKNQPVNSLERFIVEKDVEIVPSSNPDSFDEDQ
FIFLLNKQINDSYQETFSKCRPDQTSPETKSKDLFLSEDFIAPDLVAELKRHLPSLKAKL
SRLKTLPVSDPLLNSTGISISEDAMFSCFRRCESYQKPADANAISDVTCGDFQDPFLKLP
LLQTESLLLPPVVDSSQLKTQNFTAFSGVGGCVSISPEPVDEECSVLDLLRRTSLSKSPV
EISQFDLQQKQIKEKKQSGKLIESGCSGSIASPVGTELDFILSPIPKKNRTHIRLSTSHL
QEEKLSPFTLTSLLSTRTKNEMKKTVWSSEKHLTSVLRFLLSEPALHEAASGFHPLHEAL
GVIKLEKQSFSSAVDKLELRLETGKPEIILGKNLELIEMMTTEVPTNGQNEKEDFNRMTP
EHEEVEFLHVDSPNNANLLKKSPVGSPRFSSSSPNSRERSTTSTGPEKTRSEPAAGSPAL
VNVSSGVTDWFRSSGGSGCSLPSRSNIGDNQKSLIFTKHRPEKNLDPLSDFMTLRSQQLA
AAAATTSISAVPEEEEVNHETPEQHHHHPEEMKTTDRKPAYVSLAVMGDAVREQNPAAVR
AGRIDGRPVGDSDLKHHSRVIQVQPTESQRRAYGELLAVAVPCLSSARQLGLHFPSWGDF
SCLSPDQTHFLLKQQDQALSRTPAGSSELVRDQEQLFNLAALVHVLVTFKELLLKCDLSI
AVEYLTKAAETCEDHRLRQLRKRLQIILFLSYRKEEPDFKLLELQQLLAEMLQMRKGSNS
TEKILVILSVESHETSSKVATSLSKVTGAAVSSVCPDEEKKKLNGASVVSRVCGSDCVLV
FEENIGPDFPWSCFSVLVEFDHPGPSRWSQICSDRSISRLSFITSLSDSDAEKICWRLEE
NVPFVLLVTEGLLNYPLLLQTLESSFGVTVMERSHSPTLQKLGGIHNYTVITVDESTAIV
IQEQDELGQDRASERLVMRLSALSLQYSCCWLVLHCPDGRGGGFSRETFSNLVLVYSSLV
LFGMKSEELDVKVLIVSEVLEMAEFINQICFSSLMSKYGDPVSYLDRDWLTVSPSQEEAC
LSQFPCVSPLVGQLMLSRAPSLQWLLGADLPQLSLLLPEVPQKVLKLFSDITSLYLSNTE
PATPQINETNQQPFRTAQTFGTESEFMNLLHPEPNSSFLCEAMNPEDLFPNQNPESSNFK
LDLNDSFGSPVKDWTGPDPWKEEERLPVWRGRAGAAGRIVERVGDLWTPRDSPDFSYLQT
SNSPVLLDSRFSSSHTSYSDLQHPHSAHFIFSQSPPTAAVLDQSYHSLTSSGSSSFGSKF
WSGQERKRSGDAADLVESVLTPLKRGRLSYERVPGRKDGQTRLKLF
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgataagaacgcatcaaatgaactcttctccgctgtccggtttaaagctcttgac
tatgtgtttgaggctagcaccactctgaagatctccataaacttgctgtcgctaccagcg
ccgtatgtaactggtaccggtgacctttacccccacagtggcaggttacctgatgacacc
tacaggaagccatggatccgaggaaaggtgatttcttcctgcaagctctttgtcagtggt
tcagttcttgatgaccttggacagaaaaatcaacctgttaattcattggaaagatttatt
gtggaaaaggatgtggagatagttcccagctctaatcccgactccttcgatgaggatcag
tttattttcctcctaaataagcagattaatgattcatatcaggaaacgttttctaaatgc
agacctgaccagacgagtccagaaactaagagcaaagatctcttcctctctgaggacttc
attgctccagatttggtggcagagttaaaaagacatttaccgtctttgaaagccaaactg
tccaggctgaagacgcttcctgtgtccgacccgctgctgaactcaacaggaatcagcatc
tctgaggacgccatgttcagctgcttcagacgatgtgagtcctaccagaaacctgcagac
gccaacgccatcagtgatgtcacatgtggagattttcaagatccgtttcttaaacttcct
ctcttgcagacagagtcgctgctgttaccgcctgtagtcgacagttcccagcttaaaaca
caaaacttcacggctttttctggtgtcggtggttgtgtgagcatttctccagaaccagta
gacgaggaatgttctgtcctggatttacttcgtagaacttctctttcaaagtctccagtg
gaaatttcacagtttgatttgcaacaaaaacaaataaaagaaaagaaacagagtggaaaa
ctgatcgaatcaggatgttcagggagtattgcatctccagttggaacagagctggacttt
attctgagcccgattcctaagaagaaccgaacccacatccgtctgtccacatctcatctc
caggaagaaaaactttctcctttcacactaacatctttgctctcaacaagaaccaaaaat
gagatgaagaaaacagtctggagctcagagaagcatctgacctctgtccttcgcttcctg
ttgtcagagcctgctttacacgaagcagcctccgggtttcatcctctgcatgaagcgttg
ggagttattaaactagaaaaacaaagtttcagcagtgctgttgacaaactggaactacgt
ttggagacaggaaaaccagagataattctgggtaaaaaccttgagttgattgaaatgatg
acgactgaggttcctacaaacggacagaacgagaaggaagacttcaacagaatgacacct
gaacatgaggaggttgaatttctccatgtggattctccaaacaacgccaatctcctaaaa
aaaagccctgttggttcaccccggttctcgtcctcgagcccaaacagtcgggaacgaagc
accaccagcaccggtccagagaagacacgttcggaacctgctgccggttctcctgctctc
gtcaacgtcagcagtggcgtaactgattggtttaggagctccggcggttctgggtgctct
ctgccctccagatcaaacattggagataatcagaagagtttgatcttcacgaaacatcga
ccagagaagaacctggaccctctgtccgacttcatgacgctgaggtcgcagcagctggct
gcagctgctgcgactacaagcatctctgcagtaccagaagaagaagaggtgaaccatgag
acaccagagcagcatcatcatcatccagaagagatgaagacgactgacaggaagccagcg
tacgtgagcctcgctgtgatgggagacgcagtcagagagcagaacccggccgctgtgagg
gcgggtcggatcgacggtcgtcctgtcggcgactcggacctcaaacatcacagccgagtc
attcaggttcagccaacagagagtcagcggcgagcttacggcgagctgctggccgtcgct
gtgccttgtttgagttcggccaggcagctggggctccacttcccgtcgtggggagacttc
agctgcttgtccccagaccagacgcacttcctgctcaaacagcaggatcaggccctcagc
aggaccccggcagggagctccgaactggtcagagatcaggagcagctttttaacctggcg
gctctcgtccatgtgttagtgacgttcaaagagctgctgctgaagtgtgacctgagcatt
gctgtggagtacctgaccaaagcagctgagacgtgtgaggatcaccgcctgaggcagctg
aggaagaggctgcagatcatcctcttcctcagttacaggaaggaagaacccgacttcaaa
ctgctggagctgcagcagcttctggctgaaatgctgcaaatgagaaaaggaagcaactct
acagagaaaattctcgtcattctctctgtggaatctcatgaaaccagttcaaaggtcgcc
accagcttgagcaaagtaaccggagctgcagtgagttcagtttgtcccgatgaggagaag
aagaaactaaacggcgcctctgtggtcagcagagtttgcggcagcgactgtgttttggta
tttgaggagaacatcggaccagattttccctggagctgcttctcagttttggtggagttt
gaccatccgggcccgtcccgctggtcccagatctgcagcgaccgaagcatcagccgcctc
tccttcatcaccagcctgtccgactccgacgcagagaaaatctgttggcgtctggaggaa
aacgtcccgtttgtgttgctggtgaccgaggggcttctgaattatcctctgctgctgcag
acacttgagtcaagcttcggtgtaactgtgatggagaggagccacagtccgactttgcag
aaactcggaggaatccataactacaccgtgatcactgtagacgaaagtacagctatcgtc
attcaggagcaggatgaactgggtcaagaccgagccagtgagaggctggtgatgaggctg
agcgcgctctctctgcagtacagctgctgctggctcgtcctgcactgccctgacggccgg
ggcggagggttttcaagagaaaccttcagcaacttggtgttggtttattcgtctctggtt
ttgttcggcatgaagtccgaggagctggatgtgaaggtgctgattgtgtcagaagtgttg
gaaatggccgagtttatcaatcagatctgcttcagctccctgatgtccaaatatggagat
cctgtgagctacctggacagagactggctgactgtcagcccctctcaggaggaggcgtgt
ctgtcccagttcccgtgtgtcagtcctctggtcggtcagctcatgctgagcagagctccc
tccctgcagtggctcctgggggccgacctgcctcagctctcactgttacttcctgaagtc
ccacagaaagtccttaagctattcagtgacatcacttccttgtacttgagcaacacagaa
ccagcaacccctcagattaacgagacaaaccaacaacccttcagaaccgctcagaccttc
ggcaccgagtccgagttcatgaaccttctgcatccagagcctaacagcagcttcctatgt
gaagctatgaacccagaggacctgttccccaaccagaacccagagtcttcgaacttcaaa
ctggacctgaacgattcctttgggagtccggttaaggactggaccggtccagatccctgg
aaggaggaggagaggcttcctgtgtggagaggcagagctggagcggcagggagaatcgtt
gaacgagtcggtgatctgtggaccccaagagattcccccgatttttcttaccttcagaca
tcaaacagcccggttctactggactctcggttcagttccagtcacacctcttacagtgac
ctccagcatccccacagcgctcacttcatcttcagtcagagccctcctactgcggccgtc
ttggatcaaagctatcacagtttgaccagcagcggttcttcttcttttggatccaagttc
tggagcggtcaggagaggaagaggagcggagacgcagccgatctggttgaatcagtgctg
acgccactgaagaggggaaggctgagctatgagagggttcccggcagaaaggacggacag
acgaggcttaaactgttttaa
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